FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3165, 387 aa 1>>>pF1KE3165 387 - 387 aa - 387 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1747+/-0.000699; mu= 17.1463+/- 0.042 mean_var=59.3347+/-12.059, 0's: 0 Z-trim(109.2): 41 B-trim: 562 in 1/48 Lambda= 0.166502 statistics sampled from 10700 (10730) to 10700 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.33), width: 16 Scan time: 2.780 The best scores are: opt bits E(32554) CCDS3938.1 FBXO4 gene_id:26272|Hs108|chr5 ( 387) 2639 642.0 2.6e-184 CCDS75238.1 FBXO4 gene_id:26272|Hs108|chr5 ( 305) 2027 495.0 3.9e-140 CCDS3939.1 FBXO4 gene_id:26272|Hs108|chr5 ( 307) 2027 495.0 3.9e-140 >>CCDS3938.1 FBXO4 gene_id:26272|Hs108|chr5 (387 aa) initn: 2639 init1: 2639 opt: 2639 Z-score: 3422.3 bits: 642.0 E(32554): 2.6e-184 Smith-Waterman score: 2639; 100.0% identity (100.0% similar) in 387 aa overlap (1-387:1-387) 10 20 30 40 50 60 pF1KE3 MAGSEPRSGTNSPPPPFSDWGRLEAAILSGWKTFWQSVSKERVARTTSREEVDEAASTLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS39 MAGSEPRSGTNSPPPPFSDWGRLEAAILSGWKTFWQSVSKERVARTTSREEVDEAASTLT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 RLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS39 RLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 LEILKKPISEVTDGAFFDYMAVYRMCCPYTRRASKSSRPMYGAVTSFLHSLIIQNEPRFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS39 LEILKKPISEVTDGAFFDYMAVYRMCCPYTRRASKSSRPMYGAVTSFLHSLIIQNEPRFA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 MFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS39 MFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 RKERDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS39 RKERDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKR 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 HEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS39 HEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLVQ 310 320 330 340 350 360 370 380 pF1KE3 DTEAETLTGFLNGIEWILEEVESKRAR ::::::::::::::::::::::::::: CCDS39 DTEAETLTGFLNGIEWILEEVESKRAR 370 380 >>CCDS75238.1 FBXO4 gene_id:26272|Hs108|chr5 (305 aa) initn: 2027 init1: 2027 opt: 2027 Z-score: 2629.4 bits: 495.0 E(32554): 3.9e-140 Smith-Waterman score: 2027; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299) 10 20 30 40 50 60 pF1KE3 MAGSEPRSGTNSPPPPFSDWGRLEAAILSGWKTFWQSVSKERVARTTSREEVDEAASTLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 MAGSEPRSGTNSPPPPFSDWGRLEAAILSGWKTFWQSVSKERVARTTSREEVDEAASTLT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 RLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 RLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 LEILKKPISEVTDGAFFDYMAVYRMCCPYTRRASKSSRPMYGAVTSFLHSLIIQNEPRFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 LEILKKPISEVTDGAFFDYMAVYRMCCPYTRRASKSSRPMYGAVTSFLHSLIIQNEPRFA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 MFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 MFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 RKERDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKR ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 RKERDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKS 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 HEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLVQ CCDS75 PGYRG >>CCDS3939.1 FBXO4 gene_id:26272|Hs108|chr5 (307 aa) initn: 2027 init1: 2027 opt: 2027 Z-score: 2629.4 bits: 495.0 E(32554): 3.9e-140 Smith-Waterman score: 2027; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299) 10 20 30 40 50 60 pF1KE3 MAGSEPRSGTNSPPPPFSDWGRLEAAILSGWKTFWQSVSKERVARTTSREEVDEAASTLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS39 MAGSEPRSGTNSPPPPFSDWGRLEAAILSGWKTFWQSVSKERVARTTSREEVDEAASTLT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 RLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS39 RLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 LEILKKPISEVTDGAFFDYMAVYRMCCPYTRRASKSSRPMYGAVTSFLHSLIIQNEPRFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS39 LEILKKPISEVTDGAFFDYMAVYRMCCPYTRRASKSSRPMYGAVTSFLHSLIIQNEPRFA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 MFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS39 MFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 RKERDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKR ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS39 RKERDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKS 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 HEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLVQ CCDS39 KYSYVHF 387 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 03:26:51 2016 done: Sun Nov 6 03:26:51 2016 Total Scan time: 2.780 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]