Result of FASTA (omim) for
pFN21AE0530
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0530, 154 aa
1>>>pF1KE0530 154 - 154 aa - 154 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8810+/-0.00031; mu= 14.7397+/- 0.019
mean_var=66.9156+/-13.243, 0's: 0 Z-trim(115.9): 20 B-trim: 0 in 0/51
Lambda= 0.156787
statistics sampled from 26703 (26723) to 26703 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.313), width: 16
Scan time: 4.710
The best scores are: opt bits E(85289)
XP_005261662 (OMIM: 160000) PREDICTED: myoglobin i ( 154) 1030 241.1 5.2e-64
NP_005359 (OMIM: 160000) myoglobin [Homo sapiens] ( 154) 1030 241.1 5.2e-64
NP_976312 (OMIM: 160000) myoglobin [Homo sapiens] ( 154) 1030 241.1 5.2e-64
NP_976311 (OMIM: 160000) myoglobin [Homo sapiens] ( 154) 1030 241.1 5.2e-64
NP_599030 (OMIM: 608759) cytoglobin [Homo sapiens] ( 190) 253 65.4 5e-11
XP_005257062 (OMIM: 608759) PREDICTED: cytoglobin ( 202) 253 65.5 5.2e-11
NP_005323 (OMIM: 142310) hemoglobin subunit zeta [ ( 142) 230 60.1 1.5e-09
XP_005255345 (OMIM: 142310) PREDICTED: hemoglobin ( 142) 230 60.1 1.5e-09
XP_005255344 (OMIM: 142310) PREDICTED: hemoglobin ( 154) 230 60.2 1.6e-09
NP_000175 (OMIM: 141749,142250,613977) hemoglobin ( 147) 186 50.2 1.5e-06
NP_000550 (OMIM: 141749,142200) hemoglobin subunit ( 147) 185 50.0 1.7e-06
NP_000508 (OMIM: 140700,141850,604131,613978) hemo ( 142) 180 48.8 3.7e-06
NP_000549 (OMIM: 140700,141800,604131,613978) hemo ( 142) 180 48.8 3.7e-06
NP_005322 (OMIM: 142240) hemoglobin subunit theta- ( 142) 176 47.9 7e-06
NP_005321 (OMIM: 142100) hemoglobin subunit epsilo ( 147) 171 46.8 1.6e-05
NP_000510 (OMIM: 142000) hemoglobin subunit delta ( 147) 166 45.7 3.4e-05
NP_001003938 (OMIM: 609639) hemoglobin subunit mu ( 141) 163 45.0 5.3e-05
NP_000509 (OMIM: 140700,141749,141900,603902,60390 ( 147) 163 45.0 5.5e-05
XP_016879605 (OMIM: 608759) PREDICTED: cytoglobin ( 137) 151 42.3 0.00034
>>XP_005261662 (OMIM: 160000) PREDICTED: myoglobin isofo (154 aa)
initn: 1030 init1: 1030 opt: 1030 Z-score: 1270.1 bits: 241.1 E(85289): 5.2e-64
Smith-Waterman score: 1030; 100.0% identity (100.0% similar) in 154 aa overlap (1-154:1-154)
10 20 30 40 50 60
pF1KE0 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH
70 80 90 100 110 120
130 140 150
pF1KE0 PGDFGADAQGAMNKALELFRKDMASNYKELGFQG
::::::::::::::::::::::::::::::::::
XP_005 PGDFGADAQGAMNKALELFRKDMASNYKELGFQG
130 140 150
>>NP_005359 (OMIM: 160000) myoglobin [Homo sapiens] (154 aa)
initn: 1030 init1: 1030 opt: 1030 Z-score: 1270.1 bits: 241.1 E(85289): 5.2e-64
Smith-Waterman score: 1030; 100.0% identity (100.0% similar) in 154 aa overlap (1-154:1-154)
10 20 30 40 50 60
pF1KE0 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH
70 80 90 100 110 120
130 140 150
pF1KE0 PGDFGADAQGAMNKALELFRKDMASNYKELGFQG
::::::::::::::::::::::::::::::::::
NP_005 PGDFGADAQGAMNKALELFRKDMASNYKELGFQG
130 140 150
>>NP_976312 (OMIM: 160000) myoglobin [Homo sapiens] (154 aa)
initn: 1030 init1: 1030 opt: 1030 Z-score: 1270.1 bits: 241.1 E(85289): 5.2e-64
Smith-Waterman score: 1030; 100.0% identity (100.0% similar) in 154 aa overlap (1-154:1-154)
10 20 30 40 50 60
pF1KE0 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH
70 80 90 100 110 120
130 140 150
pF1KE0 PGDFGADAQGAMNKALELFRKDMASNYKELGFQG
::::::::::::::::::::::::::::::::::
NP_976 PGDFGADAQGAMNKALELFRKDMASNYKELGFQG
130 140 150
>>NP_976311 (OMIM: 160000) myoglobin [Homo sapiens] (154 aa)
initn: 1030 init1: 1030 opt: 1030 Z-score: 1270.1 bits: 241.1 E(85289): 5.2e-64
Smith-Waterman score: 1030; 100.0% identity (100.0% similar) in 154 aa overlap (1-154:1-154)
10 20 30 40 50 60
pF1KE0 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH
70 80 90 100 110 120
130 140 150
pF1KE0 PGDFGADAQGAMNKALELFRKDMASNYKELGFQG
::::::::::::::::::::::::::::::::::
NP_976 PGDFGADAQGAMNKALELFRKDMASNYKELGFQG
130 140 150
>>NP_599030 (OMIM: 608759) cytoglobin [Homo sapiens] (190 aa)
initn: 238 init1: 126 opt: 253 Z-score: 319.0 bits: 65.4 E(85289): 5e-11
Smith-Waterman score: 253; 28.6% identity (64.3% similar) in 154 aa overlap (3-152:19-171)
10 20 30 40
pF1KE0 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKF
::..: . : .:... :. : .:.:.: . : . . :
NP_599 MEKVPGEMEIERRERSEELSEAERKAVQAMWARLYANCEDVGVAILVRFFVNFPSAKQYF
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 DKFKHLKSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAEIKPL----AQSHATKHKI
..:::... ::. : .:.::. :. ::. .... : ... . ...:: :::.
NP_599 SQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENL-HDPDKVSSVLALVGKAHALKHKV
70 80 90 100 110
110 120 130 140 150
pF1KE0 PVKYLEFISECIIQVLQSKHPGDFGADAQGAMNKALELFRKDMASNYKELGFQG
:....: :..:. . .:: ..: : : :. . ... :::.:.
NP_599 EPVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYKEVGWVQQVPNAT
120 130 140 150 160 170
NP_599 TPPATLPSSGP
180 190
>>XP_005257062 (OMIM: 608759) PREDICTED: cytoglobin isof (202 aa)
initn: 238 init1: 126 opt: 253 Z-score: 318.6 bits: 65.5 E(85289): 5.2e-11
Smith-Waterman score: 253; 28.6% identity (64.3% similar) in 154 aa overlap (3-152:19-171)
10 20 30 40
pF1KE0 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKF
::..: . : .:... :. : .:.:.: . : . . :
XP_005 MEKVPGEMEIERRERSEELSEAERKAVQAMWARLYANCEDVGVAILVRFFVNFPSAKQYF
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 DKFKHLKSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAEIKPL----AQSHATKHKI
..:::... ::. : .:.::. :. ::. .... : ... . ...:: :::.
XP_005 SQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENL-HDPDKVSSVLALVGKAHALKHKV
70 80 90 100 110
110 120 130 140 150
pF1KE0 PVKYLEFISECIIQVLQSKHPGDFGADAQGAMNKALELFRKDMASNYKELGFQG
:....: :..:. . .:: ..: : : :. . ... :::.:.
XP_005 EPVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYKEVGWVQQVPNAT
120 130 140 150 160 170
XP_005 THSSWRRSPEGSWGRQASCPSCC
180 190 200
>>NP_005323 (OMIM: 142310) hemoglobin subunit zeta [Homo (142 aa)
initn: 167 init1: 123 opt: 230 Z-score: 292.6 bits: 60.1 E(85289): 1.5e-09
Smith-Waterman score: 230; 28.2% identity (63.8% similar) in 149 aa overlap (1-148:1-142)
10 20 30 40 50 60
pF1KE0 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE
:.:. : .....:.:. .. : :.: ::: .::.: : .: : .:
NP_005 MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHF------DLHPGSA
10 20 30 40 50
70 80 90 100 110
pF1KE0 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKI-PVKYLEFISECIIQVLQSK
.:. ::. :..:.: .:. . .. :.. :: .. ::.. ...:.:.. .: ..
NP_005 QLRAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNF-KLLSHCLLVTLAAR
60 70 80 90 100 110
120 130 140 150
pF1KE0 HPGDFGADAQGAMNKALELFRKDMASNYKELGFQG
:.:: :.:..: .: : . . .. .:.
NP_005 FPADFTAEAHAAWDKFLSVVSSVLTEKYR
120 130 140
>>XP_005255345 (OMIM: 142310) PREDICTED: hemoglobin subu (142 aa)
initn: 167 init1: 123 opt: 230 Z-score: 292.6 bits: 60.1 E(85289): 1.5e-09
Smith-Waterman score: 230; 28.2% identity (63.8% similar) in 149 aa overlap (1-148:1-142)
10 20 30 40 50 60
pF1KE0 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE
:.:. : .....:.:. .. : :.: ::: .::.: : .: : .:
XP_005 MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHF------DLHPGSA
10 20 30 40 50
70 80 90 100 110
pF1KE0 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKI-PVKYLEFISECIIQVLQSK
.:. ::. :..:.: .:. . .. :.. :: .. ::.. ...:.:.. .: ..
XP_005 QLRAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNF-KLLSHCLLVTLAAR
60 70 80 90 100 110
120 130 140 150
pF1KE0 HPGDFGADAQGAMNKALELFRKDMASNYKELGFQG
:.:: :.:..: .: : . . .. .:.
XP_005 FPADFTAEAHAAWDKFLSVVSSVLTEKYR
120 130 140
>>XP_005255344 (OMIM: 142310) PREDICTED: hemoglobin subu (154 aa)
initn: 167 init1: 123 opt: 230 Z-score: 292.1 bits: 60.2 E(85289): 1.6e-09
Smith-Waterman score: 230; 28.2% identity (63.8% similar) in 149 aa overlap (1-148:13-154)
10 20 30 40
pF1KE0 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFK
:.:. : .....:.:. .. : :.: ::: .::.: : .:
XP_005 MTCFFDAAHPAAMSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHF-
10 20 30 40 50
50 60 70 80 90 100
pF1KE0 HLKSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKI-PVKYLEF
: .: .:. ::. :..:.: .:. . .. :.. :: .. ::.. ..
XP_005 -----DLHPGSAQLRAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNF-KL
60 70 80 90 100 110
110 120 130 140 150
pF1KE0 ISECIIQVLQSKHPGDFGADAQGAMNKALELFRKDMASNYKELGFQG
.:.:.. .: .. :.:: :.:..: .: : . . .. .:.
XP_005 LSHCLLVTLAARFPADFTAEAHAAWDKFLSVVSSVLTEKYR
120 130 140 150
>>NP_000175 (OMIM: 141749,142250,613977) hemoglobin subu (147 aa)
initn: 141 init1: 141 opt: 186 Z-score: 238.6 bits: 50.2 E(85289): 1.5e-06
Smith-Waterman score: 186; 25.0% identity (59.5% similar) in 148 aa overlap (1-147:1-146)
10 20 30 40 50
pF1KE0 MG-LSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKAS
:: ... . . ..:::: .. : :.: ::. .: : . ::.: .:.: . . ..
NP_000 MGHFTEEDKATITSLWGKV--NVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGN
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 EDLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSK
.: :: :::.:: .:. .. . :.. : : .. . ...... .. :: .
NP_000 PKVKAHGKKVLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIH
60 70 80 90 100 110
120 130 140 150
pF1KE0 HPGDFGADAQGAMNKALELFRKDMASNYKELGFQG
.: ..:.. .: . . ..: :
NP_000 FGKEFTPEVQASWQKMVTGVASALSSRYH
120 130 140
154 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 01:30:19 2016 done: Thu Nov 3 01:30:20 2016
Total Scan time: 4.710 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]