FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7686, 410 aa 1>>>pF1KB7686 410 - 410 aa - 410 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.2705+/-0.0003; mu= 8.3385+/- 0.019 mean_var=110.3692+/-22.187, 0's: 0 Z-trim(120.4): 412 B-trim: 0 in 0/56 Lambda= 0.122082 statistics sampled from 35084 (35498) to 35084 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.416), width: 16 Scan time: 9.980 The best scores are: opt bits E(85289) NP_055064 (OMIM: 268100,604485,611131) photorecept ( 410) 2773 498.7 1.1e-140 NP_057430 (OMIM: 268100,604485,611131) photorecept ( 367) 2495 449.7 5.4e-126 NP_001273031 (OMIM: 603849) nuclear receptor subfa ( 422) 1076 199.8 1.1e-50 NP_003260 (OMIM: 603849) nuclear receptor subfamil ( 385) 1059 196.8 7.7e-50 NP_005225 (OMIM: 132880) nuclear receptor subfamil ( 404) 633 121.8 3.1e-27 XP_016865286 (OMIM: 132890,615722) PREDICTED: COUP ( 273) 596 115.2 2e-25 NP_001138629 (OMIM: 107773,615779) COUP transcript ( 261) 593 114.7 2.8e-25 NP_001138628 (OMIM: 107773,615779) COUP transcript ( 261) 593 114.7 2.8e-25 NP_005645 (OMIM: 132890,615722) COUP transcription ( 423) 596 115.3 3e-25 NP_001138627 (OMIM: 107773,615779) COUP transcript ( 281) 593 114.7 3e-25 NP_066285 (OMIM: 107773,615779) COUP transcription ( 414) 593 114.7 4.2e-25 NP_619726 (OMIM: 125853,601487,601665,604367,60933 ( 477) 498 98.0 5.2e-20 NP_005028 (OMIM: 125853,601487,601665,604367,60933 ( 477) 498 98.0 5.2e-20 XP_011532143 (OMIM: 125853,601487,601665,604367,60 ( 477) 498 98.0 5.2e-20 NP_619725 (OMIM: 125853,601487,601665,604367,60933 ( 477) 498 98.0 5.2e-20 NP_056953 (OMIM: 125853,601487,601665,604367,60933 ( 505) 498 98.0 5.5e-20 NP_001278850 (OMIM: 180245) retinoic acid receptor ( 365) 471 93.2 1.1e-18 NP_001278849 (OMIM: 180245) retinoic acid receptor ( 435) 471 93.2 1.3e-18 NP_002948 (OMIM: 180245) retinoic acid receptor RX ( 462) 471 93.3 1.4e-18 NP_001165290 (OMIM: 600409) peroxisome proliferato ( 402) 468 92.7 1.7e-18 XP_011513011 (OMIM: 600409) PREDICTED: peroxisome ( 441) 468 92.7 1.9e-18 XP_011513009 (OMIM: 600409) PREDICTED: peroxisome ( 441) 468 92.7 1.9e-18 XP_016866461 (OMIM: 600409) PREDICTED: peroxisome ( 441) 468 92.7 1.9e-18 XP_006715183 (OMIM: 600409) PREDICTED: peroxisome ( 441) 468 92.7 1.9e-18 XP_016866460 (OMIM: 600409) PREDICTED: peroxisome ( 441) 468 92.7 1.9e-18 XP_011513012 (OMIM: 600409) PREDICTED: peroxisome ( 441) 468 92.7 1.9e-18 NP_001165289 (OMIM: 600409) peroxisome proliferato ( 441) 468 92.7 1.9e-18 XP_006715186 (OMIM: 600409) PREDICTED: peroxisome ( 441) 468 92.7 1.9e-18 NP_006229 (OMIM: 600409) peroxisome proliferator-a ( 441) 468 92.7 1.9e-18 XP_016866463 (OMIM: 600409) PREDICTED: peroxisome ( 441) 468 92.7 1.9e-18 XP_016866462 (OMIM: 600409) PREDICTED: peroxisome ( 441) 468 92.7 1.9e-18 XP_005249250 (OMIM: 600409) PREDICTED: peroxisome ( 441) 468 92.7 1.9e-18 NP_001278918 (OMIM: 180246) retinoic acid receptor ( 347) 456 90.6 6.6e-18 XP_016866665 (OMIM: 180246) PREDICTED: retinoic ac ( 414) 456 90.6 7.7e-18 XP_011513098 (OMIM: 180246) PREDICTED: retinoic ac ( 420) 456 90.6 7.8e-18 XP_005249335 (OMIM: 180246) PREDICTED: retinoic ac ( 441) 456 90.6 8.2e-18 NP_001257330 (OMIM: 180246) retinoic acid receptor ( 537) 456 90.6 9.7e-18 XP_011530279 (OMIM: 177735,600983,605115) PREDICTE ( 988) 456 90.7 1.7e-17 XP_011530278 (OMIM: 177735,600983,605115) PREDICTE ( 988) 456 90.7 1.7e-17 XP_011530277 (OMIM: 177735,600983,605115) PREDICTE ( 988) 456 90.7 1.7e-17 NP_068811 (OMIM: 180246) retinoic acid receptor RX ( 533) 451 89.8 1.8e-17 NP_001243499 (OMIM: 180247) retinoic acid receptor ( 340) 444 88.5 2.8e-17 NP_001243500 (OMIM: 180247) retinoic acid receptor ( 340) 444 88.5 2.8e-17 XP_011528543 (OMIM: 170998) PREDICTED: peroxisome ( 468) 445 88.7 3.3e-17 NP_001001928 (OMIM: 170998) peroxisome proliferato ( 468) 445 88.7 3.3e-17 XP_005261713 (OMIM: 170998) PREDICTED: peroxisome ( 468) 445 88.7 3.3e-17 NP_005027 (OMIM: 170998) peroxisome proliferator-a ( 468) 445 88.7 3.3e-17 XP_011528545 (OMIM: 170998) PREDICTED: peroxisome ( 468) 445 88.7 3.3e-17 XP_011528542 (OMIM: 170998) PREDICTED: peroxisome ( 468) 445 88.7 3.3e-17 XP_006724332 (OMIM: 170998) PREDICTED: peroxisome ( 468) 445 88.7 3.3e-17 >>NP_055064 (OMIM: 268100,604485,611131) photoreceptor-s (410 aa) initn: 2773 init1: 2773 opt: 2773 Z-score: 2646.8 bits: 498.7 E(85289): 1.1e-140 Smith-Waterman score: 2773; 100.0% identity (100.0% similar) in 410 aa overlap (1-410:1-410) 10 20 30 40 50 60 pF1KB7 METRPTALMSSTVAAAAPAAGAASRKESPGRWGLGEDPTGVSPSLQCRVCGDSSSGKHYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 METRPTALMSSTVAAAAPAAGAASRKESPGRWGLGEDPTGVSPSLQCRVCGDSSSGKHYG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 IYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 IYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 ERQPRSTAQVHLDSMESNTESRPESLVAPPAPAGRSPRGPTPMSAARALGHHFMASLITA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 ERQPRSTAQVHLDSMESNTESRPESLVAPPAPAGRSPRGPTPMSAARALGHHFMASLITA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 ETCAKLEPEDADENIDVTSNDPEFPSSPYSSSSPCGLDSIHETSARLLFMAVKWAKNLPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 ETCAKLEPEDADENIDVTSNDPEFPSSPYSSSSPCGLDSIHETSARLLFMAVKWAKNLPV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB7 FSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 FSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMET 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB7 RVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQSQVMLSQHSKAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 RVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQSQVMLSQHSKAH 310 320 330 340 350 360 370 380 390 400 410 pF1KB7 HPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMFKN :::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 HPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMFKN 370 380 390 400 410 >>NP_057430 (OMIM: 268100,604485,611131) photoreceptor-s (367 aa) initn: 2495 init1: 2495 opt: 2495 Z-score: 2382.9 bits: 449.7 E(85289): 5.4e-126 Smith-Waterman score: 2495; 100.0% identity (100.0% similar) in 367 aa overlap (1-367:1-367) 10 20 30 40 50 60 pF1KB7 METRPTALMSSTVAAAAPAAGAASRKESPGRWGLGEDPTGVSPSLQCRVCGDSSSGKHYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 METRPTALMSSTVAAAAPAAGAASRKESPGRWGLGEDPTGVSPSLQCRVCGDSSSGKHYG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 IYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 IYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 ERQPRSTAQVHLDSMESNTESRPESLVAPPAPAGRSPRGPTPMSAARALGHHFMASLITA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 ERQPRSTAQVHLDSMESNTESRPESLVAPPAPAGRSPRGPTPMSAARALGHHFMASLITA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 ETCAKLEPEDADENIDVTSNDPEFPSSPYSSSSPCGLDSIHETSARLLFMAVKWAKNLPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 ETCAKLEPEDADENIDVTSNDPEFPSSPYSSSSPCGLDSIHETSARLLFMAVKWAKNLPV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB7 FSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 FSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMET 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB7 RVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQSQVMLSQHSKAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 RVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQSQVMLSQHSKAH 310 320 330 340 350 360 370 380 390 400 410 pF1KB7 HPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMFKN ::::::: NP_057 HPSQPVR >>NP_001273031 (OMIM: 603849) nuclear receptor subfamily (422 aa) initn: 1058 init1: 377 opt: 1076 Z-score: 1031.3 bits: 199.8 E(85289): 1.1e-50 Smith-Waterman score: 1076; 43.3% identity (68.7% similar) in 409 aa overlap (16-410:21-419) 10 20 30 40 50 pF1KB7 METRPTALMSSTVAAAAPAAGAASRKESPGRW-GLGEDPTGVSPSLQCRVCGDSS : :. : . : : .: :.: : .. :.:::: : NP_001 MFRAGAEGAEKEPSPRPECRADPGPGLGFPLGSGLPWPSLLESPGGRILDIPCKVCGDRS 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB7 SGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA-GMCPVDKAHRNQCQACRLKKCLQAGM ::::::.:::.:::::::::.:: : :. : : :::::.:::::.::::::::...: NP_001 SGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNM 70 80 90 100 110 120 120 130 140 150 160 170 pF1KB7 NQDAVQNERQPRSTAQVHLDSMESNTESRPESLVAPPAPAGRSPRGPTPMSAARALGHHF :.::::.:: :: :. .. . . :. .: :.. : .:. ..:. : : NP_001 NKDAVQHERGPR-TSTIRKQVALYFRGHKEENGAAAHFPSAALP-APAFFTAVTQLEPHG 130 140 150 160 170 180 190 200 210 220 pF1KB7 MASLITAETCAKLEPEDADENIDVTSNDPEFPSSPYSSSSPCGL-----DSIHETSARLL . .. : :: ..... :..: ...: : .:. :..:::: NP_001 LELAAVSTT-----PERQTL-VSLAQPTPKYPHE--VNGTPMYLYEVATESVCESAARLL 180 190 200 210 220 230 230 240 250 260 270 280 pF1KB7 FMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGG ::..::::..:.::.: ..::..:::.:: :::.:: ::..:.:. ::: .. . NP_001 FMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNT 240 250 260 270 280 290 290 300 310 320 330 340 pF1KB7 AQGRLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFK--P-----ETRGLKDPEH . .:. : ..:::...::: : .: :::::.: .: :: : : :.... NP_001 DSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAA 300 310 320 330 340 350 350 360 370 380 390 400 pF1KB7 VEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPME . ::::..:. :... ....:.:: ::::::::::.:: :. :: .::.:::::.:. NP_001 IAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPIT 360 370 380 390 400 410 410 pF1KB7 KLLCDMFKN .:: ::.:. NP_001 RLLSDMYKSSDI 420 >>NP_003260 (OMIM: 603849) nuclear receptor subfamily 2 (385 aa) initn: 1058 init1: 377 opt: 1059 Z-score: 1015.7 bits: 196.8 E(85289): 7.7e-50 Smith-Waterman score: 1059; 43.7% identity (69.9% similar) in 389 aa overlap (38-410:4-382) 10 20 30 40 50 60 pF1KB7 LMSSTVAAAAPAAGAASRKESPGRWGLGEDPTGVSP---SLQCRVCGDSSSGKHYGIYAC :.: . .. :.:::: :::::::.::: NP_003 MSKPAGSTSRILDIPCKVCGDRSSGKHYGVYAC 10 20 30 70 80 90 100 110 120 pF1KB7 NGCSGFFKRSVRRRLIYRCQVGA-GMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQNERQ .:::::::::.:: : :. : : :::::.:::::.::::::::...::.::::.:: NP_003 DGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQHERG 40 50 60 70 80 90 130 140 150 160 170 180 pF1KB7 PRSTAQVHLDSMESNTESRPESLVAPPAPAGRSPRGPTPMSAARALGHHFMASLITAETC :: :. .. . . :. .: :.. : .:. ..:. : : . .. : NP_003 PR-TSTIRKQVALYFRGHKEENGAAAHFPSAALP-APAFFTAVTQLEPHGLELAAVSTT- 100 110 120 130 140 150 190 200 210 220 230 pF1KB7 AKLEPEDADENIDVTSNDPEFPSSPYSSSSPCGL-----DSIHETSARLLFMAVKWAKNL :: ..... :..: ...: : .:. :..::::::..::::.. NP_003 ----PERQTL-VSLAQPTPKYPHE--VNGTPMYLYEVATESVCESAARLLFMSIKWAKSV 160 170 180 190 200 240 250 260 270 280 290 pF1KB7 PVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASM :.::.: ..::..:::.:: :::.:: ::..:.:. ::: .. . . .:. NP_003 PAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIIS 210 220 230 240 250 260 300 310 320 330 340 350 pF1KB7 ETRVLQETISRFRALAVDPTEFACMKALVLFK--P-----ETRGLKDPEHVEALQDQSQV : ..:::...::: : .: :::::.: .: :: : : :.... . ::::..:. NP_003 EIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIAALQDEAQL 270 280 290 300 310 320 360 370 380 390 400 410 pF1KB7 MLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMFKN :... ....:.:: ::::::::::.:: :. :: .::.:::::.:. .:: ::.:. NP_003 TLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRLLSDMYKSS 330 340 350 360 370 380 NP_003 DI >>NP_005225 (OMIM: 132880) nuclear receptor subfamily 2 (404 aa) initn: 955 init1: 573 opt: 633 Z-score: 609.9 bits: 121.8 E(85289): 3.1e-27 Smith-Waterman score: 956; 41.1% identity (65.5% similar) in 397 aa overlap (14-408:21-390) 10 20 30 40 50 pF1KB7 METRPTALMSSTVAAAAPAAGAASRKESPGRWGLGEDPTGVSPSLQ--CRVCG :.. : :. . :: . .: :.:: : ::: NP_005 MAMVTGGWGGPGGDTNGVDKAGGYPRAAEDDSASPPGAASDAEPGDEERPGLQVDCVVCG 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB7 DSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLKKCLQA :.:::::::...:.::..:::::.:: : : :. . : .:. :::::: ::::::... NP_005 DKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRV 70 80 90 100 110 120 130 140 150 160 170 pF1KB7 GMNQDAVQNERQPRSTAQVHLDSMESNTESRPESLVAPPAPAGRSPRGPTPMSAARALGH :: ..::: : :.: .. ... : : : .: : .: : :.: NP_005 GMRKEAVQRGRIPHSLP----GAVAASSGSPPGSALAAVASGGDLFPGQ-PVS------- 120 130 140 150 160 180 190 200 210 220 230 pF1KB7 HFMASLITAETCAKLEPEDADENIDVTSNDPEFPSSPYSSSSPCGLDSIHETSARLLFMA ...:.:. :: : : . .: .. .... :.:.. : .::::: . NP_005 ELIAQLLRAE------PYPAAAG--------RFGAGGGAAGAVLGIDNVCELAARLLFST 170 180 190 200 210 240 250 260 270 280 290 pF1KB7 VKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQG :.::.. : : :: ::: ::. .:::::.:.: : .::: . :::: :: : NP_005 VEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAE 220 230 240 250 260 270 300 310 320 330 340 350 pF1KB7 RLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQSQV : . ..:..:: .... : :: .:..:.::..:: :.. ::.:: :::.::...:: NP_005 RAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQV 280 290 300 310 320 330 360 370 380 390 400 410 pF1KB7 MLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMFKN :... .:..:::: :::.::: ::.:: . : : ::: . .:.::.: :. ::. NP_005 ALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDMLLSG 340 350 360 370 380 390 NP_005 STFNWPYGSGQ 400 >>XP_016865286 (OMIM: 132890,615722) PREDICTED: COUP tra (273 aa) initn: 614 init1: 566 opt: 596 Z-score: 577.4 bits: 115.2 E(85289): 2e-25 Smith-Waterman score: 596; 44.8% identity (72.4% similar) in 210 aa overlap (204-408:48-257) 180 190 200 210 220 pF1KB7 MASLITAETCAKLEPEDADENIDVTSNDPEFPSSPYSSS--SPC---GLDSIHETSARLL .:.: :.:. .: :...: : .:::: XP_016 PGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLL 20 30 40 50 60 70 230 240 250 260 270 280 pF1KB7 FMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGG : ::.::.:.: : .: . ::: ::. .:::::.:.: : :.:: :::: :. XP_016 FSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPM 80 90 100 110 120 130 290 300 310 320 330 340 pF1KB7 AQGRLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQ . :.. . :..:: . ...:: :: .:..:.::.::: .. ::.: :.:.::.. XP_016 SADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEK 140 150 160 170 180 190 350 360 370 380 390 400 pF1KB7 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMF :: : .. ....:.:: ::::::: ::::: ... :: ::: . .:.::.: :. ::. XP_016 SQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDML 200 210 220 230 240 250 410 pF1KB7 KN XP_016 LSGSSFNWPYMSIQCS 260 270 >>NP_001138629 (OMIM: 107773,615779) COUP transcription (261 aa) initn: 591 init1: 567 opt: 593 Z-score: 574.8 bits: 114.7 E(85289): 2.8e-25 Smith-Waterman score: 593; 44.3% identity (72.9% similar) in 210 aa overlap (204-408:38-247) 180 190 200 210 220 pF1KB7 MASLITAETCAKLEPEDADENIDVTSNDPEFPSSPYSSS--SPC---GLDSIHETSARLL .:.: ..:. .: :...: : .::.: NP_001 HGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARML 10 20 30 40 50 60 230 240 250 260 270 280 pF1KB7 FMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGG : ::.::.:.: : .: . ::: ::. .:::::.:.: : :.:: :::: :. NP_001 FSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPM 70 80 90 100 110 120 290 300 310 320 330 340 pF1KB7 AQGRLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQ . :.. . :..:: . ...:: :: .:..:.::.::: .. ::.: :::.::.. NP_001 SADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEK 130 140 150 160 170 180 350 360 370 380 390 400 pF1KB7 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMF :: : .. ....:.::.::::::: ::::: ... :: ::: . .:.::.: :. ::. NP_001 SQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDML 190 200 210 220 230 240 410 pF1KB7 KN NP_001 LSGSSFNWPYMAIQ 250 260 >>NP_001138628 (OMIM: 107773,615779) COUP transcription (261 aa) initn: 591 init1: 567 opt: 593 Z-score: 574.8 bits: 114.7 E(85289): 2.8e-25 Smith-Waterman score: 593; 44.3% identity (72.9% similar) in 210 aa overlap (204-408:38-247) 180 190 200 210 220 pF1KB7 MASLITAETCAKLEPEDADENIDVTSNDPEFPSSPYSSS--SPC---GLDSIHETSARLL .:.: ..:. .: :...: : .::.: NP_001 HGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARML 10 20 30 40 50 60 230 240 250 260 270 280 pF1KB7 FMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGG : ::.::.:.: : .: . ::: ::. .:::::.:.: : :.:: :::: :. NP_001 FSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPM 70 80 90 100 110 120 290 300 310 320 330 340 pF1KB7 AQGRLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQ . :.. . :..:: . ...:: :: .:..:.::.::: .. ::.: :::.::.. NP_001 SADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEK 130 140 150 160 170 180 350 360 370 380 390 400 pF1KB7 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMF :: : .. ....:.::.::::::: ::::: ... :: ::: . .:.::.: :. ::. NP_001 SQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDML 190 200 210 220 230 240 410 pF1KB7 KN NP_001 LSGSSFNWPYMAIQ 250 260 >>NP_005645 (OMIM: 132890,615722) COUP transcription fac (423 aa) initn: 960 init1: 566 opt: 596 Z-score: 574.4 bits: 115.3 E(85289): 3e-25 Smith-Waterman score: 939; 40.6% identity (63.5% similar) in 397 aa overlap (21-408:56-407) 10 20 30 40 pF1KB7 METRPTALMSSTVAAAAPAAGAASRKESPGRWG-LGEDPTGVSPSLQ--- : . .:: : :. : : . : : NP_005 AAQAARGGGGGAGEQQQQAGSGAPHTPQTPGQPGAPATPGTAGDKGQGPPGSGQSQQHIE 30 40 50 60 70 80 50 60 70 80 90 100 pF1KB7 CRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLK : ::::.::::::: ..:.::..:::::::: : : :... . ::.:. :::::: :::: NP_005 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN-CPIDQHHRNQCQYCRLK 90 100 110 120 130 140 110 120 130 140 150 160 pF1KB7 KCLQAGMNQDAVQNERQPRSTAQVHLDSMESNTESRPESLVAPPAPAGRSPRGPTPMSAA :::..:: ..::: :.: : . : :. . . :.. NP_005 KCLKVGMRREAVQRGRMP------------------PTQ----PNPGQYALTNGDPLN-- 150 160 170 180 170 180 190 200 210 220 pF1KB7 RALGHHFMASLITAETCAKLEPEDADENIDVTSNDPEFPSSPYSSS--SPC---GLDSIH :: .... :. . :: .:.: :.:. .: :...: NP_005 ---GHCYLSGYIS--LLLRAEP---------------YPTSRYGSQCMQPNNIMGIENIC 190 200 210 220 230 240 250 260 270 280 pF1KB7 ETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPP : .::::: ::.::.:.: : .: . ::: ::. .:::::.:.: : :.:: :::: NP_005 ELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAA 230 240 250 260 270 280 290 300 310 320 330 340 pF1KB7 EASAAGGAQGRLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEH :. . :.. . :..:: . ...:: :: .:..:.::.::: .. ::.: : NP_005 GLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAH 290 300 310 320 330 340 350 360 370 380 390 400 pF1KB7 VEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPME .:.::..:: : .. ....:.:: ::::::: ::::: ... :: ::: . .:.::.: NP_005 IESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIE 350 360 370 380 390 400 410 pF1KB7 KLLCDMFKN :. ::. NP_005 TLIRDMLLSGSSFNWPYMSIQCS 410 420 >>NP_001138627 (OMIM: 107773,615779) COUP transcription (281 aa) initn: 591 init1: 567 opt: 593 Z-score: 574.3 bits: 114.7 E(85289): 3e-25 Smith-Waterman score: 593; 44.3% identity (72.9% similar) in 210 aa overlap (204-408:58-267) 180 190 200 210 220 pF1KB7 MASLITAETCAKLEPEDADENIDVTSNDPEFPSSPYSSS--SPC---GLDSIHETSARLL .:.: ..:. .: :...: : .::.: NP_001 HGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARML 30 40 50 60 70 80 230 240 250 260 270 280 pF1KB7 FMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGG : ::.::.:.: : .: . ::: ::. .:::::.:.: : :.:: :::: :. NP_001 FSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPM 90 100 110 120 130 140 290 300 310 320 330 340 pF1KB7 AQGRLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQ . :.. . :..:: . ...:: :: .:..:.::.::: .. ::.: :::.::.. NP_001 SADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEK 150 160 170 180 190 200 350 360 370 380 390 400 pF1KB7 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMF :: : .. ....:.::.::::::: ::::: ... :: ::: . .:.::.: :. ::. NP_001 SQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDML 210 220 230 240 250 260 410 pF1KB7 KN NP_001 LSGSSFNWPYMAIQ 270 280 410 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:28:43 2016 done: Sun Nov 6 05:28:44 2016 Total Scan time: 9.980 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]