FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4069, 368 aa 1>>>pF1KE4069 368 - 368 aa - 368 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.5986+/-0.00075; mu= 5.1313+/- 0.046 mean_var=195.5856+/-39.407, 0's: 0 Z-trim(116.6): 7 B-trim: 0 in 0/51 Lambda= 0.091708 statistics sampled from 17203 (17210) to 17203 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.806), E-opt: 0.2 (0.529), width: 16 Scan time: 3.200 The best scores are: opt bits E(32554) CCDS1539.1 FBXO28 gene_id:23219|Hs108|chr1 ( 368) 2392 327.9 8.8e-90 CCDS44320.1 FBXO28 gene_id:23219|Hs108|chr1 ( 179) 1166 165.4 3.4e-41 >>CCDS1539.1 FBXO28 gene_id:23219|Hs108|chr1 (368 aa) initn: 2392 init1: 2392 opt: 2392 Z-score: 1725.4 bits: 327.9 E(32554): 8.8e-90 Smith-Waterman score: 2392; 100.0% identity (100.0% similar) in 368 aa overlap (1-368:1-368) 10 20 30 40 50 60 pF1KE4 MAAAAEERMAEEGGGGQGDGGSSLASGSTQRQPPPPAPQHPQPGSQALPAPALAPDQLPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 MAAAAEERMAEEGGGGQGDGGSSLASGSTQRQPPPPAPQHPQPGSQALPAPALAPDQLPQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 NNTLVALPIVAIENILSFMSYDEISQLRLVCKRMDLVCQRMLNQGFLKVERYHNLCQKQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 NNTLVALPIVAIENILSFMSYDEISQLRLVCKRMDLVCQRMLNQGFLKVERYHNLCQKQV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 KAQLPRRESERRNHSLARHADILAAVETRLSLLNMTFMKYVDSNLCCFIPGKVIDEIYRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 KAQLPRRESERRNHSLARHADILAAVETRLSLLNMTFMKYVDSNLCCFIPGKVIDEIYRV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 LRYVNSTRAPQRAHEVLQELRDISSMAMEYFDEKIVPILKRKLPGSDVSGRLMGSPPVPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 LRYVNSTRAPQRAHEVLQELRDISSMAMEYFDEKIVPILKRKLPGSDVSGRLMGSPPVPG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 PSAALTTMQLFSKQNPSRQEVTKLQQQVKTNGAGVTVLRREISELRTKVQEQQKQLQDQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 PSAALTTMQLFSKQNPSRQEVTKLQQQVKTNGAGVTVLRREISELRTKVQEQQKQLQDQD 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 QKLLEQTQIIGEQNARLAELERKLREVMESAVGNSSGSGQNEESPRKRKKATEAIDSLRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 QKLLEQTQIIGEQNARLAELERKLREVMESAVGNSSGSGQNEESPRKRKKATEAIDSLRK 310 320 330 340 350 360 pF1KE4 SKRLRNRK :::::::: CCDS15 SKRLRNRK >>CCDS44320.1 FBXO28 gene_id:23219|Hs108|chr1 (179 aa) initn: 1315 init1: 1166 opt: 1166 Z-score: 853.1 bits: 165.4 E(32554): 3.4e-41 Smith-Waterman score: 1166; 97.7% identity (98.9% similar) in 177 aa overlap (1-177:1-177) 10 20 30 40 50 60 pF1KE4 MAAAAEERMAEEGGGGQGDGGSSLASGSTQRQPPPPAPQHPQPGSQALPAPALAPDQLPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 MAAAAEERMAEEGGGGQGDGGSSLASGSTQRQPPPPAPQHPQPGSQALPAPALAPDQLPQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 NNTLVALPIVAIENILSFMSYDEISQLRLVCKRMDLVCQRMLNQGFLKVERYHNLCQKQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 NNTLVALPIVAIENILSFMSYDEISQLRLVCKRMDLVCQRMLNQGFLKVERYHNLCQKQV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 KAQLPRRESERRNHSLARHADILAAVETRLSLLNMTFMKYVDSNLCCFIPGKVIDEIYRV :::::::::::::::::::::::::::::::::::::::::::::::::::: :.. CCDS44 KAQLPRRESERRNHSLARHADILAAVETRLSLLNMTFMKYVDSNLCCFIPGKFQDRLQP 130 140 150 160 170 190 200 210 220 230 240 pF1KE4 LRYVNSTRAPQRAHEVLQELRDISSMAMEYFDEKIVPILKRKLPGSDVSGRLMGSPPVPG 368 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:00:04 2016 done: Sun Nov 6 04:00:04 2016 Total Scan time: 3.200 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]