FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1616, 127 aa 1>>>pF1KE1616 127 - 127 aa - 127 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8492+/-0.000322; mu= 12.8404+/- 0.020 mean_var=57.2202+/-11.999, 0's: 0 Z-trim(115.2): 37 B-trim: 1893 in 2/52 Lambda= 0.169551 statistics sampled from 25431 (25468) to 25431 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.299), width: 16 Scan time: 4.460 The best scores are: opt bits E(85289) NP_683513 (OMIM: 605240) C-C motif chemokine 28 is ( 127) 881 223.2 9.1e-59 NP_001288802 (OMIM: 605240) C-C motif chemokine 28 ( 127) 881 223.2 9.1e-59 NP_001288803 (OMIM: 605240) C-C motif chemokine 28 ( 127) 881 223.2 9.1e-59 NP_001288804 (OMIM: 605240) C-C motif chemokine 28 ( 80) 580 149.4 9.1e-37 NP_006655 (OMIM: 604833) C-C motif chemokine 27 pr ( 112) 219 61.2 4.6e-10 NP_001188288 (OMIM: 602565) C-C motif chemokine 25 ( 149) 146 43.4 0.00014 XP_016882611 (OMIM: 602565) PREDICTED: C-C motif c ( 149) 146 43.4 0.00014 XP_016882609 (OMIM: 602565) PREDICTED: C-C motif c ( 150) 142 42.4 0.00027 XP_011526479 (OMIM: 602565) PREDICTED: C-C motif c ( 150) 142 42.4 0.00027 XP_016882610 (OMIM: 602565) PREDICTED: C-C motif c ( 150) 142 42.4 0.00027 NP_005615 (OMIM: 602565) C-C motif chemokine 25 is ( 150) 142 42.4 0.00027 XP_016882608 (OMIM: 602565) PREDICTED: C-C motif c ( 210) 142 42.5 0.00036 >>NP_683513 (OMIM: 605240) C-C motif chemokine 28 isofor (127 aa) initn: 881 init1: 881 opt: 881 Z-score: 1176.1 bits: 223.2 E(85289): 9.1e-59 Smith-Waterman score: 881; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127) 10 20 30 40 50 60 pF1KE1 MQQRGLAIVALAVCAALHASEAILPIASSCCTEVSHHISRRLLERVNMCRIQRADGDCDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_683 MQQRGLAIVALAVCAALHASEAILPIASSCCTEVSHHISRRLLERVNMCRIQRADGDCDL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 AAVILHVKRRRICVSPHNHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQGKHET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_683 AAVILHVKRRRICVSPHNHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQGKHET 70 80 90 100 110 120 pF1KE1 YGHKTPY ::::::: NP_683 YGHKTPY >>NP_001288802 (OMIM: 605240) C-C motif chemokine 28 iso (127 aa) initn: 881 init1: 881 opt: 881 Z-score: 1176.1 bits: 223.2 E(85289): 9.1e-59 Smith-Waterman score: 881; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127) 10 20 30 40 50 60 pF1KE1 MQQRGLAIVALAVCAALHASEAILPIASSCCTEVSHHISRRLLERVNMCRIQRADGDCDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MQQRGLAIVALAVCAALHASEAILPIASSCCTEVSHHISRRLLERVNMCRIQRADGDCDL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 AAVILHVKRRRICVSPHNHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQGKHET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AAVILHVKRRRICVSPHNHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQGKHET 70 80 90 100 110 120 pF1KE1 YGHKTPY ::::::: NP_001 YGHKTPY >>NP_001288803 (OMIM: 605240) C-C motif chemokine 28 iso (127 aa) initn: 881 init1: 881 opt: 881 Z-score: 1176.1 bits: 223.2 E(85289): 9.1e-59 Smith-Waterman score: 881; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127) 10 20 30 40 50 60 pF1KE1 MQQRGLAIVALAVCAALHASEAILPIASSCCTEVSHHISRRLLERVNMCRIQRADGDCDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MQQRGLAIVALAVCAALHASEAILPIASSCCTEVSHHISRRLLERVNMCRIQRADGDCDL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 AAVILHVKRRRICVSPHNHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQGKHET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AAVILHVKRRRICVSPHNHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQGKHET 70 80 90 100 110 120 pF1KE1 YGHKTPY ::::::: NP_001 YGHKTPY >>NP_001288804 (OMIM: 605240) C-C motif chemokine 28 iso (80 aa) initn: 580 init1: 580 opt: 580 Z-score: 781.1 bits: 149.4 E(85289): 9.1e-37 Smith-Waterman score: 580; 100.0% identity (100.0% similar) in 80 aa overlap (48-127:1-80) 20 30 40 50 60 70 pF1KE1 HASEAILPIASSCCTEVSHHISRRLLERVNMCRIQRADGDCDLAAVILHVKRRRICVSPH :::::::::::::::::::::::::::::: NP_001 MCRIQRADGDCDLAAVILHVKRRRICVSPH 10 20 30 80 90 100 110 120 pF1KE1 NHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQGKHETYGHKTPY :::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQGKHETYGHKTPY 40 50 60 70 80 >>NP_006655 (OMIM: 604833) C-C motif chemokine 27 precur (112 aa) initn: 209 init1: 173 opt: 219 Z-score: 301.7 bits: 61.2 E(85289): 4.6e-10 Smith-Waterman score: 219; 39.7% identity (76.7% similar) in 73 aa overlap (23-94:26-98) 10 20 30 40 50 pF1KE1 MQQRGLAIVALAVCAALHASEAILPIASSCCTEVSHH-ISRRLLERVNMCRIQRADG .:: ...:::.. .. .: .::..: . ..:.::: NP_006 MKGPPTFCSLLLLSLLLSPDPTAAFLLPPSTACCTQLYRKPLSDKLLRKVIQVELQEADG 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 DCDLAAVILHVKRRRICVSPHNHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQG :: : : .::. .: ::. :.: ...::.. : : .: NP_006 DCHLQAFVLHLAQRSICIHPQNPSLSQWFEHQERKLHGTLPKLNFGMLRKMG 70 80 90 100 110 120 pF1KE1 KHETYGHKTPY >>NP_001188288 (OMIM: 602565) C-C motif chemokine 25 iso (149 aa) initn: 137 init1: 96 opt: 146 Z-score: 203.4 bits: 43.4 E(85289): 0.00014 Smith-Waterman score: 146; 30.2% identity (62.5% similar) in 96 aa overlap (30-123:30-120) 10 20 30 40 50 60 pF1KE1 MQQRGLAIVALAVCAALHASEAILPIASSCCTEVSHHISRRLLERVNMCRIQRADGDCDL :: . :. .:.:. :::...:.:.: NP_001 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 AAVILHV-KR-RRICVSPHNHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQGKH :.:... :: :..: .:... :.. ::. :. : : ::. .. . : :. NP_001 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDAR-----NKVFAKLHHNTQTFQGPHAVKK 70 80 90 100 110 120 pF1KE1 ETYGHKTPY . :. NP_001 LSSGNSKLSSSKFSNPISSSKRNVSLLISANSGL 120 130 140 >>XP_016882611 (OMIM: 602565) PREDICTED: C-C motif chemo (149 aa) initn: 137 init1: 96 opt: 146 Z-score: 203.4 bits: 43.4 E(85289): 0.00014 Smith-Waterman score: 146; 30.2% identity (62.5% similar) in 96 aa overlap (30-123:30-120) 10 20 30 40 50 60 pF1KE1 MQQRGLAIVALAVCAALHASEAILPIASSCCTEVSHHISRRLLERVNMCRIQRADGDCDL :: . :. .:.:. :::...:.:.: XP_016 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 AAVILHV-KR-RRICVSPHNHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQGKH :.:... :: :..: .:... :.. ::. :. : : ::. .. . : :. XP_016 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDAR-----NKVFAKLHHNTQTFQGPHAVKK 70 80 90 100 110 120 pF1KE1 ETYGHKTPY . :. XP_016 LSSGNSKLSSSKFSNPISSSKRNVSLLISANSGL 120 130 140 >>XP_016882609 (OMIM: 602565) PREDICTED: C-C motif chemo (150 aa) initn: 137 init1: 96 opt: 142 Z-score: 198.0 bits: 42.4 E(85289): 0.00027 Smith-Waterman score: 142; 31.9% identity (61.5% similar) in 91 aa overlap (30-118:30-112) 10 20 30 40 50 60 pF1KE1 MQQRGLAIVALAVCAALHASEAILPIASSCCTEVSHHISRRLLERVNMCRIQRADGDCDL :: . :. .:.:. :::...:.:.: XP_016 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 AAVILHV-KR-RRICVSPHNHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQGKH :.:... :: :..: .:... :.. ::. :. : : :: :.. . : : XP_016 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDAR-----NKVFAKLHH---NTQTFQAGPH 70 80 90 100 110 120 pF1KE1 ETYGHKTPY XP_016 AVKKLSSGNSKLSSSKFSNPISSSKRNVSLLISANSGL 120 130 140 150 >>XP_011526479 (OMIM: 602565) PREDICTED: C-C motif chemo (150 aa) initn: 137 init1: 96 opt: 142 Z-score: 198.0 bits: 42.4 E(85289): 0.00027 Smith-Waterman score: 142; 31.9% identity (61.5% similar) in 91 aa overlap (30-118:30-112) 10 20 30 40 50 60 pF1KE1 MQQRGLAIVALAVCAALHASEAILPIASSCCTEVSHHISRRLLERVNMCRIQRADGDCDL :: . :. .:.:. :::...:.:.: XP_011 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 AAVILHV-KR-RRICVSPHNHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQGKH :.:... :: :..: .:... :.. ::. :. : : :: :.. . : : XP_011 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDAR-----NKVFAKLHH---NTQTFQAGPH 70 80 90 100 110 120 pF1KE1 ETYGHKTPY XP_011 AVKKLSSGNSKLSSSKFSNPISSSKRNVSLLISANSGL 120 130 140 150 >>XP_016882610 (OMIM: 602565) PREDICTED: C-C motif chemo (150 aa) initn: 137 init1: 96 opt: 142 Z-score: 198.0 bits: 42.4 E(85289): 0.00027 Smith-Waterman score: 142; 31.9% identity (61.5% similar) in 91 aa overlap (30-118:30-112) 10 20 30 40 50 60 pF1KE1 MQQRGLAIVALAVCAALHASEAILPIASSCCTEVSHHISRRLLERVNMCRIQRADGDCDL :: . :. .:.:. :::...:.:.: XP_016 MNLWLLACLVAGFLGAWAPAVHTQGVFEDCCLAYHYPIGWAVLRRAWTYRIQEVSGSCNL 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 AAVILHV-KR-RRICVSPHNHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQGKH :.:... :: :..: .:... :.. ::. :. : : :: :.. . : : XP_016 PAAIFYLPKRHRKVCGNPKSREVQRAMKLLDAR-----NKVFAKLHH---NTQTFQAGPH 70 80 90 100 110 120 pF1KE1 ETYGHKTPY XP_016 AVKKLSSGNSKLSSSKFSNPISSSKRNVSLLISANSGL 120 130 140 150 127 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 21:36:30 2016 done: Sun Nov 6 21:36:30 2016 Total Scan time: 4.460 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]