FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3201, 471 aa 1>>>pF1KE3201 471 - 471 aa - 471 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.5015+/-0.000397; mu= 8.4967+/- 0.025 mean_var=199.7566+/-38.558, 0's: 0 Z-trim(118.0): 12 B-trim: 49 in 1/57 Lambda= 0.090745 statistics sampled from 30603 (30612) to 30603 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.359), width: 16 Scan time: 9.400 The best scores are: opt bits E(85289) NP_036307 (OMIM: 609089) F-box only protein 3 isof ( 471) 3238 436.8 6e-122 NP_208385 (OMIM: 609089) F-box only protein 3 isof ( 415) 2841 384.8 2.4e-106 XP_011518283 (OMIM: 609089) PREDICTED: F-box only ( 415) 2841 384.8 2.4e-106 XP_011518282 (OMIM: 609089) PREDICTED: F-box only ( 479) 2841 384.9 2.7e-106 XP_016873022 (OMIM: 609089) PREDICTED: F-box only ( 309) 2115 289.6 8.2e-78 XP_011518284 (OMIM: 609089) PREDICTED: F-box only ( 317) 1718 237.6 3.7e-62 >>NP_036307 (OMIM: 609089) F-box only protein 3 isoform (471 aa) initn: 3238 init1: 3238 opt: 3238 Z-score: 2310.3 bits: 436.8 E(85289): 6e-122 Smith-Waterman score: 3238; 100.0% identity (100.0% similar) in 471 aa overlap (1-471:1-471) 10 20 30 40 50 60 pF1KE3 MAAMETETAPLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 MAAMETETAPLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 WLISEEEKTQKNQCWKSLFIDTYSDVGRYIDHYAAIKKAWDDLKKYLEPRCPRMVLSLKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 WLISEEEKTQKNQCWKSLFIDTYSDVGRYIDHYAAIKKAWDDLKKYLEPRCPRMVLSLKE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 GAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 GAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 AGGFQQRQGLKYCLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 AGGFQQRQGLKYCLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 IGATFTDWFTSYVKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 IGATFTDWFTSYVKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVH 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 PPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 PPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRV 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 YEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLEMGPDEY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 YEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLEMGPDEY 370 380 390 400 410 420 430 440 450 460 470 pF1KE3 EEMEEEEEEEEEEDEDDDSADMDESDEDDEEERRRRVFDVPIRRRRCSRLF ::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 EEMEEEEEEEEEEDEDDDSADMDESDEDDEEERRRRVFDVPIRRRRCSRLF 430 440 450 460 470 >>NP_208385 (OMIM: 609089) F-box only protein 3 isoform (415 aa) initn: 2841 init1: 2841 opt: 2841 Z-score: 2030.1 bits: 384.8 E(85289): 2.4e-106 Smith-Waterman score: 2841; 100.0% identity (100.0% similar) in 413 aa overlap (1-413:1-413) 10 20 30 40 50 60 pF1KE3 MAAMETETAPLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_208 MAAMETETAPLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 WLISEEEKTQKNQCWKSLFIDTYSDVGRYIDHYAAIKKAWDDLKKYLEPRCPRMVLSLKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_208 WLISEEEKTQKNQCWKSLFIDTYSDVGRYIDHYAAIKKAWDDLKKYLEPRCPRMVLSLKE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 GAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_208 GAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 AGGFQQRQGLKYCLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_208 AGGFQQRQGLKYCLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 IGATFTDWFTSYVKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_208 IGATFTDWFTSYVKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVH 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 PPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_208 PPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRV 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 YEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLEMGPDEY ::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_208 YEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLVS 370 380 390 400 410 430 440 450 460 470 pF1KE3 EEMEEEEEEEEEEDEDDDSADMDESDEDDEEERRRRVFDVPIRRRRCSRLF >>XP_011518283 (OMIM: 609089) PREDICTED: F-box only prot (415 aa) initn: 2841 init1: 2841 opt: 2841 Z-score: 2030.1 bits: 384.8 E(85289): 2.4e-106 Smith-Waterman score: 2841; 100.0% identity (100.0% similar) in 413 aa overlap (1-413:1-413) 10 20 30 40 50 60 pF1KE3 MAAMETETAPLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MAAMETETAPLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 WLISEEEKTQKNQCWKSLFIDTYSDVGRYIDHYAAIKKAWDDLKKYLEPRCPRMVLSLKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 WLISEEEKTQKNQCWKSLFIDTYSDVGRYIDHYAAIKKAWDDLKKYLEPRCPRMVLSLKE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 GAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 AGGFQQRQGLKYCLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 AGGFQQRQGLKYCLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 IGATFTDWFTSYVKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 IGATFTDWFTSYVKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVH 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 PPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRV 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 YEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLEMGPDEY ::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 YEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLFW 370 380 390 400 410 430 440 450 460 470 pF1KE3 EEMEEEEEEEEEEDEDDDSADMDESDEDDEEERRRRVFDVPIRRRRCSRLF >>XP_011518282 (OMIM: 609089) PREDICTED: F-box only prot (479 aa) initn: 2841 init1: 2841 opt: 2841 Z-score: 2029.3 bits: 384.9 E(85289): 2.7e-106 Smith-Waterman score: 2841; 100.0% identity (100.0% similar) in 413 aa overlap (1-413:1-413) 10 20 30 40 50 60 pF1KE3 MAAMETETAPLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MAAMETETAPLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 WLISEEEKTQKNQCWKSLFIDTYSDVGRYIDHYAAIKKAWDDLKKYLEPRCPRMVLSLKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 WLISEEEKTQKNQCWKSLFIDTYSDVGRYIDHYAAIKKAWDDLKKYLEPRCPRMVLSLKE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 GAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 AGGFQQRQGLKYCLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 AGGFQQRQGLKYCLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 IGATFTDWFTSYVKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 IGATFTDWFTSYVKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVH 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 PPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRV 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 YEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLEMGPDEY ::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 YEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLPRVLSFS 370 380 390 400 410 420 430 440 450 460 470 pF1KE3 EEMEEEEEEEEEEDEDDDSADMDESDEDDEEERRRRVFDVPIRRRRCSRLF XP_011 PGTCVFDTLSHHVRSPATMKPSCRRDHVETSHRDRGRHPGAPAVSDSRYLDHPARVPDM 430 440 450 460 470 >>XP_016873022 (OMIM: 609089) PREDICTED: F-box only prot (309 aa) initn: 2115 init1: 2115 opt: 2115 Z-score: 1518.0 bits: 289.6 E(85289): 8.2e-78 Smith-Waterman score: 2115; 100.0% identity (100.0% similar) in 309 aa overlap (163-471:1-309) 140 150 160 170 180 190 pF1KE3 QIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTAAGGFQQRQGLKY :::::::::::::::::::::::::::::: XP_016 MALSNHYRSEDLLDVDTAAGGFQQRQGLKY 10 20 30 200 210 220 230 240 250 pF1KE3 CLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFIIGATFTDWFTSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 CLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFIIGATFTDWFTSY 40 50 60 70 80 90 260 270 280 290 300 310 pF1KE3 VKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVHPPHYFFTYRIRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVHPPHYFFTYRIRI 100 110 120 130 140 150 320 330 340 350 360 370 pF1KE3 EMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRVYEYTSCTTFSTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 EMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRVYEYTSCTTFSTT 160 170 180 190 200 210 380 390 400 410 420 430 pF1KE3 SGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLEMGPDEYEEMEEEEEEEEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLEMGPDEYEEMEEEEEEEEE 220 230 240 250 260 270 440 450 460 470 pF1KE3 EDEDDDSADMDESDEDDEEERRRRVFDVPIRRRRCSRLF ::::::::::::::::::::::::::::::::::::::: XP_016 EDEDDDSADMDESDEDDEEERRRRVFDVPIRRRRCSRLF 280 290 300 >>XP_011518284 (OMIM: 609089) PREDICTED: F-box only prot (317 aa) initn: 1718 init1: 1718 opt: 1718 Z-score: 1237.0 bits: 237.6 E(85289): 3.7e-62 Smith-Waterman score: 1718; 100.0% identity (100.0% similar) in 251 aa overlap (163-413:1-251) 140 150 160 170 180 190 pF1KE3 QIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTAAGGFQQRQGLKY :::::::::::::::::::::::::::::: XP_011 MALSNHYRSEDLLDVDTAAGGFQQRQGLKY 10 20 30 200 210 220 230 240 250 pF1KE3 CLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFIIGATFTDWFTSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 CLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFIIGATFTDWFTSY 40 50 60 70 80 90 260 270 280 290 300 310 pF1KE3 VKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVHPPHYFFTYRIRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVHPPHYFFTYRIRI 100 110 120 130 140 150 320 330 340 350 360 370 pF1KE3 EMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRVYEYTSCTTFSTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 EMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRVYEYTSCTTFSTT 160 170 180 190 200 210 380 390 400 410 420 430 pF1KE3 SGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLEMGPDEYEEMEEEEEEEEE ::::::::::::::::::::::::::::::::::::::::: XP_011 SGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLPRVLSFSPGTCVFDTLSHH 220 230 240 250 260 270 440 450 460 470 pF1KE3 EDEDDDSADMDESDEDDEEERRRRVFDVPIRRRRCSRLF XP_011 VRSPATMKPSCRRDHVETSHRDRGRHPGAPAVSDSRYLDHPARVPDM 280 290 300 310 471 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:56:50 2016 done: Sun Nov 6 05:56:51 2016 Total Scan time: 9.400 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]