Restriction map for
pFN21AB9919
(Circular) (Six-base) MAPSORT of: pFN21AB9919.seq Check: 1195 from: 1 to: 5617
pFN21AB9919 5617 bp
With 182 enzymes: SgfI *
October 20, 2009 10:42 ..
AarI CACCTGCnnnn'nnnn_
Cuts at: 2530 2530
Size: 5617
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3427 278
Size: 53 83 186 936 1891 2468
Fragments arranged by size:
2468 1891 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2859 2871 2960 1937
Size: 922 12 89 4594
Fragments arranged by size:
4594 922 89 12
Acc65I G'GTAC_C
Cuts at: 2938 2938
Size: 5617
AclI AA'CG_TT
Cuts at: 1563 3744 4117 1563
Size: 2181 373 3063
Fragments arranged by size:
3063 2181 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2669 3680 5064 5332 1632
Size: 1037 1011 1384 268 1917
Fragments arranged by size:
1917 1384 1037 1011 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5420
AflIII A'CryG_T
Cuts at: 1203 4516 5493 1203
Size: 3313 977 1327
Fragments arranged by size:
3313 1327 977
AgeI A'CCGG_T
Cuts at: 4448 4448
Size: 5617
AhdI GACnn_n'nnGTC
Cuts at: 4346 4346
Size: 5617
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5617
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 2212 2380 1184
Size: 1028 168 4421
Fragments arranged by size:
4421 1028 168
AlwNI CAG_nnn'CTG
Cuts at: 2219 2579 3360 4932 2219
Size: 360 781 1572 2904
Fragments arranged by size:
2904 1572 781 360
ApaLI G'TGCA_C
Cuts at: 3674 4830 3674
Size: 1156 4461
ApoI r'AATT_y
Cuts at: 1493 2272 2299 2926 3152 3304 5413 1493
Size: 779 27 627 226 152 2109 1697
Fragments arranged by size:
2109 1697 779 627 226 152 27
AseI AT'TA_AT
Cuts at: 160 1032 4171 160
Size: 872 3139 1606
Fragments arranged by size:
3139 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5617
AvaI C'yCGr_G
Cuts at: 1870 1943 2942 1870
Size: 73 999 4545
Fragments arranged by size:
4545 999 73
BamHI G'GATC_C
Cuts at: 2947 3314 2947
Size: 367 5250
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2938 4393 618
Size: 325 217 627 1151 1455 1842
Fragments arranged by size:
1842 1455 1151 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2936 1391
Size: 1545 4072
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4646
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3808 3842 1903
Size: 34 1871 34 3678
Fragments arranged by size:
3678 1871 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3509 4719 3509
Size: 1210 4407
BclI T'GATC_A
Cuts at: 1548 2505 1548
Size: 957 4660
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 4228 136
Size: 107 122 71 631 605 2556 1525
Fragments arranged by size:
2556 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5612 5612
Size: 5617
BlpI GC'TnA_GC
Cuts at: 3034 3034
Size: 5617
Bme1580I G_kGCm'C
Cuts at: 1790 2213 3678 4834 1790
Size: 423 1465 1156 2573
Fragments arranged by size:
2573 1465 1156 423
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5617
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2402 3348 4306
Size: 416 53 83 399 24 985 946 958
Cuts at: 4306 442
Size: 1753
Fragments arranged by size:
1753 985 958 946 416 399 83 53
24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5617
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2159 2438 2556 2874 4277 1239
Size: 920 279 118 318 1403 2579
Fragments arranged by size:
2579 1403 920 318 279 118
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 2762 3742 4607 4905 2762
Size: 980 865 298 3474
Fragments arranged by size:
3474 980 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 4280 882
Size: 617 2781 2219
Fragments arranged by size:
2781 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 3408 493
Size: 711 2204 2702
Fragments arranged by size:
2702 2204 711
BsaBI GATnn'nnATC
Cuts at: 5611 5611
Size: 5617
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3424 3806 4441 275
Size: 53 83 186 936 1891 382 635 1451
Fragments arranged by size:
1891 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 2665 4050 4448 4722 4869 5280 2665
Size: 1385 398 274 147 411 3002
Fragments arranged by size:
3002 1385 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 2554 2584 1178
Size: 30 165 30 1151 30 4211
Fragments arranged by size:
4211 1151 165 30 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2282 2506 1186
Size: 1096 224 4297
Fragments arranged by size:
4297 1096 224
BseYI C'CCAG_C
Cuts at: 2206 2604 4820 5316 2206
Size: 398 2216 496 2507
Fragments arranged by size:
2507 2216 496 398
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2129 1163
Size: 573 393 4651
Fragments arranged by size:
4651 573 393
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 3067 3828 4856 1540
Size: 275 186 1066 761 1028 2301
Fragments arranged by size:
2301 1066 1028 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 2403 3678 3763 4834 2403
Size: 1275 85 1071 3186
Fragments arranged by size:
3186 1275 1071 85
BsmI GAATG_Cn'
Cuts at: 3128 3221 3128
Size: 93 5524
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2213 2403 2936 3678 3763 4834 1391
Size: 399 423 190 533 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 533 423 399 190 85
BspEI T'CCGG_A
Cuts at: 5280 5280
Size: 5617
BspHI T'CATG_A
Cuts at: 3506 5236 3506
Size: 1730 3887
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2530 2972 844
Size: 1686 442 3489
Fragments arranged by size:
3489 1686 442
BsrBI CCG'CTC
Cuts at: 1394 1823 2107 2177 3504 1394
Size: 429 284 70 1327 3507
Fragments arranged by size:
3507 1327 429 284 70
BsrDI GCAATG_nn'
Cuts at: 65 1248 4112 4286 65
Size: 1183 2864 174 1396
Fragments arranged by size:
2864 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 4261 4448 1700
Size: 110 2451 187 2869
Fragments arranged by size:
2869 2451 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5617
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5617
BssSI C'ACGA_G
Cuts at: 3677 4689 3677
Size: 1012 4605
BstAPI GCAn_nnn'nTGC
Cuts at: 794 2589 794
Size: 1795 3822
BstBI TT'CG_AA
Cuts at: 4421 4421
Size: 5617
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5617
BstYI r'GATC_y
Cuts at: 1972 2947 3314 3699 3716 5168 5254 5266 5612
Size: 975 367 385 17 1452 86 12 346
Cuts at: 5612 1972
Size: 1977
Fragments arranged by size:
1977 1452 975 385 367 346 86 17
12
BtgI C'CryG_G
Cuts at: 513 1065 2827 513
Size: 552 1762 3303
Fragments arranged by size:
3303 1762 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 2887 487
Size: 683 56 1661 3217
Fragments arranged by size:
3217 1661 683 56
BtsI GCAGTG_nn'
Cuts at: 2362 3133 3927 3947 2362
Size: 771 794 20 4032
Fragments arranged by size:
4032 794 771 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5617
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5582
DraI TTT'AAA
Cuts at: 2921 2921
Size: 5617
DraIII CAC_nnn'GTG
Cuts at: 2589 2589
Size: 5617
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4624 809
Size: 507 3308 1802
Fragments arranged by size:
3308 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2039 2445 3064
Size: 54 1425 50 275 18 209 406 619
Cuts at: 3064 3953 5582 8
Size: 889 1629 43
Fragments arranged by size:
1629 1425 889 619 406 275 209 54
50 43 18
EagI C'GGCC_G
Cuts at: 1537 1812 3064 1537
Size: 275 1252 4090
Fragments arranged by size:
4090 1252 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3547 1353
Size: 2194 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 2447 4204 4578 4724 387
Size: 1064 138 858 1757 374 146 1280
Fragments arranged by size:
1757 1280 1064 858 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2159 2438 2556 2669 2874 3680 4277
Size: 393 527 279 118 113 205 806 597
Cuts at: 4277 5064 5332 1239
Size: 787 268 1524
Fragments arranged by size:
1524 806 787 597 527 393 279 268
205 118 113
EcoRI G'AATT_C
Cuts at: 2272 2299 2926 3304 2272
Size: 27 627 378 4585
Fragments arranged by size:
4585 627 378 27
FspI TGC'GCA
Cuts at: 4123 4123
Size: 5617
HaeII r_GCGC'y
Cuts at: 1678 2207 4764 1678
Size: 529 2557 2531
Fragments arranged by size:
2557 2531 529
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 4258 4290 4332 4364 1373
Size: 32 135 32 2686 32 42 32 2626
Fragments arranged by size:
2686 2626 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2961 3207 669
Size: 988 281 1023 246 3079
Fragments arranged by size:
3079 1023 988 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5617
HpaI GTT'AAC
Cuts at: 3207 3207
Size: 5617
KpnI G_GTAC'C
Cuts at: 2942 2942
Size: 5617
MfeI C'AATT_G
Cuts at: 3216 3216
Size: 5617
MluI A'CGCG_T
Cuts at: 5493 5493
Size: 5617
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4731 4915 1305
Size: 3426 184 2007
Fragments arranged by size:
3426 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3795
Fragments arranged by size:
3795 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2384 2832 3575 3934 4093 518
Size: 648 1218 448 743 359 159 2042
Fragments arranged by size:
2042 1218 743 648 448 359 159
MspA1I CmG'CkG
Cuts at: 1606 2122 2576 3033 3710 4858 5103 1606
Size: 516 454 457 677 1148 245 2120
Fragments arranged by size:
2120 1148 677 516 457 454 245
NcoI C'CATG_G
Cuts at: 513 1065 2827 513
Size: 552 1762 3303
Fragments arranged by size:
3303 1762 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5617
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5617
NotI GC'GGCC_GC
Cuts at: 3064 3064
Size: 5617
NspI r_CATG'y
Cuts at: 1132 1229 2725 2975 4520 1132
Size: 97 1496 250 1545 2229
Fragments arranged by size:
2229 1545 1496 250 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5617
PciI A'CATG_T
Cuts at: 4516 4516
Size: 5617
PflMI CCAn_nnn'nTGG
Cuts at: 1108 2579 1108
Size: 1471 4146
PfoI T'CCnGG_A
Cuts at: 2415 2415
Size: 5617
PmeI GTTT'AAAC
Cuts at: 2921 2921
Size: 5617
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3686 3718 5199 5231 3686
Size: 32 1481 32 4072
Fragments arranged by size:
4072 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5617
PsiI TTA'TAA
Cuts at: 3187 3187
Size: 5617
PstI C_TGCA'G
Cuts at: 830 2969 830
Size: 2139 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5617
PvuII CAG'CTG
Cuts at: 2576 2576
Size: 5617
SalI G'TCGA_C
Cuts at: 1936 2959 1936
Size: 1023 4594
SbfI CC_TGCA'GG
Cuts at: 2969 2969
Size: 5617
ScaI AGT'ACT
Cuts at: 3865 5577 3865
Size: 1712 3905
SexAI A'CCwGG_T
Cuts at: 2286 2286
Size: 5617
SfcI C'TryA_G
Cuts at: 826 1045 2965 4100 4781 4972 826
Size: 219 1920 1135 681 191 1471
Fragments arranged by size:
1920 1471 1135 681 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5617
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5617
SmaI CCC'GGG
Cuts at: 1872 2944 1872
Size: 1072 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 2741 3721 4622 4884 820
Size: 197 926 798 980 901 262 1553
Fragments arranged by size:
1553 980 926 901 798 262 197
SnaBI TAC'GTA
Cuts at: 493 3408 493
Size: 2915 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5617
SphI G_CATG'C
Cuts at: 1132 2975 1132
Size: 1843 3774
SspI AAT'ATT
Cuts at: 5 52 3541 5
Size: 47 3489 2081
Fragments arranged by size:
3489 2081 47
StuI AGG'CCT
Cuts at: 1517 2092 2851 1517
Size: 575 759 4283
Fragments arranged by size:
4283 759 575
StyI C'CwwG_G
Cuts at: 513 1065 2806 2827 2865 3056 513
Size: 552 1741 21 38 191 3074
Fragments arranged by size:
3074 1741 552 191 38 21
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2147 2335 3644 3661 3814 3999 4444
Size: 1255 567 188 1309 17 153 185 445
Cuts at: 4444 325
Size: 1498
Fragments arranged by size:
1498 1309 1255 567 445 188 185 153
17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3863 5575 96
Size: 274 80 33 51 1443 1886 1712 138
Fragments arranged by size:
1886 1712 1443 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 2554 2586 5577 5609 2554
Size: 32 2991 32 2562
Fragments arranged by size:
2991 2562 32 32
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5617
XbaI T'CTAG_A
Cuts at: 2953 2953
Size: 5617
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 2318 2771 2318
Size: 453 5164
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5617
XmaI C'CCGG_G
Cuts at: 1870 2942 1870
Size: 1072 4545
XmnI GAAnn'nnTTC
Cuts at: 3746 3746
Size: 5617
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3425 276
Size: 53 83 186 936 1891 2468
Fragments arranged by size:
2468 1891 936 186 83 53
Enzymes that do cut:
AarI AatII AccI Acc65I AclI AcuI AflII AflIII
AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI
AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI
BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI
BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI
BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI
BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI
BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI
CspCI DraI DraIII DrdI EaeI EagI EarI EciI
Eco57MI EcoRI FspI HaeII Hin4I HincII HindIII HpaI
KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI
NdeI NheI NotI NspI PasI PciI PflMI PfoI
PmeI PpiI PshAI PsiI PstI PvuI PvuII SalI
SbfI ScaI SexAI SfcI SgfI SgrAI SmaI SmlI
SnaBI SpeI SphI SspI StuI StyI TaqII TatI
TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI
BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I
EcoICRI EcoNI EcoO109I EcoRV FalI FseI FspAI KasI
NaeI NarI NgoMIV NruI NsiI PacI PmlI PpuMI
PspOMI PspXI PsrI RsrII SacI SacII SanDI SapI
SfiI SfoI SrfI SwaI