(Circular) (Six-base) MAPSORT of: pFN21AB6403.seq Check: 2043 from: 1 to: 5617 pFN21AB6403 5617 bp With 182 enzymes: SgfI * October 20, 2009 10:40 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3427 278 Size: 53 83 186 936 1891 2468 Fragments arranged by size: 2468 1891 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2960 1937 Size: 1023 4594 Acc65I G'GTAC_C Cuts at: 2938 2938 Size: 5617 AclI AA'CG_TT Cuts at: 1563 3744 4117 1563 Size: 2181 373 3063 Fragments arranged by size: 3063 2181 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2262 2925 3680 5064 5332 1632 Size: 630 663 755 1384 268 1917 Fragments arranged by size: 1917 1384 755 663 630 268 AfeI AGC'GCT Cuts at: 2902 2902 Size: 5617 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5420 AflIII A'CryG_T Cuts at: 1203 4516 5493 1203 Size: 3313 977 1327 Fragments arranged by size: 3313 1327 977 AgeI A'CCGG_T Cuts at: 4448 4448 Size: 5617 AhdI GACnn_n'nnGTC Cuts at: 4346 4346 Size: 5617 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5617 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 2131 1184 Size: 947 4670 AlwNI CAG_nnn'CTG Cuts at: 2240 2630 3360 4932 2240 Size: 390 730 1572 2925 Fragments arranged by size: 2925 1572 730 390 ApaLI G'TGCA_C Cuts at: 3674 4830 3674 Size: 1156 4461 ApoI r'AATT_y Cuts at: 1493 2507 2926 3152 3304 5413 1493 Size: 1014 419 226 152 2109 1697 Fragments arranged by size: 2109 1697 1014 419 226 152 AseI AT'TA_AT Cuts at: 160 1032 4171 160 Size: 872 3139 1606 Fragments arranged by size: 3139 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5617 AvaI C'yCGr_G Cuts at: 1870 1943 2942 1870 Size: 73 999 4545 Fragments arranged by size: 4545 999 73 BamHI G'GATC_C Cuts at: 2347 2947 3314 2347 Size: 600 367 4650 Fragments arranged by size: 4650 600 367 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2938 4393 618 Size: 325 217 627 1151 1455 1842 Fragments arranged by size: 1842 1455 1151 627 325 217 BanII G_rGCy'C Cuts at: 1391 2936 1391 Size: 1545 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4646 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3808 3842 1903 Size: 34 1871 34 3678 Fragments arranged by size: 3678 1871 34 34 BciVI GTATCCnnnnn_n' Cuts at: 2623 3509 4719 2623 Size: 886 1210 3521 Fragments arranged by size: 3521 1210 886 BclI T'GATC_A Cuts at: 1548 1548 Size: 5617 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4228 136 Size: 107 122 71 631 605 2556 1525 Fragments arranged by size: 2556 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 2545 5612 2545 Size: 3067 2550 BlpI GC'TnA_GC Cuts at: 2823 3034 2823 Size: 211 5406 Bme1580I G_kGCm'C Cuts at: 1790 3678 4834 1790 Size: 1888 1156 2573 Fragments arranged by size: 2573 1888 1156 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5617 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3348 4306 442 Size: 416 53 83 399 24 1931 958 1753 Fragments arranged by size: 1931 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 2655 1056 Size: 1599 4018 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2787 4277 1239 Size: 1548 1490 2579 Fragments arranged by size: 2579 1548 1490 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2694 3742 4607 4905 2694 Size: 1048 865 298 3406 Fragments arranged by size: 3406 1048 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4280 882 Size: 617 2781 2219 Fragments arranged by size: 2781 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3408 493 Size: 711 2204 2702 Fragments arranged by size: 2702 2204 711 BsaBI GATnn'nnATC Cuts at: 5611 5611 Size: 5617 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3424 3806 4441 275 Size: 53 83 186 936 1891 382 635 1451 Fragments arranged by size: 1891 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2877 4050 4448 4722 4869 5280 2877 Size: 1173 398 274 147 411 3214 Fragments arranged by size: 3214 1173 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5392 Fragments arranged by size: 5392 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5617 BseYI C'CCAG_C Cuts at: 4820 5316 4820 Size: 496 5121 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 5044 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3067 3828 4856 1540 Size: 275 186 1066 761 1028 2301 Fragments arranged by size: 2301 1066 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 3678 3763 4834 3678 Size: 85 1071 4461 Fragments arranged by size: 4461 1071 85 BsmI GAATG_Cn' Cuts at: 2911 3128 3221 2911 Size: 217 93 5307 Fragments arranged by size: 5307 217 93 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2936 3678 3763 4834 1391 Size: 399 1146 742 85 1071 2174 Fragments arranged by size: 2174 1146 1071 742 399 85 BspEI T'CCGG_A Cuts at: 2877 5280 2877 Size: 2403 3214 BspHI T'CATG_A Cuts at: 3506 5236 3506 Size: 1730 3887 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2767 2972 844 Size: 1923 205 3489 Fragments arranged by size: 3489 1923 205 BsrBI CCG'CTC Cuts at: 1394 1823 3504 1394 Size: 429 1681 3507 Fragments arranged by size: 3507 1681 429 BsrDI GCAATG_nn' Cuts at: 65 1248 4112 4286 65 Size: 1183 2864 174 1396 Fragments arranged by size: 2864 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4261 4448 1700 Size: 110 2451 187 2869 Fragments arranged by size: 2869 2451 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5617 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5617 BssSI C'ACGA_G Cuts at: 3677 4689 3677 Size: 1012 4605 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5617 BstBI TT'CG_AA Cuts at: 4421 4421 Size: 5617 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5617 BstYI r'GATC_y Cuts at: 1972 2347 2545 2947 3314 3699 3716 5168 5254 Size: 375 198 402 367 385 17 1452 86 Cuts at: 5254 5266 5612 1972 Size: 12 346 1977 Fragments arranged by size: 1977 1452 402 385 375 367 346 198 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 513 Size: 552 5065 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4878 Fragments arranged by size: 4878 683 56 BtsI GCAGTG_nn' Cuts at: 2322 2493 3133 3927 3947 2322 Size: 171 640 794 20 3992 Fragments arranged by size: 3992 794 640 171 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5617 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5582 DraI TTT'AAA Cuts at: 2921 2921 Size: 5617 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4624 809 Size: 507 3308 1802 Fragments arranged by size: 3308 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 3064 3953 5582 Size: 54 1425 50 275 18 1234 889 1629 Cuts at: 5582 8 Size: 43 Fragments arranged by size: 1629 1425 1234 889 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3064 1537 Size: 275 1252 4090 Fragments arranged by size: 4090 1252 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2901 3547 1353 Size: 1548 646 3423 Fragments arranged by size: 3423 1548 646 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4204 4578 4724 387 Size: 1064 138 2615 374 146 1280 Fragments arranged by size: 2615 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2262 2787 2925 3680 4277 5064 5332 Size: 393 630 525 138 755 597 787 268 Cuts at: 5332 1239 Size: 1524 Fragments arranged by size: 1524 787 755 630 597 525 393 268 138 EcoO109I rG'GnC_Cy Cuts at: 2756 2776 2756 Size: 20 5597 EcoRI G'AATT_C Cuts at: 2926 3304 2926 Size: 378 5239 FspI TGC'GCA Cuts at: 4123 4123 Size: 5617 HaeII r_GCGC'y Cuts at: 1678 2904 4764 1678 Size: 1226 1860 2531 Fragments arranged by size: 2531 1860 1226 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2650 2682 4258 4290 4332 Size: 32 135 32 1078 32 1576 32 42 Cuts at: 4332 4364 1373 Size: 32 2626 Fragments arranged by size: 2626 1576 1078 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2961 3207 669 Size: 988 281 1023 246 3079 Fragments arranged by size: 3079 1023 988 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5617 HpaI GTT'AAC Cuts at: 3207 3207 Size: 5617 KpnI G_GTAC'C Cuts at: 2942 2942 Size: 5617 MfeI C'AATT_G Cuts at: 2445 3216 2445 Size: 771 4846 MluI A'CGCG_T Cuts at: 5493 5493 Size: 5617 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4731 4915 1305 Size: 3426 184 2007 Fragments arranged by size: 3426 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3795 Fragments arranged by size: 3795 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2681 3575 3934 4093 518 Size: 648 1515 894 359 159 2042 Fragments arranged by size: 2042 1515 894 648 359 159 MspA1I CmG'CkG Cuts at: 1606 3033 3710 4858 5103 1606 Size: 1427 677 1148 245 2120 Fragments arranged by size: 2120 1427 1148 677 245 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 5065 NdeI CA'TA_TG Cuts at: 387 387 Size: 5617 NheI G'CTAG_C Cuts at: 1052 2651 1052 Size: 1599 4018 NotI GC'GGCC_GC Cuts at: 3064 3064 Size: 5617 NspI r_CATG'y Cuts at: 1132 1229 2975 4520 1132 Size: 97 1746 1545 2229 Fragments arranged by size: 2229 1746 1545 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5617 PciI A'CATG_T Cuts at: 4516 4516 Size: 5617 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5617 PmeI GTTT'AAAC Cuts at: 2921 2921 Size: 5617 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3686 3718 5199 5231 3686 Size: 32 1481 32 4072 Fragments arranged by size: 4072 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2756 2756 Size: 5617 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5617 PsiI TTA'TAA Cuts at: 3187 3187 Size: 5617 PstI C_TGCA'G Cuts at: 830 2317 2969 830 Size: 1487 652 3478 Fragments arranged by size: 3478 1487 652 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5617 SalI G'TCGA_C Cuts at: 1936 2959 1936 Size: 1023 4594 SapI GCTCTTCn'nnn_ Cuts at: 2901 2901 Size: 5617 SbfI CC_TGCA'GG Cuts at: 2969 2969 Size: 5617 ScaI AGT'ACT Cuts at: 3865 5577 3865 Size: 1712 3905 SexAI A'CCwGG_T Cuts at: 2022 2022 Size: 5617 SfcI C'TryA_G Cuts at: 826 1045 2313 2622 2965 4100 4781 4972 826 Size: 219 1268 309 343 1135 681 191 1471 Fragments arranged by size: 1471 1268 1135 681 343 309 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5617 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5617 SmaI CCC'GGG Cuts at: 1872 2944 1872 Size: 1072 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2709 3721 4622 4884 820 Size: 197 926 766 1012 901 262 1553 Fragments arranged by size: 1553 1012 926 901 766 262 197 SnaBI TAC'GTA Cuts at: 493 3408 493 Size: 2915 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5617 SphI G_CATG'C Cuts at: 1132 2975 1132 Size: 1843 3774 SspI AAT'ATT Cuts at: 5 52 3541 5 Size: 47 3489 2081 Fragments arranged by size: 3489 2081 47 StuI AGG'CCT Cuts at: 1517 2468 1517 Size: 951 4666 StyI C'CwwG_G Cuts at: 513 1065 3056 513 Size: 552 1991 3074 Fragments arranged by size: 3074 1991 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3644 3661 3814 3999 4444 325 Size: 1255 2064 17 153 185 445 1498 Fragments arranged by size: 2064 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2457 3863 5575 Size: 274 80 33 51 1443 480 1406 1712 Cuts at: 5575 96 Size: 138 Fragments arranged by size: 1712 1443 1406 480 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5577 5609 5577 Size: 32 5585 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5617 XbaI T'CTAG_A Cuts at: 2953 2953 Size: 5617 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5617 XmaI C'CCGG_G Cuts at: 1870 2942 1870 Size: 1072 4545 XmnI GAAnn'nnTTC Cuts at: 3746 3746 Size: 5617 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3425 276 Size: 53 83 186 936 1891 2468 Fragments arranged by size: 2468 1891 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AfeI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PpuMI PshAI PsiI PstI PvuI SalI SapI SbfI ScaI SexAI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PspOMI PspXI PsrI PvuII RsrII SacI SacII SanDI SfiI SfoI SrfI SwaI XcmI