FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3401, 149 aa 1>>>pF1KE3401 149 - 149 aa - 149 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.5494+/-0.000276; mu= 16.0870+/- 0.017 mean_var=61.0193+/-12.469, 0's: 0 Z-trim(120.0): 136 B-trim: 611 in 1/52 Lambda= 0.164188 statistics sampled from 34604 (34772) to 34604 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.788), E-opt: 0.2 (0.408), width: 16 Scan time: 5.130 The best scores are: opt bits E(85289) NP_871622 (OMIM: 602963) ubiquitin-conjugating enz ( 149) 1054 257.0 8e-69 NP_003331 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 999 244.0 6.6e-65 NP_871616 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 999 244.0 6.6e-65 NP_871619 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 999 244.0 6.6e-65 NP_871615 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 999 244.0 6.6e-65 NP_871617 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 999 244.0 6.6e-65 NP_871618 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 999 244.0 6.6e-65 NP_871620 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 999 244.0 6.6e-65 NP_871621 (OMIM: 602963) ubiquitin-conjugating enz ( 148) 987 241.2 4.8e-64 NP_003330 (OMIM: 602962) ubiquitin-conjugating enz ( 147) 983 240.2 9.2e-64 XP_016865309 (OMIM: 602962) PREDICTED: ubiquitin-c ( 173) 974 238.1 4.5e-63 NP_003329 (OMIM: 602961) ubiquitin-conjugating enz ( 147) 919 225.0 3.4e-59 NP_001287724 (OMIM: 602963) ubiquitin-conjugating ( 118) 837 205.5 2e-53 XP_016864073 (OMIM: 602963) PREDICTED: ubiquitin-c ( 118) 837 205.5 2e-53 NP_862821 (OMIM: 602962) ubiquitin-conjugating enz ( 118) 827 203.2 1e-52 XP_016872098 (OMIM: 602961) PREDICTED: ubiquitin-c ( 110) 712 175.9 1.6e-44 NP_001191809 (OMIM: 602961) ubiquitin-conjugating ( 109) 692 171.2 4.1e-43 NP_872619 (OMIM: 604151) ubiquitin-conjugating enz ( 207) 651 161.7 5.6e-40 NP_006348 (OMIM: 604151) ubiquitin-conjugating enz ( 207) 651 161.7 5.6e-40 NP_001265484 (OMIM: 604151) ubiquitin-conjugating ( 207) 651 161.7 5.6e-40 XP_005246301 (OMIM: 604151) PREDICTED: ubiquitin-c ( 207) 651 161.7 5.6e-40 NP_001265483 (OMIM: 604151) ubiquitin-conjugating ( 207) 651 161.7 5.6e-40 NP_003332 (OMIM: 602916) ubiquitin-conjugating enz ( 193) 646 160.5 1.2e-39 XP_005265489 (OMIM: 602163) PREDICTED: ubiquitin-c ( 201) 646 160.5 1.2e-39 NP_689866 (OMIM: 602163) ubiquitin-conjugating enz ( 201) 646 160.5 1.2e-39 NP_001189405 (OMIM: 602916) ubiquitin-conjugating ( 160) 643 159.7 1.7e-39 NP_872607 (OMIM: 602916) ubiquitin-conjugating enz ( 176) 576 143.9 1.1e-34 XP_005265490 (OMIM: 602163) PREDICTED: ubiquitin-c ( 189) 545 136.5 1.9e-32 XP_005265488 (OMIM: 602916) PREDICTED: ubiquitin-c ( 167) 534 133.9 1e-31 NP_003339 (OMIM: 603679) ubiquitin-conjugating enz ( 152) 444 112.5 2.6e-25 NP_003327 (OMIM: 300860,312180) ubiquitin-conjugat ( 152) 435 110.4 1.1e-24 NP_003328 (OMIM: 179095) ubiquitin-conjugating enz ( 152) 429 109.0 3e-24 NP_054895 (OMIM: 610538,616435) ubiquitin-conjugat ( 197) 422 107.4 1.1e-23 NP_003338 (OMIM: 603721) ubiquitin-conjugating enz ( 154) 387 99.0 3e-21 NP_001243284 (OMIM: 603721) ubiquitin-conjugating ( 212) 383 98.2 7.3e-21 NP_005330 (OMIM: 602846) ubiquitin-conjugating enz ( 200) 380 97.5 1.1e-20 NP_001297255 (OMIM: 610538,616435) ubiquitin-conju ( 167) 379 97.2 1.2e-20 NP_001269090 (OMIM: 300860,312180) ubiquitin-conju ( 119) 376 96.3 1.5e-20 NP_055316 (OMIM: 610309) ubiquitin-conjugating enz ( 222) 360 92.8 3.3e-19 NP_001243285 (OMIM: 603721) ubiquitin-conjugating ( 122) 354 91.1 5.7e-19 NP_001104582 (OMIM: 602846) ubiquitin-conjugating ( 157) 338 87.4 9.5e-18 NP_004214 (OMIM: 603890) ubiquitin/ISG15-conjugati ( 153) 337 87.2 1.1e-17 NP_008950 (OMIM: 605574) ubiquitin-conjugating enz ( 179) 337 87.3 1.2e-17 NP_919236 (OMIM: 601661) SUMO-conjugating enzyme U ( 158) 333 86.3 2.2e-17 NP_919237 (OMIM: 601661) SUMO-conjugating enzyme U ( 158) 333 86.3 2.2e-17 NP_003336 (OMIM: 601661) SUMO-conjugating enzyme U ( 158) 333 86.3 2.2e-17 NP_919235 (OMIM: 601661) SUMO-conjugating enzyme U ( 158) 333 86.3 2.2e-17 XP_016879129 (OMIM: 601661) PREDICTED: SUMO-conjug ( 158) 333 86.3 2.2e-17 NP_861517 (OMIM: 605574) ubiquitin-conjugating enz ( 140) 326 84.6 6.2e-17 NP_003960 (OMIM: 603173) NEDD8-conjugating enzyme ( 183) 308 80.4 1.5e-15 >>NP_871622 (OMIM: 602963) ubiquitin-conjugating enzyme (149 aa) initn: 1054 init1: 1054 opt: 1054 Z-score: 1356.6 bits: 257.0 E(85289): 8e-69 Smith-Waterman score: 1054; 100.0% identity (100.0% similar) in 149 aa overlap (1-149:1-149) 10 20 30 40 50 60 pF1KE3 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_871 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_871 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP 70 80 90 100 110 120 130 140 pF1KE3 LVPEIARIYKTDRDKYNRISREWTQKYAM ::::::::::::::::::::::::::::: NP_871 LVPEIARIYKTDRDKYNRISREWTQKYAM 130 140 >>NP_003331 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa) initn: 999 init1: 999 opt: 999 Z-score: 1286.2 bits: 244.0 E(85289): 6.6e-65 Smith-Waterman score: 999; 97.9% identity (99.3% similar) in 144 aa overlap (6-149:4-147) 10 20 30 40 50 60 pF1KE3 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT : ..::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP 60 70 80 90 100 110 130 140 pF1KE3 LVPEIARIYKTDRDKYNRISREWTQKYAM ::::::::::::::::::::::::::::: NP_003 LVPEIARIYKTDRDKYNRISREWTQKYAM 120 130 140 >>NP_871616 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa) initn: 999 init1: 999 opt: 999 Z-score: 1286.2 bits: 244.0 E(85289): 6.6e-65 Smith-Waterman score: 999; 97.9% identity (99.3% similar) in 144 aa overlap (6-149:4-147) 10 20 30 40 50 60 pF1KE3 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT : ..::::::::::::::::::::::::::::::::::::::::::::::::::: NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_871 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP 60 70 80 90 100 110 130 140 pF1KE3 LVPEIARIYKTDRDKYNRISREWTQKYAM ::::::::::::::::::::::::::::: NP_871 LVPEIARIYKTDRDKYNRISREWTQKYAM 120 130 140 >>NP_871619 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa) initn: 999 init1: 999 opt: 999 Z-score: 1286.2 bits: 244.0 E(85289): 6.6e-65 Smith-Waterman score: 999; 97.9% identity (99.3% similar) in 144 aa overlap (6-149:4-147) 10 20 30 40 50 60 pF1KE3 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT : ..::::::::::::::::::::::::::::::::::::::::::::::::::: NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_871 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP 60 70 80 90 100 110 130 140 pF1KE3 LVPEIARIYKTDRDKYNRISREWTQKYAM ::::::::::::::::::::::::::::: NP_871 LVPEIARIYKTDRDKYNRISREWTQKYAM 120 130 140 >>NP_871615 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa) initn: 999 init1: 999 opt: 999 Z-score: 1286.2 bits: 244.0 E(85289): 6.6e-65 Smith-Waterman score: 999; 97.9% identity (99.3% similar) in 144 aa overlap (6-149:4-147) 10 20 30 40 50 60 pF1KE3 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT : ..::::::::::::::::::::::::::::::::::::::::::::::::::: NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_871 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP 60 70 80 90 100 110 130 140 pF1KE3 LVPEIARIYKTDRDKYNRISREWTQKYAM ::::::::::::::::::::::::::::: NP_871 LVPEIARIYKTDRDKYNRISREWTQKYAM 120 130 140 >>NP_871617 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa) initn: 999 init1: 999 opt: 999 Z-score: 1286.2 bits: 244.0 E(85289): 6.6e-65 Smith-Waterman score: 999; 97.9% identity (99.3% similar) in 144 aa overlap (6-149:4-147) 10 20 30 40 50 60 pF1KE3 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT : ..::::::::::::::::::::::::::::::::::::::::::::::::::: NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_871 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP 60 70 80 90 100 110 130 140 pF1KE3 LVPEIARIYKTDRDKYNRISREWTQKYAM ::::::::::::::::::::::::::::: NP_871 LVPEIARIYKTDRDKYNRISREWTQKYAM 120 130 140 >>NP_871618 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa) initn: 999 init1: 999 opt: 999 Z-score: 1286.2 bits: 244.0 E(85289): 6.6e-65 Smith-Waterman score: 999; 97.9% identity (99.3% similar) in 144 aa overlap (6-149:4-147) 10 20 30 40 50 60 pF1KE3 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT : ..::::::::::::::::::::::::::::::::::::::::::::::::::: NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_871 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP 60 70 80 90 100 110 130 140 pF1KE3 LVPEIARIYKTDRDKYNRISREWTQKYAM ::::::::::::::::::::::::::::: NP_871 LVPEIARIYKTDRDKYNRISREWTQKYAM 120 130 140 >>NP_871620 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa) initn: 999 init1: 999 opt: 999 Z-score: 1286.2 bits: 244.0 E(85289): 6.6e-65 Smith-Waterman score: 999; 97.9% identity (99.3% similar) in 144 aa overlap (6-149:4-147) 10 20 30 40 50 60 pF1KE3 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT : ..::::::::::::::::::::::::::::::::::::::::::::::::::: NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_871 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP 60 70 80 90 100 110 130 140 pF1KE3 LVPEIARIYKTDRDKYNRISREWTQKYAM ::::::::::::::::::::::::::::: NP_871 LVPEIARIYKTDRDKYNRISREWTQKYAM 120 130 140 >>NP_871621 (OMIM: 602963) ubiquitin-conjugating enzyme (148 aa) initn: 987 init1: 987 opt: 987 Z-score: 1270.8 bits: 241.2 E(85289): 4.8e-64 Smith-Waterman score: 987; 95.8% identity (99.3% similar) in 144 aa overlap (6-149:4-147) 10 20 30 40 50 60 pF1KE3 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT : ..::::::::::::::::::::::::::::::::::::::::::::::::::: NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_871 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP 60 70 80 90 100 110 130 140 pF1KE3 LVPEIARIYKTDRDKYNRISREWTQKYAM ::::::::::::::::::..::::.:::: NP_871 LVPEIARIYKTDRDKYNRLAREWTEKYAML 120 130 140 >>NP_003330 (OMIM: 602962) ubiquitin-conjugating enzyme (147 aa) initn: 983 init1: 983 opt: 983 Z-score: 1265.7 bits: 240.2 E(85289): 9.2e-64 Smith-Waterman score: 983; 95.8% identity (98.6% similar) in 144 aa overlap (6-149:4-147) 10 20 30 40 50 60 pF1KE3 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT : . :::.::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP 60 70 80 90 100 110 130 140 pF1KE3 LVPEIARIYKTDRDKYNRISREWTQKYAM :::::::::::::.:::::.::::::::: NP_003 LVPEIARIYKTDREKYNRIAREWTQKYAM 120 130 140 149 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:12:15 2016 done: Sun Nov 6 05:12:16 2016 Total Scan time: 5.130 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]