Result of FASTA (omim) for
pFN21AB8748
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8748, 169 aa
1>>>pF1KB8748 169 - 169 aa - 169 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.5639+/-0.000386; mu= -10.8559+/- 0.024
mean_var=323.1766+/-64.088, 0's: 0 Z-trim(122.7): 56 B-trim: 0 in 0/55
Lambda= 0.071343
statistics sampled from 41305 (41370) to 41305 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.772), E-opt: 0.2 (0.485), width: 16
Scan time: 5.580
The best scores are: opt bits E(85289)
NP_001091058 (OMIM: 182271) small proline-rich pro ( 169) 1240 139.8 1.9e-33
NP_005407 (OMIM: 182271) small proline-rich protei ( 169) 1240 139.8 1.9e-33
NP_003116 (OMIM: 182266) cornifin-B [Homo sapiens] ( 89) 387 51.8 3.2e-07
NP_001186757 (OMIM: 182265) cornifin-A [Homo sapie ( 89) 373 50.4 8.7e-07
NP_005978 (OMIM: 182265) cornifin-A [Homo sapiens] ( 89) 373 50.4 8.7e-07
XP_016855492 (OMIM: 208250,604283) PREDICTED: prot (1270) 282 42.0 0.0043
NP_001121182 (OMIM: 208250,604283) proteoglycan 4 (1270) 282 42.0 0.0043
XP_016855491 (OMIM: 208250,604283) PREDICTED: prot (1311) 282 42.0 0.0044
NP_001121181 (OMIM: 208250,604283) proteoglycan 4 (1311) 282 42.0 0.0044
NP_001290161 (OMIM: 208250,604283) proteoglycan 4 (1361) 282 42.0 0.0045
NP_001121180 (OMIM: 208250,604283) proteoglycan 4 (1363) 282 42.0 0.0045
NP_005798 (OMIM: 208250,604283) proteoglycan 4 iso (1404) 282 42.0 0.0046
>>NP_001091058 (OMIM: 182271) small proline-rich protein (169 aa)
initn: 1240 init1: 1240 opt: 1240 Z-score: 721.3 bits: 139.8 E(85289): 1.9e-33
Smith-Waterman score: 1240; 99.4% identity (100.0% similar) in 169 aa overlap (1-169:1-169)
10 20 30 40 50 60
pF1KB8 MSSYQQKQTFTPPPQLQQQQVKQPSQPPPQEIFVPTTKEPCHSKVPQPGNTKIPEPGCTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSYQQKQTFTPPPQLQQQQVKQPSQPPPQEIFVPTTKEPCHSKVPQPGNTKIPEPGCTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 VPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGYTKVPEPGSIKVPDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGYTKVPEPGSIKVPDQ
70 80 90 100 110 120
130 140 150 160
pF1KB8 GFIKFPEPGAIKVPEQGYTKVPVPGYTKVPEPCPSTVTPGPAQQKTKQK
::::::::::::::::::::::::::::.::::::::::::::::::::
NP_001 GFIKFPEPGAIKVPEQGYTKVPVPGYTKLPEPCPSTVTPGPAQQKTKQK
130 140 150 160
>>NP_005407 (OMIM: 182271) small proline-rich protein 3 (169 aa)
initn: 1240 init1: 1240 opt: 1240 Z-score: 721.3 bits: 139.8 E(85289): 1.9e-33
Smith-Waterman score: 1240; 99.4% identity (100.0% similar) in 169 aa overlap (1-169:1-169)
10 20 30 40 50 60
pF1KB8 MSSYQQKQTFTPPPQLQQQQVKQPSQPPPQEIFVPTTKEPCHSKVPQPGNTKIPEPGCTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MSSYQQKQTFTPPPQLQQQQVKQPSQPPPQEIFVPTTKEPCHSKVPQPGNTKIPEPGCTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 VPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGYTKVPEPGSIKVPDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGYTKVPEPGSIKVPDQ
70 80 90 100 110 120
130 140 150 160
pF1KB8 GFIKFPEPGAIKVPEQGYTKVPVPGYTKVPEPCPSTVTPGPAQQKTKQK
::::::::::::::::::::::::::::.::::::::::::::::::::
NP_005 GFIKFPEPGAIKVPEQGYTKVPVPGYTKLPEPCPSTVTPGPAQQKTKQK
130 140 150 160
>>NP_003116 (OMIM: 182266) cornifin-B [Homo sapiens] (89 aa)
initn: 375 init1: 375 opt: 387 Z-score: 250.6 bits: 51.8 E(85289): 3.2e-07
Smith-Waterman score: 387; 62.9% identity (73.0% similar) in 89 aa overlap (1-87:1-88)
10 20 30 40 50 60
pF1KB8 MSSYQQKQTFTPPPQLQQQQVKQPSQPPPQEIFVPTTKEPCHSKVPQPGNTKIPEPGCTK
::: :::: :::::::::::::: :::::: .: :::::: :::.: . :.::: :
NP_003 MSSQQQKQPCTPPPQLQQQQVKQPCQPPPQEPCIPKTKEPCHPKVPEPCHPKVPEPCQPK
10 20 30 40 50 60
70 80 90 100 110
pF1KB8 VPEPGCTKVPEPGCTKV--PEPGCTKVPEPGCTKVPEPGCTKVPEPGYTKVPEPGSIKVP
:::: ::::: : .. : :. :. .
NP_003 VPEPCHPKVPEP-CPSIVTPAPAQQKTKQK
70 80
>>NP_001186757 (OMIM: 182265) cornifin-A [Homo sapiens] (89 aa)
initn: 362 init1: 362 opt: 373 Z-score: 242.8 bits: 50.4 E(85289): 8.7e-07
Smith-Waterman score: 373; 61.8% identity (71.9% similar) in 89 aa overlap (1-87:1-88)
10 20 30 40 50 60
pF1KB8 MSSYQQKQTFTPPPQLQQQQVKQPSQPPPQEIFVPTTKEPCHSKVPQPGNTKIPEPGCTK
:.: :::: ::::: :::::::: :::::: .: :::::: :::.: . :.::: :
NP_001 MNSQQQKQPCTPPPQPQQQQVKQPCQPPPQEPCIPKTKEPCHPKVPEPCHPKVPEPCQPK
10 20 30 40 50 60
70 80 90 100 110
pF1KB8 VPEPGCTKVPEPGC--TKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGYTKVPEPGSIKVP
:::: ::::: : : .: :. :. .
NP_001 VPEPCQPKVPEP-CPSTVTPAPAQQKTKQK
70 80
>>NP_005978 (OMIM: 182265) cornifin-A [Homo sapiens] (89 aa)
initn: 362 init1: 362 opt: 373 Z-score: 242.8 bits: 50.4 E(85289): 8.7e-07
Smith-Waterman score: 373; 61.8% identity (71.9% similar) in 89 aa overlap (1-87:1-88)
10 20 30 40 50 60
pF1KB8 MSSYQQKQTFTPPPQLQQQQVKQPSQPPPQEIFVPTTKEPCHSKVPQPGNTKIPEPGCTK
:.: :::: ::::: :::::::: :::::: .: :::::: :::.: . :.::: :
NP_005 MNSQQQKQPCTPPPQPQQQQVKQPCQPPPQEPCIPKTKEPCHPKVPEPCHPKVPEPCQPK
10 20 30 40 50 60
70 80 90 100 110
pF1KB8 VPEPGCTKVPEPGC--TKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGYTKVPEPGSIKVP
:::: ::::: : : .: :. :. .
NP_005 VPEPCQPKVPEP-CPSTVTPAPAQQKTKQK
70 80
>>XP_016855492 (OMIM: 208250,604283) PREDICTED: proteogl (1270 aa)
initn: 284 init1: 109 opt: 282 Z-score: 176.5 bits: 42.0 E(85289): 0.0043
Smith-Waterman score: 282; 36.1% identity (45.6% similar) in 169 aa overlap (6-165:307-472)
10 20 30
pF1KB8 MSSYQQKQTFTPPPQLQQQQVKQPSQPPPQEIFVP
.: . : : . :.:. :.: .:
XP_016 EPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEP-AP
280 290 300 310 320 330
40 50 60 70 80 90
pF1KB8 TTKEPCHS--KVPQPGNTKIPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKV
::::: . : : : : : : : : : : : : :: : : : : : ::
XP_016 TTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTK-
340 350 360 370 380 390
100 110 120 130 140 150
pF1KB8 PEPGCTKVPEPGYTKVPEPGSIKVPDQGFIKFPEPGAIKVPEQGYTKVPVPGYTKVP---
: :: : : :: : . : :. : : : . : : : :.: : :
XP_016 SAPTTTKEPAPTTTK-SAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPT
400 410 420 430 440 450
160
pF1KB8 ---EPCPSTVT-PGPAQQKTKQK
:: :.:. :.:. :
XP_016 TPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTPTTPEKLAPTTPEKPAPTTPEE
460 470 480 490 500 510
>>NP_001121182 (OMIM: 208250,604283) proteoglycan 4 isof (1270 aa)
initn: 284 init1: 109 opt: 282 Z-score: 176.5 bits: 42.0 E(85289): 0.0043
Smith-Waterman score: 282; 36.1% identity (45.6% similar) in 169 aa overlap (6-165:307-472)
10 20 30
pF1KB8 MSSYQQKQTFTPPPQLQQQQVKQPSQPPPQEIFVP
.: . : : . :.:. :.: .:
NP_001 EPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEP-AP
280 290 300 310 320 330
40 50 60 70 80 90
pF1KB8 TTKEPCHS--KVPQPGNTKIPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKV
::::: . : : : : : : : : : : : : :: : : : : : ::
NP_001 TTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTK-
340 350 360 370 380 390
100 110 120 130 140 150
pF1KB8 PEPGCTKVPEPGYTKVPEPGSIKVPDQGFIKFPEPGAIKVPEQGYTKVPVPGYTKVP---
: :: : : :: : . : :. : : : . : : : :.: : :
NP_001 SAPTTTKEPAPTTTK-SAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPT
400 410 420 430 440 450
160
pF1KB8 ---EPCPSTVT-PGPAQQKTKQK
:: :.:. :.:. :
NP_001 TPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTPTTPEKLAPTTPEKPAPTTPEE
460 470 480 490 500 510
>>XP_016855491 (OMIM: 208250,604283) PREDICTED: proteogl (1311 aa)
initn: 203 init1: 109 opt: 282 Z-score: 176.4 bits: 42.0 E(85289): 0.0044
Smith-Waterman score: 282; 36.1% identity (45.6% similar) in 169 aa overlap (6-165:348-513)
10 20 30
pF1KB8 MSSYQQKQTFTPPPQLQQQQVKQPSQPPPQEIFVP
.: . : : . :.:. :.: .:
XP_016 EPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEP-AP
320 330 340 350 360 370
40 50 60 70 80 90
pF1KB8 TTKEPCHS--KVPQPGNTKIPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKV
::::: . : : : : : : : : : : : : :: : : : : : ::
XP_016 TTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTK-
380 390 400 410 420 430
100 110 120 130 140 150
pF1KB8 PEPGCTKVPEPGYTKVPEPGSIKVPDQGFIKFPEPGAIKVPEQGYTKVPVPGYTKVP---
: :: : : :: : . : :. : : : . : : : :.: : :
XP_016 SAPTTTKEPAPTTTK-SAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPT
440 450 460 470 480 490
160
pF1KB8 ---EPCPSTVT-PGPAQQKTKQK
:: :.:. :.:. :
XP_016 TPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTPTTPEKLAPTTPEKPAPTTPEE
500 510 520 530 540 550
>>NP_001121181 (OMIM: 208250,604283) proteoglycan 4 isof (1311 aa)
initn: 203 init1: 109 opt: 282 Z-score: 176.4 bits: 42.0 E(85289): 0.0044
Smith-Waterman score: 282; 36.1% identity (45.6% similar) in 169 aa overlap (6-165:348-513)
10 20 30
pF1KB8 MSSYQQKQTFTPPPQLQQQQVKQPSQPPPQEIFVP
.: . : : . :.:. :.: .:
NP_001 EPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEP-AP
320 330 340 350 360 370
40 50 60 70 80 90
pF1KB8 TTKEPCHS--KVPQPGNTKIPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKV
::::: . : : : : : : : : : : : : :: : : : : : ::
NP_001 TTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTK-
380 390 400 410 420 430
100 110 120 130 140 150
pF1KB8 PEPGCTKVPEPGYTKVPEPGSIKVPDQGFIKFPEPGAIKVPEQGYTKVPVPGYTKVP---
: :: : : :: : . : :. : : : . : : : :.: : :
NP_001 SAPTTTKEPAPTTTK-SAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPT
440 450 460 470 480 490
160
pF1KB8 ---EPCPSTVT-PGPAQQKTKQK
:: :.:. :.:. :
NP_001 TPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTPTTPEKLAPTTPEKPAPTTPEE
500 510 520 530 540 550
>>NP_001290161 (OMIM: 208250,604283) proteoglycan 4 isof (1361 aa)
initn: 284 init1: 109 opt: 282 Z-score: 176.1 bits: 42.0 E(85289): 0.0045
Smith-Waterman score: 282; 36.1% identity (45.6% similar) in 169 aa overlap (6-165:398-563)
10 20 30
pF1KB8 MSSYQQKQTFTPPPQLQQQQVKQPSQPPPQEIFVP
.: . : : . :.:. :.: .:
NP_001 EPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEP-AP
370 380 390 400 410 420
40 50 60 70 80 90
pF1KB8 TTKEPCHS--KVPQPGNTKIPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEPGCTKV
::::: . : : : : : : : : : : : : :: : : : : : ::
NP_001 TTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTK-
430 440 450 460 470 480
100 110 120 130 140 150
pF1KB8 PEPGCTKVPEPGYTKVPEPGSIKVPDQGFIKFPEPGAIKVPEQGYTKVPVPGYTKVP---
: :: : : :: : . : :. : : : . : : : :.: : :
NP_001 SAPTTTKEPAPTTTK-SAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPT
490 500 510 520 530 540
160
pF1KB8 ---EPCPSTVT-PGPAQQKTKQK
:: :.:. :.:. :
NP_001 TPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTPTTPEKLAPTTPEKPAPTTPEE
550 560 570 580 590 600
169 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 21:02:36 2016 done: Sat Nov 5 21:02:37 2016
Total Scan time: 5.580 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]