Result of FASTA (omim) for pFN21AB0498
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0498, 418 aa
  1>>>pF1KB0498 418 - 418 aa - 418 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.7618+/-0.000332; mu= 0.6621+/- 0.021
 mean_var=156.7667+/-32.136, 0's: 0 Z-trim(120.0): 18  B-trim: 725 in 1/61
 Lambda= 0.102435
 statistics sampled from 34664 (34682) to 34664 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.407), width:  16
 Scan time:  7.540

The best scores are:                                      opt bits E(85289)
XP_016875258 (OMIM: 600392) PREDICTED: DNA repair  ( 418) 2793 424.4 2.6e-118
XP_005253778 (OMIM: 600392) PREDICTED: DNA repair  ( 418) 2793 424.4 2.6e-118
NP_602296 (OMIM: 600392) DNA repair protein RAD52  ( 418) 2793 424.4 2.6e-118
XP_011519293 (OMIM: 600392) PREDICTED: DNA repair  ( 418) 2793 424.4 2.6e-118
XP_011519292 (OMIM: 600392) PREDICTED: DNA repair  ( 418) 2793 424.4 2.6e-118
NP_001284348 (OMIM: 600392) DNA repair protein RAD ( 418) 2793 424.4 2.6e-118
XP_005253777 (OMIM: 600392) PREDICTED: DNA repair  ( 418) 2793 424.4 2.6e-118
NP_001284350 (OMIM: 600392) DNA repair protein RAD ( 341) 2271 347.2 3.7e-95
XP_011519295 (OMIM: 600392) PREDICTED: DNA repair  ( 340) 2136 327.3 3.7e-89
XP_011519297 (OMIM: 600392) PREDICTED: DNA repair  ( 320) 2003 307.6 2.9e-83
XP_016875259 (OMIM: 600392) PREDICTED: DNA repair  ( 384) 1913 294.3 3.4e-79
XP_016875260 (OMIM: 600392) PREDICTED: DNA repair  ( 301) 1654 256.0 9.2e-68
NP_001284351 (OMIM: 600392) DNA repair protein RAD ( 301) 1654 256.0 9.2e-68
NP_001284349 (OMIM: 600392) DNA repair protein RAD ( 226) 1046 166.1 7.9e-41


>>XP_016875258 (OMIM: 600392) PREDICTED: DNA repair prot  (418 aa)
 initn: 2793 init1: 2793 opt: 2793  Z-score: 2245.0  bits: 424.4 E(85289): 2.6e-118
Smith-Waterman score: 2793; 100.0% identity (100.0% similar) in 418 aa overlap (1-418:1-418)

               10        20        30        40        50        60
pF1KB0 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 PVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLAL
              310       320       330       340       350       360

              370       380       390       400       410        
pF1KB0 NNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
              370       380       390       400       410        

>>XP_005253778 (OMIM: 600392) PREDICTED: DNA repair prot  (418 aa)
 initn: 2793 init1: 2793 opt: 2793  Z-score: 2245.0  bits: 424.4 E(85289): 2.6e-118
Smith-Waterman score: 2793; 100.0% identity (100.0% similar) in 418 aa overlap (1-418:1-418)

               10        20        30        40        50        60
pF1KB0 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 PVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLAL
              310       320       330       340       350       360

              370       380       390       400       410        
pF1KB0 NNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
              370       380       390       400       410        

>>NP_602296 (OMIM: 600392) DNA repair protein RAD52 homo  (418 aa)
 initn: 2793 init1: 2793 opt: 2793  Z-score: 2245.0  bits: 424.4 E(85289): 2.6e-118
Smith-Waterman score: 2793; 100.0% identity (100.0% similar) in 418 aa overlap (1-418:1-418)

               10        20        30        40        50        60
pF1KB0 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_602 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_602 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_602 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_602 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_602 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 PVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_602 PVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLAL
              310       320       330       340       350       360

              370       380       390       400       410        
pF1KB0 NNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_602 NNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
              370       380       390       400       410        

>>XP_011519293 (OMIM: 600392) PREDICTED: DNA repair prot  (418 aa)
 initn: 2793 init1: 2793 opt: 2793  Z-score: 2245.0  bits: 424.4 E(85289): 2.6e-118
Smith-Waterman score: 2793; 100.0% identity (100.0% similar) in 418 aa overlap (1-418:1-418)

               10        20        30        40        50        60
pF1KB0 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 PVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLAL
              310       320       330       340       350       360

              370       380       390       400       410        
pF1KB0 NNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
              370       380       390       400       410        

>>XP_011519292 (OMIM: 600392) PREDICTED: DNA repair prot  (418 aa)
 initn: 2793 init1: 2793 opt: 2793  Z-score: 2245.0  bits: 424.4 E(85289): 2.6e-118
Smith-Waterman score: 2793; 100.0% identity (100.0% similar) in 418 aa overlap (1-418:1-418)

               10        20        30        40        50        60
pF1KB0 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 PVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLAL
              310       320       330       340       350       360

              370       380       390       400       410        
pF1KB0 NNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
              370       380       390       400       410        

>>NP_001284348 (OMIM: 600392) DNA repair protein RAD52 h  (418 aa)
 initn: 2793 init1: 2793 opt: 2793  Z-score: 2245.0  bits: 424.4 E(85289): 2.6e-118
Smith-Waterman score: 2793; 100.0% identity (100.0% similar) in 418 aa overlap (1-418:1-418)

               10        20        30        40        50        60
pF1KB0 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 PVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLAL
              310       320       330       340       350       360

              370       380       390       400       410        
pF1KB0 NNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
              370       380       390       400       410        

>>XP_005253777 (OMIM: 600392) PREDICTED: DNA repair prot  (418 aa)
 initn: 2793 init1: 2793 opt: 2793  Z-score: 2245.0  bits: 424.4 E(85289): 2.6e-118
Smith-Waterman score: 2793; 100.0% identity (100.0% similar) in 418 aa overlap (1-418:1-418)

               10        20        30        40        50        60
pF1KB0 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 PVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLAL
              310       320       330       340       350       360

              370       380       390       400       410        
pF1KB0 NNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
              370       380       390       400       410        

>>NP_001284350 (OMIM: 600392) DNA repair protein RAD52 h  (341 aa)
 initn: 2271 init1: 2271 opt: 2271  Z-score: 1829.5  bits: 347.2 E(85289): 3.7e-95
Smith-Waterman score: 2271; 100.0% identity (100.0% similar) in 341 aa overlap (78-418:1-341)

        50        60        70        80        90       100       
pF1KB0 GPEYISSRMAGGGQKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGV
                                     ::::::::::::::::::::::::::::::
NP_001                               MFGYNGWAHSITQQNVDFVDLNNGKFYVGV
                                             10        20        30

       110       120       130       140       150       160       
pF1KB0 CAFVRVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CAFVRVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCIL
               40        50        60        70        80        90

       170       180       190       200       210       220       
pF1KB0 DKDYLRSLNKLPRQLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DKDYLRSLNKLPRQLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSR
              100       110       120       130       140       150

       230       240       250       260       270       280       
pF1KB0 PSHAVIPADQDCSSRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSHAVIPADQDCSSRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKS
              160       170       180       190       200       210

       290       300       310       320       330       340       
pF1KB0 EAAPPAPPVTHSTPVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EAAPPAPPVTHSTPVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSS
              220       230       240       250       260       270

       350       360       370       380       390       400       
pF1KB0 RADPAQTSDTLALNNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RADPAQTSDTLALNNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKS
              280       290       300       310       320       330

       410        
pF1KB0 QDMKKRKYDPS
       :::::::::::
NP_001 QDMKKRKYDPS
              340 

>>XP_011519295 (OMIM: 600392) PREDICTED: DNA repair prot  (340 aa)
 initn: 2133 init1: 2133 opt: 2136  Z-score: 1721.7  bits: 327.3 E(85289): 3.7e-89
Smith-Waterman score: 2136; 99.4% identity (99.4% similar) in 327 aa overlap (1-326:1-327)

               10        20        30        40        50        60
pF1KB0 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
              250       260       270       280       290       300

              310       320        330       340       350         
pF1KB0 PVTVSEPLLEKDFLAGVTQELI-KTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLA
       :::::::::::::::::::::: : ::                                 
XP_011 PVTVSEPLLEKDFLAGVTQELISKYLEMLRLLKTTLKSGL                    
              310       320       330       340                    

>>XP_011519297 (OMIM: 600392) PREDICTED: DNA repair prot  (320 aa)
 initn: 2003 init1: 2003 opt: 2003  Z-score: 1615.9  bits: 307.6 E(85289): 2.9e-83
Smith-Waterman score: 2003; 98.7% identity (99.3% similar) in 307 aa overlap (112-418:14-320)

              90       100       110       120       130       140 
pF1KB0 NGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSYHEDVGYGVSEGLKSKALSLEK
                                     : .. :::::::::::::::::::::::::
XP_011                  MRCLVTMAGHTPSRSRMWDGSYHEDVGYGVSEGLKSKALSLEK
                                10        20        30        40   

             150       160       170       180       190       200 
pF1KB0 ARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPRQLPLEVDLTKAKRQDLEPSVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPRQLPLEVDLTKAKRQDLEPSVE
            50        60        70        80        90       100   

             210       220       230       240       250       260 
pF1KB0 EARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCSSRSLSSSAVESEATHQRKLRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCSSRSLSSSAVESEATHQRKLRQ
           110       120       130       140       150       160   

             270       280       290       300       310       320 
pF1KB0 KQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHSTPVTVSEPLLEKDFLAGVTQEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHSTPVTVSEPLLEKDFLAGVTQEL
           170       180       190       200       210       220   

             330       340       350       360       370       380 
pF1KB0 IKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLALNNQMVTQNRTPHSVCHQKPQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLALNNQMVTQNRTPHSVCHQKPQA
           230       240       250       260       270       280   

             390       400       410        
pF1KB0 KSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
       :::::::::::::::::::::::::::::::::::::
XP_011 KSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
           290       300       310       320




418 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:10:26 2016 done: Sat Nov  5 02:10:27 2016
 Total Scan time:  7.540 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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