(Linear) (Six-base) MAPSORT of: KIAA1007.seq Check: 4517 from: 1 to: 7113 KIAA1007.orf With 182 enzymes: SgfI * August 19, 2010 16:05 .. AatII G_ACGT'C Cuts at: 0 494 2088 7113 Size: 494 1594 5025 Fragments arranged by size: 5025 1594 494 AccI GT'mk_AC Cuts at: 0 1175 7113 Size: 1175 5938 Acc65I G'GTAC_C Cuts at: 0 6809 7113 Size: 6809 304 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1226 1401 3472 3580 3931 5671 5893 6819 Size: 1226 175 2071 108 351 1740 222 926 Cuts at: 6819 7113 Size: 294 Fragments arranged by size: 2071 1740 1226 926 351 294 222 175 108 AflII C'TTAA_G Cuts at: 0 619 4746 7113 Size: 619 4127 2367 Fragments arranged by size: 4127 2367 619 AflIII A'CryG_T Cuts at: 0 6443 7113 Size: 6443 670 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 1988 3950 5762 7077 7113 Size: 1988 1962 1812 1315 36 Fragments arranged by size: 1988 1962 1812 1315 36 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 4169 4201 7113 Size: 4169 32 2912 Fragments arranged by size: 4169 2912 32 AlwNI CAG_nnn'CTG Cuts at: 0 219 3384 4194 4534 4604 5587 6186 7113 Size: 219 3165 810 340 70 983 599 927 Fragments arranged by size: 3165 983 927 810 599 340 219 70 ApoI r'AATT_y Cuts at: 0 255 402 1056 1100 1811 2214 3358 3463 Size: 255 147 654 44 711 403 1144 105 Cuts at: 3463 3915 4561 5935 5960 6372 6741 7006 7113 Size: 452 646 1374 25 412 369 265 107 Fragments arranged by size: 1374 1144 711 654 646 452 412 403 369 265 255 147 107 105 44 25 AseI AT'TA_AT Cuts at: 0 3194 5366 5864 6017 7113 Size: 3194 2172 498 153 1096 Fragments arranged by size: 3194 2172 1096 498 153 AvaI C'yCGr_G Cuts at: 0 4940 7113 Size: 4940 2173 BamHI G'GATC_C Cuts at: 0 713 2824 7113 Size: 713 2111 4289 Fragments arranged by size: 4289 2111 713 BanI G'GyrC_C Cuts at: 0 2428 4095 5120 6809 7105 7113 Size: 2428 1667 1025 1689 296 8 Fragments arranged by size: 2428 1689 1667 1025 296 8 BanII G_rGCy'C Cuts at: 0 760 3257 7113 Size: 760 2497 3856 Fragments arranged by size: 3856 2497 760 BbsI GAAGACnn'nnnn_ Cuts at: 0 4516 5659 6940 7113 Size: 4516 1143 1281 173 Fragments arranged by size: 4516 1281 1143 173 BbvCI CC'TCA_GC Cuts at: 0 1372 4407 7113 Size: 1372 3035 2706 Fragments arranged by size: 3035 2706 1372 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 810 844 4690 4724 5759 5793 7113 Size: 810 34 3846 34 1035 34 1320 Fragments arranged by size: 3846 1320 1035 810 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 0 2708 6370 6600 7113 Size: 2708 3662 230 513 Fragments arranged by size: 3662 2708 513 230 BclI T'GATC_A Cuts at: 0 1656 3587 7113 Size: 1656 1931 3526 Fragments arranged by size: 3526 1931 1656 BfrBI ATG'CAT Cuts at: 0 1570 1617 5481 7113 Size: 1570 47 3864 1632 Fragments arranged by size: 3864 1632 1570 47 BglII A'GATC_T Cuts at: 0 417 462 1250 5331 7113 Size: 417 45 788 4081 1782 Fragments arranged by size: 4081 1782 788 417 45 BlpI GC'TnA_GC Cuts at: 0 3785 5729 7113 Size: 3785 1944 1384 Fragments arranged by size: 3785 1944 1384 Bme1580I G_kGCm'C Cuts at: 0 2431 3695 6268 7023 7113 Size: 2431 1264 2573 755 90 Fragments arranged by size: 2573 2431 1264 755 90 BmgBI CAC'GTC Cuts at: 0 1771 7113 Size: 1771 5342 BmrI ACTGGGnnnn_n' Cuts at: 0 432 1165 2434 2688 2886 7113 Size: 432 733 1269 254 198 4227 Fragments arranged by size: 4227 1269 733 432 254 198 BmtI G_CTAG'C Cuts at: 0 2102 7113 Size: 2102 5011 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 2003 3948 5330 7113 Size: 2003 1945 1382 1783 Fragments arranged by size: 2003 1945 1783 1382 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 981 1916 2087 3179 4861 5375 5504 6512 Size: 981 935 171 1092 1682 514 129 1008 Cuts at: 6512 6604 7113 Size: 92 509 Fragments arranged by size: 1682 1092 1008 981 935 514 509 171 129 92 Bpu10I CC'TnA_GC Cuts at: 0 1372 2659 3038 3050 4407 4472 4892 5723 Size: 1372 1287 379 12 1357 65 420 831 Cuts at: 5723 5996 7113 Size: 273 1117 Fragments arranged by size: 1372 1357 1287 1117 831 420 379 273 65 12 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 4871 5480 6081 7113 Size: 4871 609 601 1032 Fragments arranged by size: 4871 1032 609 601 BsaI GGTCTCn'nnnn_ Cuts at: 0 3481 5096 7113 Size: 3481 1615 2017 Fragments arranged by size: 3481 2017 1615 BsaBI GATnn'nnATC Cuts at: 0 203 1322 3902 6530 7113 Size: 203 1119 2580 2628 583 Fragments arranged by size: 2628 2580 1119 583 203 BsaHI Gr'CG_yC Cuts at: 0 491 2085 7113 Size: 491 1594 5028 Fragments arranged by size: 5028 1594 491 BsaWI w'CCGG_w Cuts at: 0 727 6806 7113 Size: 727 6079 307 Fragments arranged by size: 6079 727 307 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 0 220 250 533 563 6060 6090 7113 Size: 220 30 283 30 5497 30 1023 Fragments arranged by size: 5497 1023 283 220 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 0 538 541 553 3065 7113 Size: 538 3 12 2512 4048 Fragments arranged by size: 4048 2512 538 12 3 BseYI C'CCAG_C Cuts at: 0 338 4772 5405 6981 7082 7113 Size: 338 4434 633 1576 101 31 Fragments arranged by size: 4434 1576 633 338 101 31 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 0 305 853 1742 1994 2837 7113 Size: 305 548 889 252 843 4276 Fragments arranged by size: 4276 889 843 548 305 252 BsiEI CG_ry'CG Cuts at: 0 7052 7113 Size: 7052 61 BsiHKAI G_wGCw'C Cuts at: 0 356 668 760 993 1923 2379 3512 5457 Size: 356 312 92 233 930 456 1133 1945 Cuts at: 5457 5724 6644 6706 7113 Size: 267 920 62 407 Fragments arranged by size: 1945 1133 930 920 456 407 356 312 267 233 92 62 BsmI GAATG_Cn' Cuts at: 0 920 1139 2227 2293 3722 4298 5047 5481 Size: 920 219 1088 66 1429 576 749 434 Cuts at: 5481 6140 6792 7113 Size: 659 652 321 Fragments arranged by size: 1429 1088 920 749 659 652 576 434 321 219 66 BsmBI CGTCTCn'nnnn_ Cuts at: 0 1857 7113 Size: 1857 5256 Bsp1286I G_dGCh'C Cuts at: 0 356 668 760 993 1923 2379 2431 3257 Size: 356 312 92 233 930 456 52 826 Cuts at: 3257 3512 3695 5457 5724 6268 6644 6706 7023 Size: 255 183 1762 267 544 376 62 317 Cuts at: 7023 7113 Size: 90 Fragments arranged by size: 1762 930 826 544 456 376 356 317 312 267 255 233 183 92 90 62 52 BspEI T'CCGG_A Cuts at: 0 727 7113 Size: 727 6386 BspHI T'CATG_A Cuts at: 0 4370 5357 5916 7113 Size: 4370 987 559 1197 Fragments arranged by size: 4370 1197 987 559 BsrDI GCAATG_nn' Cuts at: 0 292 1628 3640 4722 5391 5447 5810 6461 Size: 292 1336 2012 1082 669 56 363 651 Cuts at: 6461 6662 7113 Size: 201 451 Fragments arranged by size: 2012 1336 1082 669 651 451 363 292 201 56 BsrGI T'GTAC_A Cuts at: 0 2412 4024 7011 7113 Size: 2412 1612 2987 102 Fragments arranged by size: 2987 2412 1612 102 BssSI C'ACGA_G Cuts at: 0 5821 7113 Size: 5821 1292 BstAPI GCAn_nnn'nTGC Cuts at: 0 1491 4161 7113 Size: 1491 2670 2952 Fragments arranged by size: 2952 2670 1491 BstBI TT'CG_AA Cuts at: 0 4902 7113 Size: 4902 2211 BstEII G'GTnAC_C Cuts at: 0 3102 3144 7113 Size: 3102 42 3969 Fragments arranged by size: 3969 3102 42 BstXI CCAn_nnnn'nTGG Cuts at: 0 3755 6941 7113 Size: 3755 3186 172 Fragments arranged by size: 3755 3186 172 BstYI r'GATC_y Cuts at: 0 417 462 713 956 1250 2824 2982 5331 Size: 417 45 251 243 294 1574 158 2349 Cuts at: 5331 5489 7113 Size: 158 1624 Fragments arranged by size: 2349 1624 1574 417 294 251 243 158 158 45 Bsu36I CC'TnA_GG Cuts at: 0 122 5527 7113 Size: 122 5405 1586 Fragments arranged by size: 5405 1586 122 BtgI C'CryG_G Cuts at: 0 659 2015 4031 4757 5095 7113 Size: 659 1356 2016 726 338 2018 Fragments arranged by size: 2018 2016 1356 726 659 338 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 0 191 7113 Size: 191 6922 BtsI GCAGTG_nn' Cuts at: 0 195 957 2288 2399 4162 5815 7113 Size: 195 762 1331 111 1763 1653 1298 Fragments arranged by size: 1763 1653 1331 1298 762 195 111 ClaI AT'CG_AT Cuts at: 0 4215 7113 Size: 4215 2898 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 0 4853 4888 7113 Size: 4853 35 2225 Fragments arranged by size: 4853 2225 35 DraI TTT'AAA Cuts at: 0 314 1859 2613 2868 7113 Size: 314 1545 754 255 4245 Fragments arranged by size: 4245 1545 754 314 255 DraIII CAC_nnn'GTG Cuts at: 0 1774 5120 7113 Size: 1774 3346 1993 Fragments arranged by size: 3346 1993 1774 DrdI GACnn_nn'nnGTC Cuts at: 0 490 2469 4072 7113 Size: 490 1979 1603 3041 Fragments arranged by size: 3041 1979 1603 490 EaeI y'GGCC_r Cuts at: 0 2482 3224 4874 5076 5589 7113 Size: 2482 742 1650 202 513 1524 Fragments arranged by size: 2482 1650 1524 742 513 202 EarI CTCTTCn'nnn_ Cuts at: 0 301 1339 1420 3326 3388 4697 4904 7113 Size: 301 1038 81 1906 62 1309 207 2209 Fragments arranged by size: 2209 1906 1309 1038 301 207 81 62 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 0 1901 7113 Size: 1901 5212 EcoICRI GAG'CTC Cuts at: 0 758 7113 Size: 758 6355 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 981 1226 1401 1916 2087 3179 3472 3580 Size: 981 245 175 515 171 1092 293 108 Cuts at: 3580 3931 4861 5375 5504 5671 5893 6512 6604 Size: 351 930 514 129 167 222 619 92 Cuts at: 6604 6819 7113 Size: 215 294 Fragments arranged by size: 1092 981 930 619 515 514 351 294 293 245 222 215 175 171 167 129 108 92 EcoNI CCTnn'n_nnAGG Cuts at: 0 3892 6259 7113 Size: 3892 2367 854 Fragments arranged by size: 3892 2367 854 EcoO109I rG'GnC_Cy Cuts at: 0 537 4531 5880 7113 Size: 537 3994 1349 1233 Fragments arranged by size: 3994 1349 1233 537 EcoRI G'AATT_C Cuts at: 0 402 7113 Size: 402 6711 EcoRV GAT'ATC Cuts at: 0 6732 7113 Size: 6732 381 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 0 600 3094 3834 7113 Size: 600 2494 740 3279 Fragments arranged by size: 3279 2494 740 600 FspI TGC'GCA Cuts at: 0 631 6574 6668 7113 Size: 631 5943 94 445 Fragments arranged by size: 5943 631 445 94 HaeII r_GCGC'y Cuts at: 0 6214 7113 Size: 6214 899 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 0 1 33 1350 1382 1854 1886 2121 2153 Size: 1 32 1317 32 472 32 235 32 Cuts at: 2153 3622 3654 5355 5387 5646 5678 6099 6131 Size: 1469 32 1701 32 259 32 421 32 Cuts at: 6131 6536 6568 7113 Size: 405 32 545 Fragments arranged by size: 1701 1469 1317 545 472 421 405 259 235 32 32 32 32 32 32 32 32 32 1 HindIII A'AGCT_T Cuts at: 0 454 1967 4787 5606 7113 Size: 454 1513 2820 819 1507 Fragments arranged by size: 2820 1513 1507 819 454 KpnI G_GTAC'C Cuts at: 0 6813 7113 Size: 6813 300 MfeI C'AATT_G Cuts at: 0 2025 4172 4479 6791 7113 Size: 2025 2147 307 2312 322 Fragments arranged by size: 2312 2147 2025 322 307 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 0 573 2593 4141 5453 5604 5987 7113 Size: 573 2020 1548 1312 151 383 1126 Fragments arranged by size: 2020 1548 1312 1126 573 383 151 MscI TGG'CCA Cuts at: 0 2484 3226 4876 7113 Size: 2484 742 1650 2237 Fragments arranged by size: 2484 2237 1650 742 MslI CAynn'nnrTG Cuts at: 0 703 1002 1516 2767 3505 4853 5257 7113 Size: 703 299 514 1251 738 1348 404 1856 Fragments arranged by size: 1856 1348 1251 738 703 514 404 299 MspA1I CmG'CkG Cuts at: 0 342 859 2176 4333 4459 5409 5587 7113 Size: 342 517 1317 2157 126 950 178 1526 Fragments arranged by size: 2157 1526 1317 950 517 342 178 126 NcoI C'CATG_G Cuts at: 0 2015 5095 7113 Size: 2015 3080 2018 Fragments arranged by size: 3080 2018 2015 NdeI CA'TA_TG Cuts at: 0 5085 7113 Size: 5085 2028 NheI G'CTAG_C Cuts at: 0 2098 7113 Size: 2098 5015 NsiI A_TGCA'T Cuts at: 0 1572 1619 5483 7113 Size: 1572 47 3864 1630 Fragments arranged by size: 3864 1630 1572 47 NspI r_CATG'y Cuts at: 0 163 1204 1449 1621 4355 4582 4858 6004 Size: 163 1041 245 172 2734 227 276 1146 Cuts at: 6004 6447 7113 Size: 443 666 Fragments arranged by size: 2734 1146 1041 666 443 276 245 227 172 163 PciI A'CATG_T Cuts at: 0 6443 7113 Size: 6443 670 PflMI CCAn_nnn'nTGG Cuts at: 0 2065 2335 4194 4206 5052 5412 6744 7113 Size: 2065 270 1859 12 846 360 1332 369 Fragments arranged by size: 2065 1859 1332 846 369 360 270 12 PfoI T'CCnGG_A Cuts at: 0 1089 3269 4187 7113 Size: 1089 2180 918 2926 Fragments arranged by size: 2926 2180 1089 918 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 2361 2393 4352 4384 7113 Size: 2361 32 1959 32 2729 Fragments arranged by size: 2729 2361 1959 32 32 PpuMI rG'GwC_Cy Cuts at: 0 537 5880 7113 Size: 537 5343 1233 Fragments arranged by size: 5343 1233 537 PshAI GACnn'nnGTC Cuts at: 0 2973 4748 7113 Size: 2973 1775 2365 Fragments arranged by size: 2973 2365 1775 PsiI TTA'TAA Cuts at: 0 1240 7113 Size: 1240 5873 PsrI GAACnnnnnnTACnnnnnnn_nnnnn' Cuts at: 0 2154 2186 5885 5917 7113 Size: 2154 32 3699 32 1196 Fragments arranged by size: 3699 2154 1196 32 32 PstI C_TGCA'G Cuts at: 0 2394 2606 3534 4518 5072 7113 Size: 2394 212 928 984 554 2041 Fragments arranged by size: 2394 2041 984 928 554 212 PvuII CAG'CTG Cuts at: 0 342 859 2176 4333 4459 5409 5587 7113 Size: 342 517 1317 2157 126 950 178 1526 Fragments arranged by size: 2157 1526 1317 950 517 342 178 126 SacI G_AGCT'C Cuts at: 0 760 7113 Size: 760 6353 SapI GCTCTTCn'nnn_ Cuts at: 0 1339 1420 3326 4904 7113 Size: 1339 81 1906 1578 2209 Fragments arranged by size: 2209 1906 1578 1339 81 SexAI A'CCwGG_T Cuts at: 0 44 7113 Size: 44 7069 SfcI C'TryA_G Cuts at: 0 2390 2602 3492 3530 4514 4979 5034 5068 Size: 2390 212 890 38 984 465 55 34 Cuts at: 5068 6583 7113 Size: 1515 530 Fragments arranged by size: 2390 1515 984 890 530 465 212 55 38 34 SmlI C'TyrA_G Cuts at: 0 619 4746 4886 5495 6060 7113 Size: 619 4127 140 609 565 1053 Fragments arranged by size: 4127 1053 619 609 565 140 SphI G_CATG'C Cuts at: 0 1621 7113 Size: 1621 5492 SspI AAT'ATT Cuts at: 0 6205 7113 Size: 6205 908 StuI AGG'CCT Cuts at: 0 1705 5525 6066 7113 Size: 1705 3820 541 1047 Fragments arranged by size: 3820 1705 1047 541 StyI C'CwwG_G Cuts at: 0 1192 1530 2015 3367 3754 5095 5883 6940 Size: 1192 338 485 1352 387 1341 788 1057 Cuts at: 6940 7113 Size: 173 Fragments arranged by size: 1352 1341 1192 1057 788 485 387 338 173 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 0 2203 5550 5671 7038 7113 Size: 2203 3347 121 1367 75 Fragments arranged by size: 3347 2203 1367 121 75 TatI w'GTAC_w Cuts at: 0 369 2412 4024 4052 5689 7011 7113 Size: 369 2043 1612 28 1637 1322 102 Fragments arranged by size: 2043 1637 1612 1322 369 102 28 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 948 980 7113 Size: 948 32 6133 Fragments arranged by size: 6133 948 32 Tth111I GACn'n_nGTC Cuts at: 0 270 1868 7113 Size: 270 1598 5245 Fragments arranged by size: 5245 1598 270 XbaI T'CTAG_A Cuts at: 0 2977 7113 Size: 2977 4136 XcmI CCAnnnn_n'nnnnTGG Cuts at: 0 565 3752 7113 Size: 565 3187 3361 Fragments arranged by size: 3361 3187 565 XmnI GAAnn'nnTTC Cuts at: 0 900 7113 Size: 900 6213 ZraI GAC'GTC Cuts at: 0 492 2086 7113 Size: 492 1594 5027 Fragments arranged by size: 5027 1594 492 Enzymes that do cut: AatII AccI Acc65I AcuI AflII AflIII AlfI AloI AlwNI ApoI AseI AvaI BamHI BanI BanII BbsI BbvCI BcgI BciVI BclI BfrBI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BsrDI BsrGI BssSI BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI EcoRV FalI FspI HaeII Hin4I HindIII KpnI MfeI MmeI MscI MslI MspA1I NcoI NdeI NheI NsiI NspI PciI PflMI PfoI PpiI PpuMI PshAI PsiI PsrI PstI PvuII SacI SapI SexAI SfcI SmlI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XmnI ZraI Enzymes that do not cut: AarI AclI AfeI AgeI AhdI AleI ApaI ApaLI AscI AsiSI AvrII BaeI BbeI BglI BsaAI BsiWI BspMI BsrBI BsrFI BssHII BstZ17I EagI FseI FspAI HincII HpaI KasI MluI NaeI NarI NgoMIV NotI NruI PacI PasI PmeI PmlI PspOMI PspXI PvuI RsrII SacII SalI SanDI SbfI ScaI SfiI SfoI SgfI SgrAI SmaI SnaBI SpeI SrfI SwaI XhoI XmaI