FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3403, 170 aa 1>>>pF1KE3403 170 - 170 aa - 170 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0296+/-0.000581; mu= 13.4603+/- 0.035 mean_var=58.8261+/-11.603, 0's: 0 Z-trim(111.8): 52 B-trim: 3 in 1/49 Lambda= 0.167220 statistics sampled from 12634 (12689) to 12634 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.39), width: 16 Scan time: 1.520 The best scores are: opt bits E(32554) CCDS13426.1 UBE2V1 gene_id:7335|Hs108|chr20 ( 170) 1160 287.4 2.9e-78 CCDS33483.1 UBE2V1 gene_id:7335|Hs108|chr20 ( 147) 955 237.9 2e-63 CCDS13424.1 UBE2V1 gene_id:387522|Hs108|chr20 ( 370) 956 238.3 3.7e-63 CCDS43738.1 UBE2V2 gene_id:7336|Hs108|chr8 ( 145) 881 220.0 4.6e-58 CCDS74740.1 UBE2V1 gene_id:7335|Hs108|chr20 ( 105) 716 180.2 3.4e-46 CCDS13427.1 UBE2V1 gene_id:7335|Hs108|chr20 ( 103) 614 155.5 8.6e-39 CCDS58775.1 UBE2V1 gene_id:7335|Hs108|chr20 ( 105) 348 91.4 1.8e-19 >>CCDS13426.1 UBE2V1 gene_id:7335|Hs108|chr20 (170 aa) initn: 1160 init1: 1160 opt: 1160 Z-score: 1518.5 bits: 287.4 E(32554): 2.9e-78 Smith-Waterman score: 1160; 100.0% identity (100.0% similar) in 170 aa overlap (1-170:1-170) 10 20 30 40 50 60 pF1KE3 MPGEVQASYLKSQSKLSDEGRLEPRKFHCKGVKVPRNFRLLEELEEGQKGVGDGTVSWGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MPGEVQASYLKSQSKLSDEGRLEPRKFHCKGVKVPRNFRLLEELEEGQKGVGDGTVSWGL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 EDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 EDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSN 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 GVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN :::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 GVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN 130 140 150 160 170 >>CCDS33483.1 UBE2V1 gene_id:7335|Hs108|chr20 (147 aa) initn: 955 init1: 955 opt: 955 Z-score: 1252.2 bits: 237.9 E(32554): 2e-63 Smith-Waterman score: 955; 100.0% identity (100.0% similar) in 140 aa overlap (31-170:8-147) 10 20 30 40 50 60 pF1KE3 MPGEVQASYLKSQSKLSDEGRLEPRKFHCKGVKVPRNFRLLEELEEGQKGVGDGTVSWGL :::::::::::::::::::::::::::::: CCDS33 MAATTGSGVKVPRNFRLLEELEEGQKGVGDGTVSWGL 10 20 30 70 80 90 100 110 120 pF1KE3 EDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 EDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSN 40 50 60 70 80 90 130 140 150 160 170 pF1KE3 GVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN :::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 GVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN 100 110 120 130 140 >>CCDS13424.1 UBE2V1 gene_id:387522|Hs108|chr20 (370 aa) initn: 955 init1: 955 opt: 956 Z-score: 1247.5 bits: 238.3 E(32554): 3.7e-63 Smith-Waterman score: 956; 96.6% identity (97.3% similar) in 146 aa overlap (27-170:225-370) 10 20 30 40 50 pF1KE3 MPGEVQASYLKSQSKLSDEGRLEPRKFHC--KGVKVPRNFRLLEELEEGQKGVGDG . : :::::::::::::::::::::::: CCDS13 LPRWVTLLQDWHVILPRKHHRIHHVSPHETYFCITTGVKVPRNFRLLEELEEGQKGVGDG 200 210 220 230 240 250 60 70 80 90 100 110 pF1KE3 TVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 TVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMN 260 270 280 290 300 310 120 130 140 150 160 170 pF1KE3 GVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 GVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN 320 330 340 350 360 370 >>CCDS43738.1 UBE2V2 gene_id:7336|Hs108|chr8 (145 aa) initn: 906 init1: 881 opt: 881 Z-score: 1155.8 bits: 220.0 E(32554): 4.6e-58 Smith-Waterman score: 881; 91.4% identity (96.4% similar) in 140 aa overlap (31-170:6-145) 10 20 30 40 50 60 pF1KE3 MPGEVQASYLKSQSKLSDEGRLEPRKFHCKGVKVPRNFRLLEELEEGQKGVGDGTVSWGL :::::::::::::::::::::::::::::: CCDS43 MAVSTGVKVPRNFRLLEELEEGQKGVGDGTVSWGL 10 20 30 70 80 90 100 110 120 pF1KE3 EDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSN ::::::::::::::::::::: :::::::::.::::::::::: :::::::::::.:.:. CCDS43 EDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSS 40 50 60 70 80 90 130 140 150 160 170 pF1KE3 GVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN :.:: :.: ::::::::::::::::::::::::::::::::::::: :.: CCDS43 GMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTYNN 100 110 120 130 140 >>CCDS74740.1 UBE2V1 gene_id:7335|Hs108|chr20 (105 aa) initn: 716 init1: 716 opt: 716 Z-score: 942.8 bits: 180.2 E(32554): 3.4e-46 Smith-Waterman score: 716; 100.0% identity (100.0% similar) in 105 aa overlap (66-170:1-105) 40 50 60 70 80 90 pF1KE3 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECG :::::::::::::::::::::::::::::: CCDS74 MTLTRWTGMIIGPPRTIYENRIYSLKIECG 10 20 30 100 110 120 130 140 150 pF1KE3 PKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 PKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKE 40 50 60 70 80 90 160 170 pF1KE3 NMKLPQPPEGQCYSN ::::::::::::::: CCDS74 NMKLPQPPEGQCYSN 100 >>CCDS13427.1 UBE2V1 gene_id:7335|Hs108|chr20 (103 aa) initn: 610 init1: 610 opt: 614 Z-score: 809.9 bits: 155.5 E(32554): 8.6e-39 Smith-Waterman score: 614; 87.9% identity (92.5% similar) in 107 aa overlap (64-170:3-103) 40 50 60 70 80 90 pF1KE3 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIE ::..: .:. .::::::::::::: CCDS13 MKEDLNLENFTA------KTIYENRIYSLKIE 10 20 100 110 120 130 140 150 pF1KE3 CGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 CGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMS 30 40 50 60 70 80 160 170 pF1KE3 KENMKLPQPPEGQCYSN ::::::::::::::::: CCDS13 KENMKLPQPPEGQCYSN 90 100 >>CCDS58775.1 UBE2V1 gene_id:7335|Hs108|chr20 (105 aa) initn: 657 init1: 348 opt: 348 Z-score: 463.0 bits: 91.4 E(32554): 1.8e-19 Smith-Waterman score: 577; 70.0% identity (70.0% similar) in 140 aa overlap (31-170:8-105) 10 20 30 40 50 60 pF1KE3 MPGEVQASYLKSQSKLSDEGRLEPRKFHCKGVKVPRNFRLLEELEEGQKGVGDGTVSWGL :::::::::::::::::::::::::::::: CCDS58 MAATTGSGVKVPRNFRLLEELEEGQKGVGDGTVSWGL 10 20 30 70 80 90 100 110 120 pF1KE3 EDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSN :::::::::::::::::::: CCDS58 EDDEDMTLTRWTGMIIGPPR---------------------------------------- 40 50 130 140 150 160 170 pF1KE3 GVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN :::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 --VDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN 60 70 80 90 100 170 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:11:13 2016 done: Sun Nov 6 05:11:13 2016 Total Scan time: 1.520 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]