FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3612, 115 aa 1>>>pF1KE3612 115 - 115 aa - 115 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2785+/-0.000239; mu= 11.8021+/- 0.015 mean_var=68.5175+/-13.695, 0's: 0 Z-trim(123.0): 2 B-trim: 908 in 1/59 Lambda= 0.154944 statistics sampled from 42008 (42017) to 42008 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.839), E-opt: 0.2 (0.493), width: 16 Scan time: 4.990 The best scores are: opt bits E(85289) NP_001167609 (OMIM: 118440) cholecystokinin prepro ( 115) 775 180.5 5e-46 NP_000720 (OMIM: 118440) cholecystokinin prepropro ( 115) 775 180.5 5e-46 >>NP_001167609 (OMIM: 118440) cholecystokinin preproprot (115 aa) initn: 775 init1: 775 opt: 775 Z-score: 947.3 bits: 180.5 E(85289): 5e-46 Smith-Waterman score: 775; 100.0% identity (100.0% similar) in 115 aa overlap (1-115:1-115) 10 20 30 40 50 60 pF1KE3 MNSGVCLCVLMAVLAAGALTQPVPPADPAGSGLQRAEEAPRRQLRVSQRTDGESRAHLGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MNSGVCLCVLMAVLAAGALTQPVPPADPAGSGLQRAEEAPRRQLRVSQRTDGESRAHLGA 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 LLARYIQQARKAPSGRMSIVKNLQNLDPSHRISDRDYMGWMDFGRRSAEEYEYPS ::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LLARYIQQARKAPSGRMSIVKNLQNLDPSHRISDRDYMGWMDFGRRSAEEYEYPS 70 80 90 100 110 >>NP_000720 (OMIM: 118440) cholecystokinin preproprotein (115 aa) initn: 775 init1: 775 opt: 775 Z-score: 947.3 bits: 180.5 E(85289): 5e-46 Smith-Waterman score: 775; 100.0% identity (100.0% similar) in 115 aa overlap (1-115:1-115) 10 20 30 40 50 60 pF1KE3 MNSGVCLCVLMAVLAAGALTQPVPPADPAGSGLQRAEEAPRRQLRVSQRTDGESRAHLGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MNSGVCLCVLMAVLAAGALTQPVPPADPAGSGLQRAEEAPRRQLRVSQRTDGESRAHLGA 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 LLARYIQQARKAPSGRMSIVKNLQNLDPSHRISDRDYMGWMDFGRRSAEEYEYPS ::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 LLARYIQQARKAPSGRMSIVKNLQNLDPSHRISDRDYMGWMDFGRRSAEEYEYPS 70 80 90 100 110 115 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 22:50:14 2016 done: Sat Nov 5 22:50:15 2016 Total Scan time: 4.990 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]