Result of FASTA (omim) for
pFN21AB6701
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6701, 62 aa
1>>>pF1KB6701 62 - 62 aa - 62 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2351+/-0.000322; mu= 3.3089+/- 0.020
mean_var=145.3029+/-27.719, 0's: 0 Z-trim(121.9): 29 B-trim: 54 in 1/51
Lambda= 0.106399
statistics sampled from 39057 (39093) to 39057 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.776), E-opt: 0.2 (0.458), width: 16
Scan time: 3.390
The best scores are: opt bits E(85289)
NP_001288196 (OMIM: 156353) metallothionein-1G iso ( 62) 511 87.8 1.2e-18
NP_005941 (OMIM: 156353) metallothionein-1G isofor ( 61) 494 85.2 7.1e-18
NP_005940 (OMIM: 156352) metallothionein-1F isofor ( 61) 479 82.9 3.5e-17
NP_783316 (OMIM: 156351) metallothionein-1E [Homo ( 61) 478 82.8 3.9e-17
NP_005944 (OMIM: 156360) metallothionein-2 [Homo s ( 61) 476 82.5 4.8e-17
NP_005942 (OMIM: 156354) metallothionein-1H [Homo ( 61) 464 80.6 1.7e-16
NP_005937 (OMIM: 156350) metallothionein-1A [Homo ( 61) 462 80.3 2.1e-16
NP_005943 (OMIM: 156359) metallothionein-1X [Homo ( 61) 460 80.0 2.6e-16
NP_005938 (OMIM: 156349) metallothionein-1B [Homo ( 61) 452 78.8 6.2e-16
NP_789846 (OMIM: 156357) metallothionein-1M [Homo ( 61) 443 77.4 1.6e-15
NP_116324 (OMIM: 606206) metallothionein-4 [Homo s ( 62) 366 65.6 5.9e-12
NP_005945 (OMIM: 139255) metallothionein-3 [Homo s ( 68) 362 65.0 9.6e-12
NP_001288201 (OMIM: 156352) metallothionein-1F iso ( 44) 249 47.5 1.2e-06
XP_005256013 (OMIM: 156351) PREDICTED: metallothio ( 127) 236 46.0 9.7e-06
>>NP_001288196 (OMIM: 156353) metallothionein-1G isoform (62 aa)
initn: 511 init1: 511 opt: 511 Z-score: 455.9 bits: 87.8 E(85289): 1.2e-18
Smith-Waterman score: 511; 100.0% identity (100.0% similar) in 62 aa overlap (1-62:1-62)
10 20 30 40 50 60
pF1KB6 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
10 20 30 40 50 60
pF1KB6 CA
::
NP_001 CA
>>NP_005941 (OMIM: 156353) metallothionein-1G isoform 1 (61 aa)
initn: 443 init1: 443 opt: 494 Z-score: 441.9 bits: 85.2 E(85289): 7.1e-18
Smith-Waterman score: 494; 98.4% identity (98.4% similar) in 62 aa overlap (1-62:1-61)
10 20 30 40 50 60
pF1KB6 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MDPNCSCAA-GVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
10 20 30 40 50
pF1KB6 CA
::
NP_005 CA
60
>>NP_005940 (OMIM: 156352) metallothionein-1F isoform 1 (61 aa)
initn: 428 init1: 428 opt: 479 Z-score: 429.4 bits: 82.9 E(85289): 3.5e-17
Smith-Waterman score: 479; 93.4% identity (98.4% similar) in 61 aa overlap (1-61:1-60)
10 20 30 40 50 60
pF1KB6 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
::::::::: :::::::.::::::::::::::::::::::::.::::::.::::::::::
NP_005 MDPNCSCAA-GVSCTCAGSCKCKECKCTSCKKSCCSCCPVGCSKCAQGCVCKGASEKCSC
10 20 30 40 50
pF1KB6 CA
:
NP_005 CD
60
>>NP_783316 (OMIM: 156351) metallothionein-1E [Homo sapi (61 aa)
initn: 423 init1: 423 opt: 478 Z-score: 428.6 bits: 82.8 E(85289): 3.9e-17
Smith-Waterman score: 478; 91.9% identity (98.4% similar) in 62 aa overlap (1-62:1-61)
10 20 30 40 50 60
pF1KB6 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
::::::::..: :::::.:::::::::::::::::::::::::::::::.::::::::::
NP_783 MDPNCSCATGG-SCTCAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCVCKGASEKCSC
10 20 30 40 50
pF1KB6 CA
::
NP_783 CA
60
>>NP_005944 (OMIM: 156360) metallothionein-2 [Homo sapie (61 aa)
initn: 425 init1: 425 opt: 476 Z-score: 427.0 bits: 82.5 E(85289): 4.8e-17
Smith-Waterman score: 476; 93.5% identity (96.8% similar) in 62 aa overlap (1-62:1-61)
10 20 30 40 50 60
pF1KB6 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
::::::::: : :::::.:::::::::::::::::::::::::::::::::::::.::::
NP_005 MDPNCSCAA-GDSCTCAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASDKCSC
10 20 30 40 50
pF1KB6 CA
::
NP_005 CA
60
>>NP_005942 (OMIM: 156354) metallothionein-1H [Homo sapi (61 aa)
initn: 410 init1: 410 opt: 464 Z-score: 417.0 bits: 80.6 E(85289): 1.7e-16
Smith-Waterman score: 464; 88.7% identity (96.8% similar) in 62 aa overlap (1-62:1-61)
10 20 30 40 50 60
pF1KB6 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
::::::: :.: ::.::.:::::.:::::::::::::::.::::::::::::::::::::
NP_005 MDPNCSCEAGG-SCACAGSCKCKKCKCTSCKKSCCSCCPLGCAKCAQGCICKGASEKCSC
10 20 30 40 50
pF1KB6 CA
::
NP_005 CA
60
>>NP_005937 (OMIM: 156350) metallothionein-1A [Homo sapi (61 aa)
initn: 407 init1: 407 opt: 462 Z-score: 415.3 bits: 80.3 E(85289): 2.1e-16
Smith-Waterman score: 462; 88.7% identity (98.4% similar) in 62 aa overlap (1-62:1-61)
10 20 30 40 50 60
pF1KB6 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
::::::::..: ::::..:::::::::::::::::::::..:::::::::::::::::::
NP_005 MDPNCSCATGG-SCTCTGSCKCKECKCTSCKKSCCSCCPMSCAKCAQGCICKGASEKCSC
10 20 30 40 50
pF1KB6 CA
::
NP_005 CA
60
>>NP_005943 (OMIM: 156359) metallothionein-1X [Homo sapi (61 aa)
initn: 401 init1: 401 opt: 460 Z-score: 413.7 bits: 80.0 E(85289): 2.6e-16
Smith-Waterman score: 460; 87.1% identity (96.8% similar) in 62 aa overlap (1-62:1-61)
10 20 30 40 50 60
pF1KB6 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
:::::::. .: ::.::.:::::::::::::::::::::::::::::::::::.:.::::
NP_005 MDPNCSCSPVG-SCACAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGTSDKCSC
10 20 30 40 50
pF1KB6 CA
::
NP_005 CA
60
>>NP_005938 (OMIM: 156349) metallothionein-1B [Homo sapi (61 aa)
initn: 397 init1: 397 opt: 452 Z-score: 407.0 bits: 78.8 E(85289): 6.2e-16
Smith-Waterman score: 452; 83.9% identity (95.2% similar) in 62 aa overlap (1-62:1-61)
10 20 30 40 50 60
pF1KB6 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
:::::::...: ::.::.:::::::::::::: ::::::::::::::::.:::.:::: :
NP_005 MDPNCSCTTGG-SCACAGSCKCKECKCTSCKKCCCSCCPVGCAKCAQGCVCKGSSEKCRC
10 20 30 40 50
pF1KB6 CA
::
NP_005 CA
60
>>NP_789846 (OMIM: 156357) metallothionein-1M [Homo sapi (61 aa)
initn: 441 init1: 392 opt: 443 Z-score: 399.6 bits: 77.4 E(85289): 1.6e-15
Smith-Waterman score: 443; 82.3% identity (96.8% similar) in 62 aa overlap (1-62:1-61)
10 20 30 40 50 60
pF1KB6 MDPNCSCAAAGVSCTCASSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCICKGASEKCSC
:::::::.. ::::.:..::::::::::::::::::::::::::::.::.:::. :.:::
NP_789 MDPNCSCTT-GVSCACTGSCKCKECKCTSCKKSCCSCCPVGCAKCAHGCVCKGTLENCSC
10 20 30 40 50
pF1KB6 CA
::
NP_789 CA
60
62 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 15:41:29 2016 done: Fri Nov 4 15:41:29 2016
Total Scan time: 3.390 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]