FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1726, 236 aa 1>>>pF1KE1726 236 - 236 aa - 236 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 11.1510+/-0.000338; mu= -9.8699+/- 0.021 mean_var=330.1772+/-67.303, 0's: 0 Z-trim(125.4): 2 B-trim: 0 in 0/61 Lambda= 0.070583 statistics sampled from 49025 (49027) to 49025 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.843), E-opt: 0.2 (0.575), width: 16 Scan time: 8.250 The best scores are: opt bits E(85289) NP_001030312 (OMIM: 603819) steroid receptor RNA a ( 236) 1607 175.8 5.5e-44 NP_001240693 (OMIM: 603819) steroid receptor RNA a ( 208) 694 82.8 4.9e-16 >>NP_001030312 (OMIM: 603819) steroid receptor RNA activ (236 aa) initn: 1607 init1: 1607 opt: 1607 Z-score: 910.6 bits: 175.8 E(85289): 5.5e-44 Smith-Waterman score: 1607; 100.0% identity (100.0% similar) in 236 aa overlap (1-236:1-236) 10 20 30 40 50 60 pF1KE1 MTRCPAGQAEVEMAELYVKPGNKERGWNDPPQFSYGLQTQAGGPRRSLLTKRVAAPQDGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MTRCPAGQAEVEMAELYVKPGNKERGWNDPPQFSYGLQTQAGGPRRSLLTKRVAAPQDGS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 PRVPASETSPGPPPMGPPPPSSKAPRSPPVGSGPASGVEPTSFPVESEAVMEDVLRPLEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PRVPASETSPGPPPMGPPPPSSKAPRSPPVGSGPASGVEPTSFPVESEAVMEDVLRPLEQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ALEDCRGHTRKQVCDDISRRLALLQEQWAGGKLSIPVKKRMALLVQELSSHRWDAADDIH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ALEDCRGHTRKQVCDDISRRLALLQEQWAGGKLSIPVKKRMALLVQELSSHRWDAADDIH 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 RSLMVDHVTEVSQWMVGVKRLIAEKRSLFSEEAANEEKSAATAEKNHTIPGFQQAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RSLMVDHVTEVSQWMVGVKRLIAEKRSLFSEEAANEEKSAATAEKNHTIPGFQQAS 190 200 210 220 230 >>NP_001240693 (OMIM: 603819) steroid receptor RNA activ (208 aa) initn: 760 init1: 689 opt: 694 Z-score: 408.9 bits: 82.8 E(85289): 4.9e-16 Smith-Waterman score: 718; 59.8% identity (68.1% similar) in 229 aa overlap (13-236:1-208) 10 20 30 40 50 pF1KE1 MTRCPAGQAEVEMAELYVKPGNKERGWNDPPQFSYGLQTQAGGPRRSLLTKRVAAPQDG- :::::::::.. : . : . : : :. . :: NP_001 MAELYVKPGERSRR-----ARALGCRPGLGWGRLRRLVWTLCLPQPQY 10 20 30 40 60 70 80 90 100 110 pF1KE1 --SPRVPASETSPGPPPMGPPPPSSKAPRSPPVGSGPASGVEPTS--FPVESEAVMEDVL . . : : :.:: .. .. . :: .: : ..: . .: : : NP_001 KLTVEFRARFTHPSPP-QATRNAAGTTRRSSHTGCRP-RPADPGARCLPRGSPHPRMD-- 50 60 70 80 90 120 130 140 150 160 170 pF1KE1 RPLEQALEDCRGHTRKQVCDDISRRLALLQEQWAGGKLSIPVKKRMALLVQELSSHRWDA : : ::::::::::::::::::::::::::::::::::::::::::::: NP_001 -PPE-----------KQVCDDISRRLALLQEQWAGGKLSIPVKKRMALLVQELSSHRWDA 100 110 120 130 140 180 190 200 210 220 230 pF1KE1 ADDIHRSLMVDHVTEVSQWMVGVKRLIAEKRSLFSEEAANEEKSAATAEKNHTIPGFQQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ADDIHRSLMVDHVTEVSQWMVGVKRLIAEKRSLFSEEAANEEKSAATAEKNHTIPGFQQA 150 160 170 180 190 200 pF1KE1 S : NP_001 S 236 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 21:31:20 2016 done: Sun Nov 6 21:31:21 2016 Total Scan time: 8.250 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]