(Circular) (Six-base) MAPSORT of: pFN21AE0168.seq Check: 3611 from: 1 to: 5104 pFN21AE0168 5104 bp With 182 enzymes: SgfI * October 20, 2009 10:45 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 2914 278 Size: 53 83 186 936 1378 2468 Fragments arranged by size: 2468 1378 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2447 1937 Size: 510 4594 Acc65I G'GTAC_C Cuts at: 2425 2425 Size: 5104 AclI AA'CG_TT Cuts at: 1563 3231 3604 1563 Size: 1668 373 3063 Fragments arranged by size: 3063 1668 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2333 3167 4551 4819 1632 Size: 701 834 1384 268 1917 Fragments arranged by size: 1917 1384 834 701 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 4907 AflIII A'CryG_T Cuts at: 1203 2014 4003 4980 1203 Size: 811 1989 977 1327 Fragments arranged by size: 1989 1327 977 811 AgeI A'CCGG_T Cuts at: 2364 3935 2364 Size: 1571 3533 AhdI GACnn_n'nnGTC Cuts at: 3833 3833 Size: 5104 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5104 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5104 AlwNI CAG_nnn'CTG Cuts at: 2847 4419 2847 Size: 1572 3532 ApaLI G'TGCA_C Cuts at: 3161 4317 3161 Size: 1156 3948 ApoI r'AATT_y Cuts at: 1493 2413 2639 2791 4900 1493 Size: 920 226 152 2109 1697 Fragments arranged by size: 2109 1697 920 226 152 AseI AT'TA_AT Cuts at: 160 1032 3658 160 Size: 872 2626 1606 Fragments arranged by size: 2626 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5104 AvaI C'yCGr_G Cuts at: 1870 1943 2429 1870 Size: 73 486 4545 Fragments arranged by size: 4545 486 73 BamHI G'GATC_C Cuts at: 2434 2801 2434 Size: 367 4737 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2127 2425 3880 618 Size: 325 217 627 340 298 1455 1842 Fragments arranged by size: 1842 1455 627 340 325 298 217 BanII G_rGCy'C Cuts at: 1391 2423 1391 Size: 1032 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4133 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3295 3329 1903 Size: 34 1358 34 3678 Fragments arranged by size: 3678 1358 34 34 BciVI GTATCCnnnnn_n' Cuts at: 2996 4206 2996 Size: 1210 3894 BclI T'GATC_A Cuts at: 1548 1548 Size: 5104 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 3715 136 Size: 107 122 71 631 605 2043 1525 Fragments arranged by size: 2043 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5099 5099 Size: 5104 BlpI GC'TnA_GC Cuts at: 2521 2521 Size: 5104 Bme1580I G_kGCm'C Cuts at: 1790 2208 3165 4321 1790 Size: 418 957 1156 2573 Fragments arranged by size: 2573 1156 957 418 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5104 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2835 3793 442 Size: 416 53 83 399 24 1418 958 1753 Fragments arranged by size: 1753 1418 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5104 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 3764 1239 Size: 2525 2579 Bpu10I CC'TnA_GC Cuts at: 2335 2335 Size: 5104 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2243 3229 4094 4392 2243 Size: 986 865 298 2955 Fragments arranged by size: 2955 986 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3767 882 Size: 617 2268 2219 Fragments arranged by size: 2268 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 2895 493 Size: 711 1691 2702 Fragments arranged by size: 2702 1691 711 BsaBI GATnn'nnATC Cuts at: 5098 5098 Size: 5104 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2219 2911 3293 3928 Size: 53 83 186 936 686 692 382 635 Cuts at: 3928 275 Size: 1451 Fragments arranged by size: 1451 936 692 686 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2364 3537 3935 4209 4356 4767 2364 Size: 1173 398 274 147 411 2701 Fragments arranged by size: 2701 1173 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2360 2390 1178 Size: 30 165 30 957 30 3892 Fragments arranged by size: 3892 957 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5104 BseYI C'CCAG_C Cuts at: 4307 4803 4307 Size: 496 4608 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4531 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2554 3315 4343 1540 Size: 275 186 553 761 1028 2301 Fragments arranged by size: 2301 1028 761 553 275 186 BsiHKAI G_wGCw'C Cuts at: 2187 3165 3250 4321 2187 Size: 978 85 1071 2970 Fragments arranged by size: 2970 1071 978 85 BsmI GAATG_Cn' Cuts at: 2399 2615 2708 2399 Size: 216 93 4795 Fragments arranged by size: 4795 216 93 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2187 2208 2423 3165 3250 4321 1391 Size: 399 397 21 215 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 399 397 215 85 21 BspEI T'CCGG_A Cuts at: 4767 4767 Size: 5104 BspHI T'CATG_A Cuts at: 2993 4723 2993 Size: 1730 3374 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2459 844 Size: 1615 3489 BsrBI CCG'CTC Cuts at: 1394 1823 2991 1394 Size: 429 1168 3507 Fragments arranged by size: 3507 1168 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3599 3773 65 Size: 1183 2351 174 1396 Fragments arranged by size: 2351 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2292 2364 3748 3935 1700 Size: 110 482 72 1384 187 2869 Fragments arranged by size: 2869 1384 482 187 110 72 BsrGI T'GTAC_A Cuts at: 96 2160 96 Size: 2064 3040 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5104 BssSI C'ACGA_G Cuts at: 3164 4176 3164 Size: 1012 4092 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5104 BstBI TT'CG_AA Cuts at: 3908 3908 Size: 5104 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5104 BstYI r'GATC_y Cuts at: 1972 2434 2801 3186 3203 4655 4741 4753 5099 Size: 462 367 385 17 1452 86 12 346 Cuts at: 5099 1972 Size: 1977 Fragments arranged by size: 1977 1452 462 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 513 Size: 552 4552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 2344 487 Size: 683 56 1118 3247 Fragments arranged by size: 3247 1118 683 56 BtsI GCAGTG_nn' Cuts at: 2206 2284 2318 2352 2383 2620 3414 3434 2206 Size: 78 34 34 31 237 794 20 3876 Fragments arranged by size: 3876 794 237 78 34 34 31 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5104 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5069 DraI TTT'AAA Cuts at: 2408 2408 Size: 5104 DraIII CAC_nnn'GTG Cuts at: 2137 2137 Size: 5104 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4111 809 Size: 507 2795 1802 Fragments arranged by size: 2795 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2190 2551 3440 Size: 54 1425 50 275 18 360 361 889 Cuts at: 3440 5069 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 361 360 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2551 1537 Size: 275 739 4090 Fragments arranged by size: 4090 739 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3034 1353 Size: 1681 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3691 4065 4211 387 Size: 1064 138 2102 374 146 1280 Fragments arranged by size: 2102 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2333 3167 3764 4551 4819 1239 Size: 393 701 834 597 787 268 1524 Fragments arranged by size: 1524 834 787 701 597 393 268 EcoRI G'AATT_C Cuts at: 2413 2791 2413 Size: 378 4726 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2284 2284 Size: 5104 FspI TGC'GCA Cuts at: 3610 3610 Size: 5104 HaeII r_GCGC'y Cuts at: 1678 4251 1678 Size: 2573 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 3745 3777 3819 3851 1373 Size: 32 135 32 2173 32 42 32 2626 Fragments arranged by size: 2626 2173 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2448 2694 669 Size: 988 281 510 246 3079 Fragments arranged by size: 3079 988 510 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5104 HpaI GTT'AAC Cuts at: 2694 2694 Size: 5104 KpnI G_GTAC'C Cuts at: 2429 2429 Size: 5104 MfeI C'AATT_G Cuts at: 2703 2703 Size: 5104 MluI A'CGCG_T Cuts at: 4980 4980 Size: 5104 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4218 4402 1305 Size: 2913 184 2007 Fragments arranged by size: 2913 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2192 10 Size: 54 1425 343 360 2922 Fragments arranged by size: 2922 1425 360 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2133 3062 3421 3580 518 Size: 648 967 929 359 159 2042 Fragments arranged by size: 2042 967 929 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2520 3197 4345 4590 1606 Size: 914 677 1148 245 2120 Fragments arranged by size: 2120 1148 914 677 245 NaeI GCC'GGC Cuts at: 2294 2294 Size: 5104 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 4552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5104 NgoMIV G'CCGG_C Cuts at: 2292 2292 Size: 5104 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5104 NotI GC'GGCC_GC Cuts at: 2551 2551 Size: 5104 NspI r_CATG'y Cuts at: 1132 1229 2018 2347 2462 4007 1132 Size: 97 789 329 115 1545 2229 Fragments arranged by size: 2229 1545 789 329 115 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5104 PciI A'CATG_T Cuts at: 2014 4003 2014 Size: 1989 3115 PflMI CCAn_nnn'nTGG Cuts at: 1108 2137 1108 Size: 1029 4075 PmeI GTTT'AAAC Cuts at: 2408 2408 Size: 5104 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3173 3205 4686 4718 3173 Size: 32 1481 32 3559 Fragments arranged by size: 3559 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5104 PsiI TTA'TAA Cuts at: 2674 2674 Size: 5104 PstI C_TGCA'G Cuts at: 830 2213 2456 830 Size: 1383 243 3478 Fragments arranged by size: 3478 1383 243 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5104 SalI G'TCGA_C Cuts at: 1936 2446 1936 Size: 510 4594 SbfI CC_TGCA'GG Cuts at: 2456 2456 Size: 5104 ScaI AGT'ACT Cuts at: 3352 5064 3352 Size: 1712 3392 SfcI C'TryA_G Cuts at: 826 1045 2209 2452 3587 4268 4459 826 Size: 219 1164 243 1135 681 191 1471 Fragments arranged by size: 1471 1164 1135 681 243 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5104 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5104 SmaI CCC'GGG Cuts at: 1872 2431 1872 Size: 559 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2258 3208 4109 4371 820 Size: 197 926 315 950 901 262 1553 Fragments arranged by size: 1553 950 926 901 315 262 197 SnaBI TAC'GTA Cuts at: 493 2895 493 Size: 2402 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5104 SphI G_CATG'C Cuts at: 1132 2347 2462 1132 Size: 1215 115 3774 Fragments arranged by size: 3774 1215 115 SspI AAT'ATT Cuts at: 5 52 3028 5 Size: 47 2976 2081 Fragments arranged by size: 2976 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5104 StyI C'CwwG_G Cuts at: 513 1065 2543 513 Size: 552 1478 3074 Fragments arranged by size: 3074 1478 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2169 3131 3148 3301 3486 3931 325 Size: 1255 589 962 17 153 185 445 1498 Fragments arranged by size: 1498 1255 962 589 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2017 2160 3350 Size: 274 80 33 51 1443 40 143 1190 Cuts at: 3350 5062 96 Size: 1712 138 Fragments arranged by size: 1712 1443 1190 274 143 138 80 51 40 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5064 5096 5064 Size: 32 5072 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5104 XbaI T'CTAG_A Cuts at: 2440 2440 Size: 5104 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5104 XmaI C'CCGG_G Cuts at: 1870 2429 1870 Size: 559 4545 XmnI GAAnn'nnTTC Cuts at: 3233 3233 Size: 5104 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 2912 276 Size: 53 83 186 936 1378 2468 Fragments arranged by size: 2468 1378 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI Eco57MI EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NcoI NdeI NgoMIV NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI BsiWI BsmBI BstXI BstZ17I Bsu36I EcoICRI EcoNI EcoO109I EcoRV FseI FspAI KasI NarI NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI PvuII RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI