FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1953, 509 aa 1>>>pF1KE1953 509 - 509 aa - 509 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3735+/-0.00043; mu= 18.3223+/- 0.027 mean_var=73.9746+/-14.132, 0's: 0 Z-trim(110.5): 16 B-trim: 21 in 1/54 Lambda= 0.149119 statistics sampled from 18834 (18841) to 18834 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.589), E-opt: 0.2 (0.221), width: 16 Scan time: 9.240 The best scores are: opt bits E(85289) NP_065861 (OMIM: 611023,616539) tRNA (guanine(37)- ( 509) 3364 733.6 3.3e-211 XP_011535319 (OMIM: 611023,616539) PREDICTED: tRNA ( 536) 3332 726.7 4.1e-209 XP_005267973 (OMIM: 611023,616539) PREDICTED: tRNA ( 537) 3332 726.7 4.1e-209 NP_060426 (OMIM: 611244) tRNA wybutosine-synthesiz ( 448) 153 42.7 0.0027 >>NP_065861 (OMIM: 611023,616539) tRNA (guanine(37)-N1)- (509 aa) initn: 3364 init1: 3364 opt: 3364 Z-score: 3912.8 bits: 733.6 E(85289): 3.3e-211 Smith-Waterman score: 3364; 99.8% identity (100.0% similar) in 509 aa overlap (1-509:1-509) 10 20 30 40 50 60 pF1KE1 MVLWILWRPFGFSGRFLKLESHSITESKSLIPVAWTSLTQMLLEAPGIFLLGQRKRFSTM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_065 MVLWILWRPFGFSGRFLKLESHSITESKSLIPVAWTSLTQMLLEAPGIFLLGQRKRFSTM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 PETETHERETELFSPPSDVRGMTKLDRTAFKKTVNIPVLKVRKEIVSKLMRSLKRAALQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_065 PETETHERETELFSPPSDVRGMTKLDRTAFKKTVNIPVLKVRKEIVSKLMRSLKRAALQR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 PGIRRVIEDPEDKESRLIMLDPYKIFTHDSFEKAELSVLEQLNVSPQISKYNLELTYEHF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_065 PGIRRVIEDPEDKESRLIMLDPYKIFTHDSFEKAELSVLEQLNVSPQISKYNLELTYEHF 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 KSEEILRAVLPEGQDVTSGFSRIGHIAHLNLRDHQLPFKHLIGQVMIDKNPGITSAVNKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_065 KSEEILRAVLPEGQDVTSGFSRIGHIAHLNLRDHQLPFKHLIGQVMIDKNPGITSAVNKI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 NNIDNMYRNFQMEVLSGEQNMMTKVRENNYTYEFDFSKVYWNPRLSTEHSRITELLKPGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_065 NNIDNMYRNFQMEVLSGEQNMMTKVRENNYTYEFDFSKVYWNPRLSTEHSRITELLKPGD 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 VLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHKWLLYNCKLNKVDQKVKVFNLDGKDFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_065 VLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHKWLLYNCKLNKVDQKVKVFNLDGKDFL 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 QGPVKEELMQLLGLSKERKPSVHVVMNLPAKAIEFLSAFKWLLDGQPCSSEFLPIVHCYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_065 QGPVKEELMQLLGLSKERKPSVHVVMNLPAKAIEFLSAFKWLLDGQPCSSEFLPIVHCYS 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE1 FSKDANPVEDVRQRAGAVLGISLEACSSVHLVRNVAPNKEMLCITFQIPASVLYKNQTRN :::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::: NP_065 FSKDANPAEDVRQRAGAVLGISLEACSSVHLVRNVAPNKEMLCITFQIPASVLYKNQTRN 430 440 450 460 470 480 490 500 pF1KE1 PENHEDPPLKRQRTAEAFSDEKTQIVSNT ::::::::::::::::::::::::::::: NP_065 PENHEDPPLKRQRTAEAFSDEKTQIVSNT 490 500 >>XP_011535319 (OMIM: 611023,616539) PREDICTED: tRNA (gu (536 aa) initn: 3332 init1: 3332 opt: 3332 Z-score: 3875.2 bits: 726.7 E(85289): 4.1e-209 Smith-Waterman score: 3332; 99.8% identity (100.0% similar) in 505 aa overlap (5-509:32-536) 10 20 30 pF1KE1 MVLWILWRPFGFSGRFLKLESHSITESKSLIPVA :::::::::::::::::::::::::::::: XP_011 VQGRYQPAQGCSLPCAAWAQKHREVTHPPRILWRPFGFSGRFLKLESHSITESKSLIPVA 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE1 WTSLTQMLLEAPGIFLLGQRKRFSTMPETETHERETELFSPPSDVRGMTKLDRTAFKKTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 WTSLTQMLLEAPGIFLLGQRKRFSTMPETETHERETELFSPPSDVRGMTKLDRTAFKKTV 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE1 NIPVLKVRKEIVSKLMRSLKRAALQRPGIRRVIEDPEDKESRLIMLDPYKIFTHDSFEKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NIPVLKVRKEIVSKLMRSLKRAALQRPGIRRVIEDPEDKESRLIMLDPYKIFTHDSFEKA 130 140 150 160 170 180 160 170 180 190 200 210 pF1KE1 ELSVLEQLNVSPQISKYNLELTYEHFKSEEILRAVLPEGQDVTSGFSRIGHIAHLNLRDH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ELSVLEQLNVSPQISKYNLELTYEHFKSEEILRAVLPEGQDVTSGFSRIGHIAHLNLRDH 190 200 210 220 230 240 220 230 240 250 260 270 pF1KE1 QLPFKHLIGQVMIDKNPGITSAVNKINNIDNMYRNFQMEVLSGEQNMMTKVRENNYTYEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QLPFKHLIGQVMIDKNPGITSAVNKINNIDNMYRNFQMEVLSGEQNMMTKVRENNYTYEF 250 260 270 280 290 300 280 290 300 310 320 330 pF1KE1 DFSKVYWNPRLSTEHSRITELLKPGDVLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 DFSKVYWNPRLSTEHSRITELLKPGDVLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHK 310 320 330 340 350 360 340 350 360 370 380 390 pF1KE1 WLLYNCKLNKVDQKVKVFNLDGKDFLQGPVKEELMQLLGLSKERKPSVHVVMNLPAKAIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 WLLYNCKLNKVDQKVKVFNLDGKDFLQGPVKEELMQLLGLSKERKPSVHVVMNLPAKAIE 370 380 390 400 410 420 400 410 420 430 440 450 pF1KE1 FLSAFKWLLDGQPCSSEFLPIVHCYSFSKDANPVEDVRQRAGAVLGISLEACSSVHLVRN :::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::: XP_011 FLSAFKWLLDGQPCSSEFLPIVHCYSFSKDANPAEDVRQRAGAVLGISLEACSSVHLVRN 430 440 450 460 470 480 460 470 480 490 500 pF1KE1 VAPNKEMLCITFQIPASVLYKNQTRNPENHEDPPLKRQRTAEAFSDEKTQIVSNT ::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VAPNKEMLCITFQIPASVLYKNQTRNPENHEDPPLKRQRTAEAFSDEKTQIVSNT 490 500 510 520 530 >>XP_005267973 (OMIM: 611023,616539) PREDICTED: tRNA (gu (537 aa) initn: 3332 init1: 3332 opt: 3332 Z-score: 3875.2 bits: 726.7 E(85289): 4.1e-209 Smith-Waterman score: 3332; 99.8% identity (100.0% similar) in 505 aa overlap (5-509:33-537) 10 20 30 pF1KE1 MVLWILWRPFGFSGRFLKLESHSITESKSLIPVA :::::::::::::::::::::::::::::: XP_005 RALFAANSDDVIEDPPIHPRPTSDRYRSGRILWRPFGFSGRFLKLESHSITESKSLIPVA 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE1 WTSLTQMLLEAPGIFLLGQRKRFSTMPETETHERETELFSPPSDVRGMTKLDRTAFKKTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 WTSLTQMLLEAPGIFLLGQRKRFSTMPETETHERETELFSPPSDVRGMTKLDRTAFKKTV 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE1 NIPVLKVRKEIVSKLMRSLKRAALQRPGIRRVIEDPEDKESRLIMLDPYKIFTHDSFEKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 NIPVLKVRKEIVSKLMRSLKRAALQRPGIRRVIEDPEDKESRLIMLDPYKIFTHDSFEKA 130 140 150 160 170 180 160 170 180 190 200 210 pF1KE1 ELSVLEQLNVSPQISKYNLELTYEHFKSEEILRAVLPEGQDVTSGFSRIGHIAHLNLRDH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 ELSVLEQLNVSPQISKYNLELTYEHFKSEEILRAVLPEGQDVTSGFSRIGHIAHLNLRDH 190 200 210 220 230 240 220 230 240 250 260 270 pF1KE1 QLPFKHLIGQVMIDKNPGITSAVNKINNIDNMYRNFQMEVLSGEQNMMTKVRENNYTYEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 QLPFKHLIGQVMIDKNPGITSAVNKINNIDNMYRNFQMEVLSGEQNMMTKVRENNYTYEF 250 260 270 280 290 300 280 290 300 310 320 330 pF1KE1 DFSKVYWNPRLSTEHSRITELLKPGDVLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 DFSKVYWNPRLSTEHSRITELLKPGDVLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHK 310 320 330 340 350 360 340 350 360 370 380 390 pF1KE1 WLLYNCKLNKVDQKVKVFNLDGKDFLQGPVKEELMQLLGLSKERKPSVHVVMNLPAKAIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 WLLYNCKLNKVDQKVKVFNLDGKDFLQGPVKEELMQLLGLSKERKPSVHVVMNLPAKAIE 370 380 390 400 410 420 400 410 420 430 440 450 pF1KE1 FLSAFKWLLDGQPCSSEFLPIVHCYSFSKDANPVEDVRQRAGAVLGISLEACSSVHLVRN :::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::: XP_005 FLSAFKWLLDGQPCSSEFLPIVHCYSFSKDANPAEDVRQRAGAVLGISLEACSSVHLVRN 430 440 450 460 470 480 460 470 480 490 500 pF1KE1 VAPNKEMLCITFQIPASVLYKNQTRNPENHEDPPLKRQRTAEAFSDEKTQIVSNT ::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 VAPNKEMLCITFQIPASVLYKNQTRNPENHEDPPLKRQRTAEAFSDEKTQIVSNT 490 500 510 520 530 >>NP_060426 (OMIM: 611244) tRNA wybutosine-synthesizing (448 aa) initn: 119 init1: 96 opt: 153 Z-score: 180.2 bits: 42.7 E(85289): 0.0027 Smith-Waterman score: 153; 25.5% identity (57.7% similar) in 149 aa overlap (248-393:185-332) 220 230 240 250 260 270 pF1KE1 FKHLIGQVMIDKNPGITSAVNKINNIDNMYRNFQMEVLSGEQNMMTKVRENNYTYEFDFS :. . .: :... . .: .:. :.:: . NP_060 NLGPELWETVALALGVQRLAKRGRVSPDGTRTPAVTLLLGDHGWVEHV-DNGIRYKFDVT 160 170 180 190 200 210 280 290 300 310 320 330 pF1KE1 KVYWNPRLSTEHSRITELLKPGDVLFDVFAGVGPFAIP--VAKKNCTVFANDLNPESHKW . ... ::. :.. : :.:: :..::.: :..: : : : . ::.. NP_060 QCMFSFGNITEKLRVASLSCAGEVLVDLYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVA 220 230 240 250 260 270 340 350 360 370 380 390 pF1KE1 LLYNCKLNKVDQKVKVFNLDGKDFLQGPVKEE-LMQLLGLSKERKPSVHVVMNLPAKAIE : : ..: : .. .. :.. . . . .. .. :. :.: : . :. : .: NP_060 LRNNLEINGVADRCQIHFGDNRKLKLSNIADRVILGLIPSSEEGWPIACQVLRQDAGGIL 280 290 300 310 320 330 400 410 420 430 440 450 pF1KE1 FLSAFKWLLDGQPCSSEFLPIVHCYSFSKDANPVEDVRQRAGAVLGISLEACSSVHLVRN NP_060 HIHQNVESFPGKNLQALGVSKVEKEHWLYPQQITTNQWKNGATRDSRGKMLSPATKPEWQ 340 350 360 370 380 390 509 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 20:39:44 2016 done: Sun Nov 6 20:39:45 2016 Total Scan time: 9.240 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]