(Circular) (Six-base) MAPSORT of: pFN21AE0653.seq Check: 627 from: 1 to: 5368 pFN21AE0653 5368 bp With 182 enzymes: SgfI * October 20, 2009 10:50 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3178 278 Size: 53 83 186 936 1642 2468 Fragments arranged by size: 2468 1642 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2711 1937 Size: 774 4594 Acc65I G'GTAC_C Cuts at: 2689 2689 Size: 5368 AclI AA'CG_TT Cuts at: 1563 3495 3868 1563 Size: 1932 373 3063 Fragments arranged by size: 3063 1932 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2405 3431 4815 5083 1632 Size: 773 1026 1384 268 1917 Fragments arranged by size: 1917 1384 1026 773 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5171 AflIII A'CryG_T Cuts at: 1203 4267 5244 1203 Size: 3064 977 1327 Fragments arranged by size: 3064 1327 977 AgeI A'CCGG_T Cuts at: 4199 4199 Size: 5368 AhdI GACnn_n'nnGTC Cuts at: 4097 4097 Size: 5368 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5368 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5368 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2087 2119 2087 Size: 32 5336 AlwNI CAG_nnn'CTG Cuts at: 2383 3111 4683 2383 Size: 728 1572 3068 Fragments arranged by size: 3068 1572 728 ApaLI G'TGCA_C Cuts at: 3425 4581 3425 Size: 1156 4212 ApoI r'AATT_y Cuts at: 1493 2510 2677 2903 3055 5164 1493 Size: 1017 167 226 152 2109 1697 Fragments arranged by size: 2109 1697 1017 226 167 152 AseI AT'TA_AT Cuts at: 160 1032 3922 160 Size: 872 2890 1606 Fragments arranged by size: 2890 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5368 AvaI C'yCGr_G Cuts at: 1870 1943 2190 2693 1870 Size: 73 247 503 4545 Fragments arranged by size: 4545 503 247 73 BamHI G'GATC_C Cuts at: 2698 3065 2698 Size: 367 5001 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2689 4144 618 Size: 325 217 627 902 1455 1842 Fragments arranged by size: 1842 1455 902 627 325 217 BanII G_rGCy'C Cuts at: 1391 2139 2687 1391 Size: 748 548 4072 Fragments arranged by size: 4072 748 548 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2478 928 Size: 971 579 3818 Fragments arranged by size: 3818 971 579 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 2059 2093 3559 3593 1903 Size: 34 122 34 1466 34 3678 Fragments arranged by size: 3678 1466 122 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3260 4470 3260 Size: 1210 4158 BclI T'GATC_A Cuts at: 1548 1548 Size: 5368 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 3979 136 Size: 107 122 71 631 605 2307 1525 Fragments arranged by size: 2307 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 2327 5363 2327 Size: 3036 2332 BlpI GC'TnA_GC Cuts at: 2785 2785 Size: 5368 Bme1580I G_kGCm'C Cuts at: 1790 2163 3429 4585 1790 Size: 373 1266 1156 2573 Fragments arranged by size: 2573 1266 1156 373 BmgBI CAC'GTC Cuts at: 1318 2077 1318 Size: 759 4609 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3099 4057 442 Size: 416 53 83 399 24 1682 958 1753 Fragments arranged by size: 1753 1682 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5368 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 4028 1239 Size: 2789 2579 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2123 3493 4358 4656 2123 Size: 1370 865 298 2835 Fragments arranged by size: 2835 1370 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2592 4031 882 Size: 617 1093 1439 2219 Fragments arranged by size: 2219 1439 1093 617 BsaAI yAC'GTr Cuts at: 493 1204 2056 3159 493 Size: 711 852 1103 2702 Fragments arranged by size: 2702 1103 852 711 BsaBI GATnn'nnATC Cuts at: 5362 5362 Size: 5368 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3175 3557 4192 275 Size: 53 83 186 936 1642 382 635 1451 Fragments arranged by size: 1642 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3801 4199 4473 4620 5031 3801 Size: 398 274 147 411 4138 Fragments arranged by size: 4138 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2087 2117 1178 Size: 30 165 30 684 30 4429 Fragments arranged by size: 4429 684 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5368 BseYI C'CCAG_C Cuts at: 2013 2405 4571 5067 2013 Size: 392 2166 496 2314 Fragments arranged by size: 2314 2166 496 392 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2450 1163 Size: 573 714 4081 Fragments arranged by size: 4081 714 573 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2073 2119 2818 3579 4607 1540 Size: 275 186 72 46 699 761 1028 2301 Fragments arranged by size: 2301 1028 761 699 275 186 72 46 BsiHKAI G_wGCw'C Cuts at: 2139 3429 3514 4585 2139 Size: 1290 85 1071 2922 Fragments arranged by size: 2922 1290 1071 85 BsmI GAATG_Cn' Cuts at: 2879 2972 2879 Size: 93 5275 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2139 2163 2687 3429 3514 4585 1391 Size: 399 349 24 524 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 524 399 349 85 24 BspEI T'CCGG_A Cuts at: 5031 5031 Size: 5368 BspHI T'CATG_A Cuts at: 2521 3257 4987 2521 Size: 736 1730 2902 Fragments arranged by size: 2902 1730 736 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2723 844 Size: 1879 3489 BsrBI CCG'CTC Cuts at: 1394 1823 2517 3255 1394 Size: 429 694 738 3507 Fragments arranged by size: 3507 738 694 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3863 4037 65 Size: 1183 2615 174 1396 Fragments arranged by size: 2615 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2145 4012 4199 1700 Size: 110 335 1867 187 2869 Fragments arranged by size: 2869 1867 335 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5368 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5368 BssSI C'ACGA_G Cuts at: 2156 3428 4440 2156 Size: 1272 1012 3084 Fragments arranged by size: 3084 1272 1012 BstAPI GCAn_nnn'nTGC Cuts at: 794 2204 794 Size: 1410 3958 BstBI TT'CG_AA Cuts at: 4172 4172 Size: 5368 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5368 BstYI r'GATC_y Cuts at: 1972 2327 2698 3065 3450 3467 4919 5005 5017 Size: 355 371 367 385 17 1452 86 12 Cuts at: 5017 5363 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 385 371 367 355 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2296 513 Size: 552 1231 3585 Fragments arranged by size: 3585 1231 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4629 Fragments arranged by size: 4629 683 56 BtsI GCAGTG_nn' Cuts at: 2884 3678 3698 2884 Size: 794 20 4554 Fragments arranged by size: 4554 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5368 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5333 DraI TTT'AAA Cuts at: 2672 2672 Size: 5368 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4375 809 Size: 507 3059 1802 Fragments arranged by size: 3059 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2116 2236 2815 Size: 54 1425 50 275 18 286 120 579 Cuts at: 2815 3704 5333 8 Size: 889 1629 43 Fragments arranged by size: 1629 1425 889 579 286 275 120 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2116 2815 1537 Size: 275 304 699 4090 Fragments arranged by size: 4090 699 304 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3298 1353 Size: 1945 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 2033 3955 4329 4475 387 Size: 1064 138 444 1922 374 146 1280 Fragments arranged by size: 1922 1280 1064 444 374 146 138 EcoICRI GAG'CTC Cuts at: 2137 2137 Size: 5368 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2405 3431 4028 4815 5083 1239 Size: 393 773 1026 597 787 268 1524 Fragments arranged by size: 1524 1026 787 773 597 393 268 EcoNI CCTnn'n_nnAGG Cuts at: 2364 2364 Size: 5368 EcoO109I rG'GnC_Cy Cuts at: 2098 2185 2380 2661 2098 Size: 87 195 281 4805 Fragments arranged by size: 4805 281 195 87 EcoRI G'AATT_C Cuts at: 2677 3055 2677 Size: 378 4990 FspI TGC'GCA Cuts at: 3874 3874 Size: 5368 HaeII r_GCGC'y Cuts at: 1678 4515 1678 Size: 2837 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 4009 4041 4083 4115 1373 Size: 32 135 32 2437 32 42 32 2626 Fragments arranged by size: 2626 2437 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2712 2958 669 Size: 988 281 774 246 3079 Fragments arranged by size: 3079 988 774 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5368 HpaI GTT'AAC Cuts at: 2958 2958 Size: 5368 KpnI G_GTAC'C Cuts at: 2693 2693 Size: 5368 MfeI C'AATT_G Cuts at: 2967 2967 Size: 5368 MluI A'CGCG_T Cuts at: 5244 5244 Size: 5368 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2093 4482 4666 1305 Size: 788 2389 184 2007 Fragments arranged by size: 2389 2007 788 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2238 10 Size: 54 1425 343 406 3140 Fragments arranged by size: 3140 1425 406 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2054 2526 3326 3685 3844 518 Size: 648 888 472 800 359 159 2042 Fragments arranged by size: 2042 888 800 648 472 359 159 MspA1I CmG'CkG Cuts at: 1606 2373 2784 3461 4609 4854 1606 Size: 767 411 677 1148 245 2120 Fragments arranged by size: 2120 1148 767 677 411 245 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 4816 NdeI CA'TA_TG Cuts at: 387 387 Size: 5368 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5368 NotI GC'GGCC_GC Cuts at: 2815 2815 Size: 5368 NspI r_CATG'y Cuts at: 1132 1229 2398 2726 4271 1132 Size: 97 1169 328 1545 2229 Fragments arranged by size: 2229 1545 1169 328 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5368 PciI A'CATG_T Cuts at: 4267 4267 Size: 5368 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5368 PmeI GTTT'AAAC Cuts at: 2672 2672 Size: 5368 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2087 2119 3437 3469 4950 4982 2087 Size: 32 1318 32 1481 32 2473 Fragments arranged by size: 2473 1481 1318 32 32 32 PpuMI rG'GwC_Cy Cuts at: 2098 2185 2380 2098 Size: 87 195 5086 Fragments arranged by size: 5086 195 87 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5368 PsiI TTA'TAA Cuts at: 2938 2938 Size: 5368 PstI C_TGCA'G Cuts at: 830 2720 830 Size: 1890 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5368 PvuII CAG'CTG Cuts at: 2373 2373 Size: 5368 SacI G_AGCT'C Cuts at: 2139 2139 Size: 5368 SalI G'TCGA_C Cuts at: 1936 2710 1936 Size: 774 4594 SbfI CC_TGCA'GG Cuts at: 2720 2720 Size: 5368 ScaI AGT'ACT Cuts at: 3616 5328 3616 Size: 1712 3656 SfcI C'TryA_G Cuts at: 826 1045 2716 3851 4532 4723 826 Size: 219 1671 1135 681 191 1471 Fragments arranged by size: 1671 1471 1135 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5368 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5368 SmaI CCC'GGG Cuts at: 1872 2695 1872 Size: 823 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2138 3472 4373 4635 820 Size: 197 926 195 1334 901 262 1553 Fragments arranged by size: 1553 1334 926 901 262 197 195 SnaBI TAC'GTA Cuts at: 493 3159 493 Size: 2666 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5368 SphI G_CATG'C Cuts at: 1132 2726 1132 Size: 1594 3774 SspI AAT'ATT Cuts at: 5 52 3292 5 Size: 47 3240 2081 Fragments arranged by size: 3240 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5368 StyI C'CwwG_G Cuts at: 513 1065 2807 513 Size: 552 1742 3074 Fragments arranged by size: 3074 1742 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2087 2277 2580 3395 3412 3565 3750 Size: 1255 507 190 303 815 17 153 185 Cuts at: 3750 4195 325 Size: 445 1498 Fragments arranged by size: 1498 1255 815 507 445 303 190 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3614 5326 96 Size: 274 80 33 51 1443 1637 1712 138 Fragments arranged by size: 1712 1637 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5328 5360 5328 Size: 32 5336 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5368 XbaI T'CTAG_A Cuts at: 2704 2704 Size: 5368 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5368 XmaI C'CCGG_G Cuts at: 1870 2693 1870 Size: 823 4545 XmnI GAAnn'nnTTC Cuts at: 3497 3497 Size: 5368 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3176 276 Size: 53 83 186 936 1642 2468 Fragments arranged by size: 2468 1642 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AloI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PpuMI PshAI PsiI PstI PvuI PvuII SacI SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PspOMI PspXI PsrI RsrII SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI