FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4069, 368 aa
  1>>>pF1KE4069 368 - 368 aa - 368 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9820+/-0.000282; mu= 8.8395+/- 0.018
 mean_var=190.6211+/-38.505, 0's: 0 Z-trim(124.3): 3  B-trim: 0 in 0/58
 Lambda= 0.092894
 statistics sampled from 45740 (45743) to 45740 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.811), E-opt: 0.2 (0.536), width:  16
 Scan time:  9.690

The best scores are:                                      opt bits E(85289)
NP_055991 (OMIM: 609100) F-box only protein 28 iso ( 368) 2392 331.8 1.5e-90
NP_001129587 (OMIM: 609100) F-box only protein 28  ( 179) 1166 167.3 2.5e-41


>>NP_055991 (OMIM: 609100) F-box only protein 28 isoform  (368 aa)
 initn: 2392 init1: 2392 opt: 2392  Z-score: 1746.8  bits: 331.8 E(85289): 1.5e-90
Smith-Waterman score: 2392; 100.0% identity (100.0% similar) in 368 aa overlap (1-368:1-368)

               10        20        30        40        50        60
pF1KE4 MAAAAEERMAEEGGGGQGDGGSSLASGSTQRQPPPPAPQHPQPGSQALPAPALAPDQLPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MAAAAEERMAEEGGGGQGDGGSSLASGSTQRQPPPPAPQHPQPGSQALPAPALAPDQLPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 NNTLVALPIVAIENILSFMSYDEISQLRLVCKRMDLVCQRMLNQGFLKVERYHNLCQKQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 NNTLVALPIVAIENILSFMSYDEISQLRLVCKRMDLVCQRMLNQGFLKVERYHNLCQKQV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 KAQLPRRESERRNHSLARHADILAAVETRLSLLNMTFMKYVDSNLCCFIPGKVIDEIYRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KAQLPRRESERRNHSLARHADILAAVETRLSLLNMTFMKYVDSNLCCFIPGKVIDEIYRV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 LRYVNSTRAPQRAHEVLQELRDISSMAMEYFDEKIVPILKRKLPGSDVSGRLMGSPPVPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LRYVNSTRAPQRAHEVLQELRDISSMAMEYFDEKIVPILKRKLPGSDVSGRLMGSPPVPG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 PSAALTTMQLFSKQNPSRQEVTKLQQQVKTNGAGVTVLRREISELRTKVQEQQKQLQDQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PSAALTTMQLFSKQNPSRQEVTKLQQQVKTNGAGVTVLRREISELRTKVQEQQKQLQDQD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 QKLLEQTQIIGEQNARLAELERKLREVMESAVGNSSGSGQNEESPRKRKKATEAIDSLRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 QKLLEQTQIIGEQNARLAELERKLREVMESAVGNSSGSGQNEESPRKRKKATEAIDSLRK
              310       320       330       340       350       360

               
pF1KE4 SKRLRNRK
       ::::::::
NP_055 SKRLRNRK
               

>>NP_001129587 (OMIM: 609100) F-box only protein 28 isof  (179 aa)
 initn: 1315 init1: 1166 opt: 1166  Z-score: 863.0  bits: 167.3 E(85289): 2.5e-41
Smith-Waterman score: 1166; 97.7% identity (98.9% similar) in 177 aa overlap (1-177:1-177)

               10        20        30        40        50        60
pF1KE4 MAAAAEERMAEEGGGGQGDGGSSLASGSTQRQPPPPAPQHPQPGSQALPAPALAPDQLPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAAAEERMAEEGGGGQGDGGSSLASGSTQRQPPPPAPQHPQPGSQALPAPALAPDQLPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 NNTLVALPIVAIENILSFMSYDEISQLRLVCKRMDLVCQRMLNQGFLKVERYHNLCQKQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNTLVALPIVAIENILSFMSYDEISQLRLVCKRMDLVCQRMLNQGFLKVERYHNLCQKQV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 KAQLPRRESERRNHSLARHADILAAVETRLSLLNMTFMKYVDSNLCCFIPGKVIDEIYRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::  :..   
NP_001 KAQLPRRESERRNHSLARHADILAAVETRLSLLNMTFMKYVDSNLCCFIPGKFQDRLQP 
              130       140       150       160       170          

              190       200       210       220       230       240
pF1KE4 LRYVNSTRAPQRAHEVLQELRDISSMAMEYFDEKIVPILKRKLPGSDVSGRLMGSPPVPG




368 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:00:04 2016 done: Sun Nov  6 04:00:06 2016
 Total Scan time:  9.690 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]