Result of FASTA (omim) for
pFN21AB5360
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5360, 368 aa
1>>>pF1KB5360 368 - 368 aa - 368 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2139+/-0.000408; mu= 12.1002+/- 0.025
mean_var=117.4226+/-26.972, 0's: 0 Z-trim(114.6): 180 B-trim: 2137 in 2/52
Lambda= 0.118358
statistics sampled from 24184 (24499) to 24184 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.669), E-opt: 0.2 (0.287), width: 16
Scan time: 6.830
The best scores are: opt bits E(85289)
NP_003601 (OMIM: 603343) mRNA export factor [Homo ( 368) 2574 450.9 2.2e-126
XP_005260639 (OMIM: 603343) PREDICTED: mRNA export ( 368) 2574 450.9 2.2e-126
NP_001015885 (OMIM: 603343) mRNA export factor [Ho ( 368) 2574 450.9 2.2e-126
XP_011527390 (OMIM: 603343) PREDICTED: mRNA export ( 368) 2574 450.9 2.2e-126
XP_011527391 (OMIM: 603343) PREDICTED: mRNA export ( 368) 2574 450.9 2.2e-126
XP_005260640 (OMIM: 603343) PREDICTED: mRNA export ( 406) 2574 450.9 2.3e-126
XP_016883597 (OMIM: 603343) PREDICTED: mRNA export ( 357) 2382 418.1 1.6e-116
XP_011527389 (OMIM: 603343) PREDICTED: mRNA export ( 357) 2382 418.1 1.6e-116
NP_001007794 (OMIM: 603719) mitotic checkpoint pro ( 326) 664 124.7 3e-28
NP_004716 (OMIM: 603719) mitotic checkpoint protei ( 328) 664 124.7 3e-28
NP_438172 (OMIM: 609012) WD repeat-containing prot ( 334) 232 50.9 4.9e-06
NP_060058 (OMIM: 609012) WD repeat-containing prot ( 334) 232 50.9 4.9e-06
XP_005272220 (OMIM: 609012) PREDICTED: WD repeat-c ( 334) 232 50.9 4.9e-06
NP_004805 (OMIM: 607797) U5 small nuclear ribonucl ( 357) 202 45.8 0.00018
NP_942593 (OMIM: 610767,611081) autophagy-related ( 444) 192 44.2 0.00069
XP_005246143 (OMIM: 610767,611081) PREDICTED: auto ( 463) 192 44.2 0.00071
XP_005246141 (OMIM: 610767,611081) PREDICTED: auto ( 480) 192 44.2 0.00073
NP_001177196 (OMIM: 610767,611081) autophagy-relat ( 491) 192 44.2 0.00074
NP_001177195 (OMIM: 610767,611081) autophagy-relat ( 523) 192 44.3 0.00078
XP_006712671 (OMIM: 610767,611081) PREDICTED: auto ( 540) 192 44.3 0.0008
NP_060444 (OMIM: 610767,611081) autophagy-related ( 588) 192 44.3 0.00085
XP_016863186 (OMIM: 609005) PREDICTED: WD repeat-c ( 982) 195 45.0 0.00087
NP_110430 (OMIM: 610767,611081) autophagy-related ( 607) 192 44.3 0.00087
XP_005246139 (OMIM: 610767,611081) PREDICTED: auto ( 624) 192 44.3 0.00089
XP_005262782 (OMIM: 609005) PREDICTED: WD repeat-c (1216) 195 45.1 0.001
NP_851782 (OMIM: 609005) WD repeat-containing prot (1283) 195 45.1 0.0011
XP_011529884 (OMIM: 609005) PREDICTED: WD repeat-c (1290) 195 45.1 0.0011
XP_016863178 (OMIM: 609005) PREDICTED: WD repeat-c (1307) 195 45.1 0.0011
XP_016863179 (OMIM: 609005) PREDICTED: WD repeat-c (1307) 195 45.1 0.0011
XP_016863175 (OMIM: 609005) PREDICTED: WD repeat-c (1314) 195 45.1 0.0011
XP_016863176 (OMIM: 609005) PREDICTED: WD repeat-c (1314) 195 45.1 0.0011
XP_016863177 (OMIM: 609005) PREDICTED: WD repeat-c (1314) 195 45.1 0.0011
NP_733828 (OMIM: 609005) WD repeat-containing prot (1322) 195 45.1 0.0011
NP_006089 (OMIM: 176981) receptor of activated pro ( 317) 184 42.7 0.0014
NP_008882 (OMIM: 601787) transcription initiation ( 800) 181 42.5 0.0039
XP_016866423 (OMIM: 215100,266500,601757,614879) P ( 199) 169 40.0 0.0058
NP_115708 (OMIM: 616850) WD repeat domain-containi ( 315) 170 40.3 0.0072
NP_001093207 (OMIM: 616850) WD repeat domain-conta ( 315) 170 40.3 0.0072
NP_000279 (OMIM: 215100,266500,601757,614879) pero ( 323) 169 40.2 0.0083
NP_001269467 (OMIM: 139380,613065,616973) guanine ( 240) 167 39.7 0.0084
>>NP_003601 (OMIM: 603343) mRNA export factor [Homo sapi (368 aa)
initn: 2574 init1: 2574 opt: 2574 Z-score: 2390.1 bits: 450.9 E(85289): 2.2e-126
Smith-Waterman score: 2574; 100.0% identity (100.0% similar) in 368 aa overlap (1-368:1-368)
10 20 30 40 50 60
pF1KB5 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 DKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE
310 320 330 340 350 360
pF1KB5 ELKPRNKK
::::::::
NP_003 ELKPRNKK
>>XP_005260639 (OMIM: 603343) PREDICTED: mRNA export fac (368 aa)
initn: 2574 init1: 2574 opt: 2574 Z-score: 2390.1 bits: 450.9 E(85289): 2.2e-126
Smith-Waterman score: 2574; 100.0% identity (100.0% similar) in 368 aa overlap (1-368:1-368)
10 20 30 40 50 60
pF1KB5 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 DKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE
310 320 330 340 350 360
pF1KB5 ELKPRNKK
::::::::
XP_005 ELKPRNKK
>>NP_001015885 (OMIM: 603343) mRNA export factor [Homo s (368 aa)
initn: 2574 init1: 2574 opt: 2574 Z-score: 2390.1 bits: 450.9 E(85289): 2.2e-126
Smith-Waterman score: 2574; 100.0% identity (100.0% similar) in 368 aa overlap (1-368:1-368)
10 20 30 40 50 60
pF1KB5 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 DKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE
310 320 330 340 350 360
pF1KB5 ELKPRNKK
::::::::
NP_001 ELKPRNKK
>>XP_011527390 (OMIM: 603343) PREDICTED: mRNA export fac (368 aa)
initn: 2574 init1: 2574 opt: 2574 Z-score: 2390.1 bits: 450.9 E(85289): 2.2e-126
Smith-Waterman score: 2574; 100.0% identity (100.0% similar) in 368 aa overlap (1-368:1-368)
10 20 30 40 50 60
pF1KB5 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 DKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE
310 320 330 340 350 360
pF1KB5 ELKPRNKK
::::::::
XP_011 ELKPRNKK
>>XP_011527391 (OMIM: 603343) PREDICTED: mRNA export fac (368 aa)
initn: 2574 init1: 2574 opt: 2574 Z-score: 2390.1 bits: 450.9 E(85289): 2.2e-126
Smith-Waterman score: 2574; 100.0% identity (100.0% similar) in 368 aa overlap (1-368:1-368)
10 20 30 40 50 60
pF1KB5 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 DKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE
310 320 330 340 350 360
pF1KB5 ELKPRNKK
::::::::
XP_011 ELKPRNKK
>>XP_005260640 (OMIM: 603343) PREDICTED: mRNA export fac (406 aa)
initn: 2574 init1: 2574 opt: 2574 Z-score: 2389.5 bits: 450.9 E(85289): 2.3e-126
Smith-Waterman score: 2574; 100.0% identity (100.0% similar) in 368 aa overlap (1-368:39-406)
10 20 30
pF1KB5 MSLFGTTSGFGTSGTSMFGSATTDNHNPMK
::::::::::::::::::::::::::::::
XP_005 PPGSALLRDAGARAGLLTKLRYWALEARFKMSLFGTTSGFGTSGTSMFGSATTDNHNPMK
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB5 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB5 DVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWD
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB5 KTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESP
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB5 LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAP
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB5 QDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIF
310 320 330 340 350 360
340 350 360
pF1KB5 AYASSYDWSKGHEFYNPQKKNYIFLRNAAEELKPRNKK
::::::::::::::::::::::::::::::::::::::
XP_005 AYASSYDWSKGHEFYNPQKKNYIFLRNAAEELKPRNKK
370 380 390 400
>>XP_016883597 (OMIM: 603343) PREDICTED: mRNA export fac (357 aa)
initn: 2382 init1: 2382 opt: 2382 Z-score: 2213.0 bits: 418.1 E(85289): 1.6e-116
Smith-Waterman score: 2382; 100.0% identity (100.0% similar) in 340 aa overlap (1-340:1-340)
10 20 30 40 50 60
pF1KB5 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 DKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE
::::::::::::::::::::::::::::::::::::::::
XP_016 DKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKACCCFCVSLFEGLLCEP
310 320 330 340 350
pF1KB5 ELKPRNKK
>>XP_011527389 (OMIM: 603343) PREDICTED: mRNA export fac (357 aa)
initn: 2382 init1: 2382 opt: 2382 Z-score: 2213.0 bits: 418.1 E(85289): 1.6e-116
Smith-Waterman score: 2382; 100.0% identity (100.0% similar) in 340 aa overlap (1-340:1-340)
10 20 30 40 50 60
pF1KB5 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 DKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE
::::::::::::::::::::::::::::::::::::::::
XP_011 DKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKACCCFCVSLFEGLLCEP
310 320 330 340 350
pF1KB5 ELKPRNKK
>>NP_001007794 (OMIM: 603719) mitotic checkpoint protein (326 aa)
initn: 594 init1: 211 opt: 664 Z-score: 628.1 bits: 124.7 E(85289): 3e-28
Smith-Waterman score: 675; 35.2% identity (68.6% similar) in 338 aa overlap (31-366:6-325)
10 20 30 40 50 60
pF1KB5 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
...... :.:.:. ..::: : ..::...
NP_001 MTGSNEFKLNQPPEDGISSVKFSPNT--SQFLLVS
10 20 30
70 80 90 100 110 120
pF1KB5 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
:: ..:: ..: ... . : : ::: ::: : : ....... :. :: ::...:
NP_001 SWDTSVRLYDVPANSMRL-KYQ--HTGAVLD-CAFYDPTHAWSGGLDHQLKMHDLNTDQE
40 50 60 70 80
130 140 150 160 170 180
pF1KB5 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
.. ::::.. ... :. . ..:::::.:.:.:: :. ... ::. : .:
NP_001 NLVGTHDAPIRCVEY--CPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKVYTLSVSG
90 100 110 120 130 140
190 200 210 220 230 240
pF1KB5 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
.:.:: : ..:..:.:. .: :: ::.: ::. : .:: :..:.::::::
NP_001 DRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQ----GYVLSSIEGRV
150 160 170 180 190 200
250 260 270 280 290
pF1KB5 AIHYINP-PNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF
:..:..: :. : ...::::: . .: ..:: ::.:.:: .:.:.:: :::: ..
NP_001 AVEYLDPSPEVQKKKYAFKCHRLKENNI---EQIYPVNAISFHNIHNTFATGGSDGFVNI
210 220 230 240 250 260
300 310 320 330 340 350
pF1KB5 WDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAA
:: . .: .. :.. :...:. .: :::: . . . .:. . ::.:...
NP_001 WDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMY-EMDDTEHPE--DGIFIRQVT
270 280 290 300 310
360
pF1KB5 E-ELKPRNKK
. : ::..
NP_001 DAETKPKST
320
>>NP_004716 (OMIM: 603719) mitotic checkpoint protein BU (328 aa)
initn: 594 init1: 211 opt: 664 Z-score: 628.1 bits: 124.7 E(85289): 3e-28
Smith-Waterman score: 675; 35.2% identity (68.6% similar) in 338 aa overlap (31-366:6-325)
10 20 30 40 50 60
pF1KB5 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
...... :.:.:. ..::: : ..::...
NP_004 MTGSNEFKLNQPPEDGISSVKFSPNT--SQFLLVS
10 20 30
70 80 90 100 110 120
pF1KB5 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
:: ..:: ..: ... . : : ::: ::: : : ....... :. :: ::...:
NP_004 SWDTSVRLYDVPANSMRL-KYQ--HTGAVLD-CAFYDPTHAWSGGLDHQLKMHDLNTDQE
40 50 60 70 80
130 140 150 160 170 180
pF1KB5 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
.. ::::.. ... :. . ..:::::.:.:.:: :. ... ::. : .:
NP_004 NLVGTHDAPIRCVEY--CPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKVYTLSVSG
90 100 110 120 130 140
190 200 210 220 230 240
pF1KB5 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
.:.:: : ..:..:.:. .: :: ::.: ::. : .:: :..:.::::::
NP_004 DRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQ----GYVLSSIEGRV
150 160 170 180 190 200
250 260 270 280 290
pF1KB5 AIHYINP-PNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF
:..:..: :. : ...::::: . .: ..:: ::.:.:: .:.:.:: :::: ..
NP_004 AVEYLDPSPEVQKKKYAFKCHRLKENNI---EQIYPVNAISFHNIHNTFATGGSDGFVNI
210 220 230 240 250 260
300 310 320 330 340 350
pF1KB5 WDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAA
:: . .: .. :.. :...:. .: :::: . . . .:. . ::.:...
NP_004 WDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMY-EMDDTEHPE--DGIFIRQVT
270 280 290 300 310
360
pF1KB5 E-ELKPRNKK
. : ::..
NP_004 DAETKPKSPCT
320
368 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 12:29:57 2016 done: Sat Nov 5 12:29:58 2016
Total Scan time: 6.830 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]