(Circular) (Six-base) MAPSORT of: pFN21AB6979.seq Check: 7055 from: 1 to: 5359 pFN21AB6979 5359 bp With 182 enzymes: SgfI * October 20, 2009 10:42 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3169 278 Size: 53 83 186 936 1633 2468 Fragments arranged by size: 2468 1633 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2702 1937 Size: 765 4594 Acc65I G'GTAC_C Cuts at: 2680 2680 Size: 5359 AclI AA'CG_TT Cuts at: 1563 3486 3859 1563 Size: 1923 373 3063 Fragments arranged by size: 3063 1923 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2069 2599 3422 4806 5074 1632 Size: 437 530 823 1384 268 1917 Fragments arranged by size: 1917 1384 823 530 437 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5162 AflIII A'CryG_T Cuts at: 1203 2298 2653 4258 5235 1203 Size: 1095 355 1605 977 1327 Fragments arranged by size: 1605 1327 1095 977 355 AgeI A'CCGG_T Cuts at: 4190 4190 Size: 5359 AhdI GACnn_n'nnGTC Cuts at: 4088 4088 Size: 5359 AleI CACnn'nnGTG Cuts at: 1166 2387 2596 1166 Size: 1221 209 3929 Fragments arranged by size: 3929 1221 209 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 2381 2405 1184 Size: 1197 24 4138 Fragments arranged by size: 4138 1197 24 AlwNI CAG_nnn'CTG Cuts at: 3102 4674 3102 Size: 1572 3787 ApaI G_GGCC'C Cuts at: 2043 2077 2043 Size: 34 5325 ApaLI G'TGCA_C Cuts at: 2380 3416 4572 2380 Size: 1036 1156 3167 Fragments arranged by size: 3167 1156 1036 ApoI r'AATT_y Cuts at: 1493 2668 2894 3046 5155 1493 Size: 1175 226 152 2109 1697 Fragments arranged by size: 2109 1697 1175 226 152 AseI AT'TA_AT Cuts at: 160 1032 3913 160 Size: 872 2881 1606 Fragments arranged by size: 2881 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5359 AvaI C'yCGr_G Cuts at: 1870 1943 2132 2268 2684 1870 Size: 73 189 136 416 4545 Fragments arranged by size: 4545 416 189 136 73 BamHI G'GATC_C Cuts at: 2457 2689 3056 2457 Size: 232 367 4760 Fragments arranged by size: 4760 367 232 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2128 2152 2389 2598 2680 Size: 325 217 627 341 24 237 209 82 Cuts at: 2680 4135 618 Size: 1455 1842 Fragments arranged by size: 1842 1455 627 341 325 237 217 209 82 24 BanII G_rGCy'C Cuts at: 1391 2043 2077 2678 1391 Size: 652 34 601 4072 Fragments arranged by size: 4072 652 601 34 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2072 928 Size: 971 173 4215 Fragments arranged by size: 4215 971 173 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3550 3584 1903 Size: 34 1613 34 3678 Fragments arranged by size: 3678 1613 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3251 4461 3251 Size: 1210 4149 BclI T'GATC_A Cuts at: 1548 2400 1548 Size: 852 4507 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 3970 136 Size: 107 122 71 631 605 2298 1525 Fragments arranged by size: 2298 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5354 5354 Size: 5359 BlpI GC'TnA_GC Cuts at: 2180 2776 2180 Size: 596 4763 Bme1580I G_kGCm'C Cuts at: 1790 2043 2077 2384 2603 3420 4576 1790 Size: 253 34 307 219 817 1156 2573 Fragments arranged by size: 2573 1156 817 307 253 219 34 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5359 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2332 3090 4048 Size: 416 53 83 399 24 915 758 958 Cuts at: 4048 442 Size: 1753 Fragments arranged by size: 1753 958 915 758 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5359 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2602 4019 1239 Size: 1363 1417 2579 Fragments arranged by size: 2579 1417 1363 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2177 2354 2474 3484 4349 4647 2177 Size: 177 120 1010 865 298 2889 Fragments arranged by size: 2889 1010 865 298 177 120 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4022 882 Size: 617 2523 2219 Fragments arranged by size: 2523 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 2654 3150 493 Size: 711 1450 496 2702 Fragments arranged by size: 2702 1450 711 496 BsaBI GATnn'nnATC Cuts at: 5353 5353 Size: 5359 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3166 3548 4183 275 Size: 53 83 186 936 1633 382 635 1451 Fragments arranged by size: 1633 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3792 4190 4464 4611 5022 3792 Size: 398 274 147 411 4129 Fragments arranged by size: 4129 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2246 2276 2432 2462 1178 Size: 30 165 30 843 30 156 30 4075 Fragments arranged by size: 4075 843 165 156 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2477 2487 2550 1186 Size: 1291 10 63 3995 Fragments arranged by size: 3995 1291 63 10 BseYI C'CCAG_C Cuts at: 4562 5058 4562 Size: 496 4863 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4786 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2809 3570 4598 1540 Size: 275 186 808 761 1028 2301 Fragments arranged by size: 2301 1028 808 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2370 2384 3420 3505 4576 2370 Size: 14 1036 85 1071 3153 Fragments arranged by size: 3153 1071 1036 85 14 BsmI GAATG_Cn' Cuts at: 2870 2963 2870 Size: 93 5266 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2043 2077 2370 2384 2603 2678 3420 Size: 399 253 34 293 14 219 75 742 Cuts at: 3420 3505 4576 1391 Size: 85 1071 2174 Fragments arranged by size: 2174 1071 742 399 293 253 219 85 75 34 14 BspEI T'CCGG_A Cuts at: 5022 5022 Size: 5359 BspHI T'CATG_A Cuts at: 2061 3248 4978 2061 Size: 1187 1730 2442 Fragments arranged by size: 2442 1730 1187 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2577 2714 844 Size: 1733 137 3489 Fragments arranged by size: 3489 1733 137 BsrBI CCG'CTC Cuts at: 1394 1823 2443 3246 1394 Size: 429 620 803 3507 Fragments arranged by size: 3507 803 620 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3854 4028 65 Size: 1183 2606 174 1396 Fragments arranged by size: 2606 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4003 4190 1700 Size: 110 2193 187 2869 Fragments arranged by size: 2869 2193 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5359 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5359 BssSI C'ACGA_G Cuts at: 3419 4431 3419 Size: 1012 4347 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5359 BstBI TT'CG_AA Cuts at: 4163 4163 Size: 5359 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5359 BstXI CCAn_nnnn'nTGG Cuts at: 2362 2563 2362 Size: 201 5158 BstYI r'GATC_y Cuts at: 1972 2457 2689 3056 3441 3458 4910 4996 5008 Size: 485 232 367 385 17 1452 86 12 Cuts at: 5008 5354 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 485 385 367 346 232 86 17 12 Bsu36I CC'TnA_GG Cuts at: 2157 2157 Size: 5359 BtgI C'CryG_G Cuts at: 513 1065 2004 2250 513 Size: 552 939 246 3622 Fragments arranged by size: 3622 939 552 246 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4620 Fragments arranged by size: 4620 683 56 BtsI GCAGTG_nn' Cuts at: 2875 3669 3689 2875 Size: 794 20 4545 Fragments arranged by size: 4545 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5359 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5324 DraI TTT'AAA Cuts at: 2663 2663 Size: 5359 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4366 809 Size: 507 3050 1802 Fragments arranged by size: 3050 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2806 3695 5324 Size: 54 1425 50 275 18 976 889 1629 Cuts at: 5324 8 Size: 43 Fragments arranged by size: 1629 1425 976 889 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2806 1537 Size: 275 994 4090 Fragments arranged by size: 4090 994 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3289 1353 Size: 1936 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3946 4320 4466 387 Size: 1064 138 2357 374 146 1280 Fragments arranged by size: 2357 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2069 2599 2602 3422 4019 4806 5074 Size: 393 437 530 3 820 597 787 268 Cuts at: 5074 1239 Size: 1524 Fragments arranged by size: 1524 820 787 597 530 437 393 268 3 EcoO109I rG'GnC_Cy Cuts at: 2039 2073 2074 2374 2567 2039 Size: 34 1 300 193 4831 Fragments arranged by size: 4831 300 193 34 1 EcoRI G'AATT_C Cuts at: 2668 3046 2668 Size: 378 4981 FspI TGC'GCA Cuts at: 3865 3865 Size: 5359 HaeII r_GCGC'y Cuts at: 1678 4506 1678 Size: 2828 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2173 2205 2246 2278 4000 Size: 32 135 32 601 32 41 32 1722 Cuts at: 4000 4032 4074 4106 1373 Size: 32 42 32 2626 Fragments arranged by size: 2626 1722 601 135 42 41 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2703 2949 669 Size: 988 281 765 246 3079 Fragments arranged by size: 3079 988 765 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5359 HpaI GTT'AAC Cuts at: 2949 2949 Size: 5359 KpnI G_GTAC'C Cuts at: 2684 2684 Size: 5359 MfeI C'AATT_G Cuts at: 2958 2958 Size: 5359 MluI A'CGCG_T Cuts at: 5235 5235 Size: 5359 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4473 4657 1305 Size: 3168 184 2007 Fragments arranged by size: 3168 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3537 Fragments arranged by size: 3537 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2387 2596 3317 3676 3835 518 Size: 648 1221 209 721 359 159 2042 Fragments arranged by size: 2042 1221 721 648 359 209 159 MspA1I CmG'CkG Cuts at: 1606 2294 2775 3452 4600 4845 1606 Size: 688 481 677 1148 245 2120 Fragments arranged by size: 2120 1148 688 677 481 245 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 3868 Fragments arranged by size: 3868 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5359 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5359 NotI GC'GGCC_GC Cuts at: 2806 2806 Size: 5359 NspI r_CATG'y Cuts at: 1132 1229 2302 2717 4262 1132 Size: 97 1073 415 1545 2229 Fragments arranged by size: 2229 1545 1073 415 97 PasI CC'CwG_GG Cuts at: 1348 2571 1348 Size: 1223 4136 PciI A'CATG_T Cuts at: 2298 4258 2298 Size: 1960 3399 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5359 PfoI T'CCnGG_A Cuts at: 2097 2436 2097 Size: 339 5020 PmeI GTTT'AAAC Cuts at: 2663 2663 Size: 5359 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3428 3460 4941 4973 3428 Size: 32 1481 32 3814 Fragments arranged by size: 3814 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2567 2567 Size: 5359 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5359 PsiI TTA'TAA Cuts at: 2929 2929 Size: 5359 PspOMI G'GGCC_C Cuts at: 2039 2073 2039 Size: 34 5325 PstI C_TGCA'G Cuts at: 830 2235 2711 830 Size: 1405 476 3478 Fragments arranged by size: 3478 1405 476 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5359 PvuII CAG'CTG Cuts at: 2294 2294 Size: 5359 SalI G'TCGA_C Cuts at: 1936 2701 1936 Size: 765 4594 SanDI GG'GwC_CC Cuts at: 2567 2567 Size: 5359 SbfI CC_TGCA'GG Cuts at: 2711 2711 Size: 5359 ScaI AGT'ACT Cuts at: 3607 5319 3607 Size: 1712 3647 SfcI C'TryA_G Cuts at: 826 1045 2231 2707 3842 4523 4714 826 Size: 219 1186 476 1135 681 191 1471 Fragments arranged by size: 1471 1186 1135 681 476 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5359 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5359 SmaI CCC'GGG Cuts at: 1872 2686 1872 Size: 814 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2192 2369 2489 3463 4364 4626 Size: 197 926 249 177 120 974 901 262 Cuts at: 4626 820 Size: 1553 Fragments arranged by size: 1553 974 926 901 262 249 197 177 120 SnaBI TAC'GTA Cuts at: 493 3150 493 Size: 2657 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5359 SphI G_CATG'C Cuts at: 1132 2717 1132 Size: 1585 3774 SspI AAT'ATT Cuts at: 5 52 3283 5 Size: 47 3231 2081 Fragments arranged by size: 3231 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5359 StyI C'CwwG_G Cuts at: 513 1065 2004 2385 2798 513 Size: 552 939 381 413 3074 Fragments arranged by size: 3074 939 552 413 381 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2467 3386 3403 3556 3741 4186 325 Size: 1255 887 919 17 153 185 445 1498 Fragments arranged by size: 1498 1255 919 887 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3605 5317 96 Size: 274 80 33 51 1443 1628 1712 138 Fragments arranged by size: 1712 1628 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5319 5351 5319 Size: 32 5327 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5359 XbaI T'CTAG_A Cuts at: 2695 2695 Size: 5359 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2468 2468 Size: 5359 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5359 XmaI C'CCGG_G Cuts at: 1870 2684 1870 Size: 814 4545 XmnI GAAnn'nnTTC Cuts at: 3488 3488 Size: 5359 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3167 276 Size: 53 83 186 936 1633 2468 Fragments arranged by size: 2468 1633 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PfoI PmeI PpiI PpuMI PshAI PsiI PspOMI PstI PvuI PvuII SalI SanDI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstZ17I DraIII EcoICRI EcoNI EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PmlI PspXI PsrI RsrII SacI SacII SapI SexAI SfiI SfoI SrfI SwaI