FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2048, 669 aa 1>>>pF1KE2048 669 - 669 aa - 669 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 11.0537+/-0.000587; mu= -3.7692+/- 0.037 mean_var=528.9409+/-113.349, 0's: 0 Z-trim(118.4): 114 B-trim: 0 in 0/55 Lambda= 0.055766 statistics sampled from 31243 (31357) to 31243 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.674), E-opt: 0.2 (0.368), width: 16 Scan time: 12.970 The best scores are: opt bits E(85289) NP_006319 (OMIM: 612409) RNA-binding protein 14 is ( 669) 4342 364.9 5.5e-100 NP_001185765 (OMIM: 612409) RNA-binding protein 14 ( 156) 979 93.5 6.3e-19 NP_001185766 (OMIM: 612409) RNA-binding protein 14 ( 119) 743 74.4 2.7e-13 NP_002887 (OMIM: 602571) RNA-binding protein 4 iso ( 364) 471 53.1 2.1e-06 NP_001185773 (OMIM: 602571) RNA-binding protein 4 ( 173) 401 47.1 6.6e-05 NP_001185772 (OMIM: 602571) RNA-binding protein 4 ( 143) 395 46.5 8.3e-05 >>NP_006319 (OMIM: 612409) RNA-binding protein 14 isofor (669 aa) initn: 4342 init1: 4342 opt: 4342 Z-score: 1916.1 bits: 364.9 E(85289): 5.5e-100 Smith-Waterman score: 4342; 100.0% identity (100.0% similar) in 669 aa overlap (1-669:1-669) 10 20 30 40 50 60 pF1KE2 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHME 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 KEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGLAVQSGDKTKKPGAGDTAFPGTGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 KEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGLAVQSGDKTKKPGAGDTAFPGTGG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 FSATFDYQQAFGNSTGGFDGQARQPTPPFFGRDRSPLRRSPPRASYVAPLTAQPATYRAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 FSATFDYQQAFGNSTGGFDGQARQPTPPFFGRDRSPLRRSPPRASYVAPLTAQPATYRAQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 PSVSLGAAYRAQPSASLGVGYRTQPMTAQAASYRAQPSVSLGAPYRGQLASPSSQSAAAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 PSVSLGAAYRAQPSASLGVGYRTQPMTAQAASYRAQPSVSLGAPYRGQLASPSSQSAAAS 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 SLGPYGGAQPSASALSSYGGQAAAASSLNSYGAQGSSLASYGNQPSSYGAQAASSYGVRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 SLGPYGGAQPSASALSSYGGQAAAASSLNSYGAQGSSLASYGNQPSSYGAQAASSYGVRA 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 AASSYNTQGAASSLGSYGAQAASYGAQSAASSLAYGAQAASYNAQPSASYNAQSAPYAAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 AASSYNTQGAASSLGSYGAQAASYGAQSAASSLAYGAQAASYNAQPSASYNAQSAPYAAQ 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE2 QAASYSSQPAAYVAQPATAAAYASQPAAYAAQATTPMAGSYGAQPVVQTQLNSYGAQASM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 QAASYSSQPAAYVAQPATAAAYASQPAAYAAQATTPMAGSYGAQPVVQTQLNSYGAQASM 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE2 GLSGSYGAQSAAAATGSYGAAAAYGAQPSATLAAPYRTQSSASLAASYAAQQHPQAAASY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 GLSGSYGAQSAAAATGSYGAAAAYGAQPSATLAAPYRTQSSASLAASYAAQQHPQAAASY 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE2 RGQPGNAYDGAGQPSAAYLSMSQGAVANANSTPPPYERTRLSPPRASYDDPYKKAVAMSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 RGQPGNAYDGAGQPSAAYLSMSQGAVANANSTPPPYERTRLSPPRASYDDPYKKAVAMSK 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE2 RYGSDRRLAELSDYRRLSESQLSFRRSPTKSSLDYRRLPDAHSDYARYSGSYNDYLRAAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 RYGSDRRLAELSDYRRLSESQLSFRRSPTKSSLDYRRLPDAHSDYARYSGSYNDYLRAAQ 610 620 630 640 650 660 pF1KE2 MHSGYQRRM ::::::::: NP_006 MHSGYQRRM >>NP_001185765 (OMIM: 612409) RNA-binding protein 14 iso (156 aa) initn: 979 init1: 979 opt: 979 Z-score: 460.8 bits: 93.5 E(85289): 6.3e-19 Smith-Waterman score: 979; 100.0% identity (100.0% similar) in 150 aa overlap (1-150:1-150) 10 20 30 40 50 60 pF1KE2 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHME 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 KEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGLAVQSGDKTKKPGAGDTAFPGTGG :::::::::::::::::::::::::::::: NP_001 KEADAKAAIAQLNGKEVKGKRINVELSTKGMVPTGV 130 140 150 >>NP_001185766 (OMIM: 612409) RNA-binding protein 14 iso (119 aa) initn: 743 init1: 743 opt: 743 Z-score: 359.5 bits: 74.4 E(85289): 2.7e-13 Smith-Waterman score: 743; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112) 10 20 30 40 50 60 pF1KE2 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHME :::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKGMVPTGV 70 80 90 100 110 130 140 150 160 170 180 pF1KE2 KEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGLAVQSGDKTKKPGAGDTAFPGTGG >>NP_002887 (OMIM: 602571) RNA-binding protein 4 isoform (364 aa) initn: 505 init1: 322 opt: 471 Z-score: 235.9 bits: 53.1 E(85289): 2.1e-06 Smith-Waterman score: 487; 34.3% identity (59.8% similar) in 321 aa overlap (1-319:2-305) 10 20 30 40 50 pF1KE2 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHE .:.:.::. ..: .:. .:: :: :. : ..:...:::......: ::. :: .. NP_002 MVKLFIGNLP-REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYK 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 LRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHM :. : . :: :. . .. :. :::.: .::..:::. ::. : :::::.::::::::: NP_002 LH-GVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHM 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE2 EKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGLAVQSG-DKTKKPGAGDTAFP-G :. :: :: :.. : .:::..:.:::. . .::.. ::: . : : . : NP_002 ERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPID 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE2 TGGFSATFDYQQAFGNSTGGFDGQARQPTPPFFGRDRSPLRRSPPRASYVAPLTAQPATY .: : : . .... :. .: : .: . : . .: : : : NP_002 RSGRVA--DLTEQYNEQYGA----VRTPYTMSYG---DSLYYN---NAYGA-LDAYYKRC 180 190 200 210 220 240 250 260 270 280 290 pF1KE2 RAQPSVSLGAAYRAQPSASLGVGYRTQPMTAQAASYRAQPSVSLGAPYRGQLASPSSQSA :: : :: :. :.. ..: :.:: :: .: :.: .: NP_002 RAARSYEAVAAAAASVYNYAEQTLSQLPQVQNTAMASHLTSTSLD-PYDRHLL-PTSGAA 230 240 250 260 270 280 300 310 320 330 340 350 pF1KE2 AASSLGPYGGAQPSASALSSYGGQAAAASSLNSYGAQGSSLASYGNQPSSYGAQAASSYG :... . ..: .:.. : :: NP_002 ATAAAAAAAAAAVTAASTSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNS 290 300 310 320 330 340 >>NP_001185773 (OMIM: 602571) RNA-binding protein 4 isof (173 aa) initn: 359 init1: 256 opt: 401 Z-score: 209.0 bits: 47.1 E(85289): 6.6e-05 Smith-Waterman score: 401; 44.3% identity (74.3% similar) in 140 aa overlap (1-140:2-139) 10 20 30 40 50 pF1KE2 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHE .:.:.::. ..: .:. .:: :: :. : ..:...:::......: ::. :: .. NP_001 MVKLFIGNLP-REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYK 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 LRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHM :. : . :: :. . .. :. :::.: .::..:::. ::. : :::::.::::::::: NP_001 LH-GVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHM 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE2 EKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGLAVQSGDKTKKPGAGDTAFPGTG :. :: :: :.. : .:: NP_001 ERAEDAVEAIRGLDNTEFQGKITPVTEGYCCCNKGHTYIFKNCNLILESRKSRRC 120 130 140 150 160 170 >>NP_001185772 (OMIM: 602571) RNA-binding protein 4 isof (143 aa) initn: 353 init1: 250 opt: 395 Z-score: 207.3 bits: 46.5 E(85289): 8.3e-05 Smith-Waterman score: 395; 43.9% identity (74.1% similar) in 139 aa overlap (1-139:2-138) 10 20 30 40 50 pF1KE2 MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHE .:.:.::. ..: .:. .:: :: :. : ..:...:::......: ::. :: .. NP_001 MVKLFIGNLP-REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYK 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 LRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHM :. : . :: :. . .. :. :::.: .::..:::. ::. : :::::.::::::::: NP_001 LH-GVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHM 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE2 EKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGLAVQSGDKTKKPGAGDTAFPGTG :. :: :: :.. : .: NP_001 ERAEDAVEAIRGLDNTEFQGGMCVG 120 130 140 669 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 20:32:17 2016 done: Sun Nov 6 20:32:19 2016 Total Scan time: 12.970 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]