FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1521, 329 aa 1>>>pF1KE1521 329 - 329 aa - 329 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8367+/-0.000383; mu= 13.9195+/- 0.024 mean_var=92.8679+/-18.149, 0's: 0 Z-trim(116.1): 111 B-trim: 879 in 1/55 Lambda= 0.133089 statistics sampled from 26828 (26984) to 26828 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.689), E-opt: 0.2 (0.316), width: 16 Scan time: 6.580 The best scores are: opt bits E(85289) NP_787058 (OMIM: 601020) T-lymphocyte activation a ( 329) 2203 433.0 4.1e-121 NP_008820 (OMIM: 601020) T-lymphocyte activation a ( 323) 2153 423.4 3.1e-118 NP_001193854 (OMIM: 601020) T-lymphocyte activatio ( 247) 1658 328.3 1e-89 NP_795711 (OMIM: 601020) T-lymphocyte activation a ( 275) 1486 295.3 9.8e-80 NP_001193853 (OMIM: 601020) T-lymphocyte activatio ( 217) 1309 261.3 1.4e-69 NP_005182 (OMIM: 112203) T-lymphocyte activation a ( 288) 277 63.2 7.7e-10 XP_016863009 (OMIM: 112203) PREDICTED: T-lymphocyt ( 249) 243 56.6 6.3e-08 XP_011527816 (OMIM: 605717) PREDICTED: ICOS ligand ( 361) 242 56.5 9.6e-08 XP_011511629 (OMIM: 112203) PREDICTED: T-lymphocyt ( 217) 234 54.8 1.9e-07 NP_001316557 (OMIM: 605715) CD276 antigen isoform ( 316) 233 54.8 2.9e-07 NP_079516 (OMIM: 605715) CD276 antigen isoform b p ( 316) 233 54.8 2.9e-07 XP_011527818 (OMIM: 605717) PREDICTED: ICOS ligand ( 334) 225 53.3 8.7e-07 NP_056074 (OMIM: 605717) ICOS ligand isoform a pre ( 302) 219 52.1 1.8e-06 XP_011527817 (OMIM: 605717) PREDICTED: ICOS ligand ( 304) 219 52.1 1.8e-06 NP_001269979 (OMIM: 605717) ICOS ligand isoform b ( 309) 219 52.1 1.8e-06 XP_016883799 (OMIM: 605717) PREDICTED: ICOS ligand ( 275) 202 48.8 1.6e-05 NP_054862 (OMIM: 605402) programmed cell death 1 l ( 290) 202 48.8 1.7e-05 NP_001015887 (OMIM: 608351) immunoglobulin superfa ( 431) 200 48.5 3e-05 XP_011510772 (OMIM: 608351) PREDICTED: immunoglobu ( 430) 197 48.0 4.4e-05 NP_689751 (OMIM: 608351) immunoglobulin superfamil ( 430) 197 48.0 4.4e-05 XP_011510771 (OMIM: 608351) PREDICTED: immunoglobu ( 430) 197 48.0 4.4e-05 XP_011510770 (OMIM: 608351) PREDICTED: immunoglobu ( 443) 197 48.0 4.5e-05 XP_011510766 (OMIM: 608351) PREDICTED: immunoglobu ( 480) 197 48.0 4.8e-05 XP_011510765 (OMIM: 608351) PREDICTED: immunoglobu ( 480) 197 48.0 4.8e-05 XP_011510767 (OMIM: 608351) PREDICTED: immunoglobu ( 480) 197 48.0 4.8e-05 XP_011510764 (OMIM: 608351) PREDICTED: immunoglobu ( 481) 197 48.0 4.8e-05 NP_001723 (OMIM: 601610) butyrophilin subfamily 1 ( 526) 195 47.6 6.7e-05 XP_005249397 (OMIM: 601610) PREDICTED: butyrophili ( 626) 195 47.7 7.7e-05 XP_011510776 (OMIM: 608351) PREDICTED: immunoglobu ( 323) 186 45.8 0.00015 XP_011510769 (OMIM: 608351) PREDICTED: immunoglobu ( 453) 184 45.5 0.00026 NP_078902 (OMIM: 608162) V-set domain-containing T ( 282) 181 44.8 0.00027 XP_016857824 (OMIM: 608162) PREDICTED: V-set domai ( 287) 181 44.8 0.00027 XP_011520398 (OMIM: 605715) PREDICTED: CD276 antig ( 534) 181 45.0 0.00044 NP_001019907 (OMIM: 605715) CD276 antigen isoform ( 534) 181 45.0 0.00044 XP_016878127 (OMIM: 605715) PREDICTED: CD276 antig ( 534) 181 45.0 0.00044 XP_005254757 (OMIM: 605715) PREDICTED: CD276 antig ( 534) 181 45.0 0.00044 XP_011520397 (OMIM: 605715) PREDICTED: CD276 antig ( 534) 181 45.0 0.00044 XP_011510774 (OMIM: 608351) PREDICTED: immunoglobu ( 406) 174 43.5 0.0009 NP_001300958 (OMIM: 605402) programmed cell death ( 245) 171 42.8 0.00091 XP_011510773 (OMIM: 608351) PREDICTED: immunoglobu ( 429) 174 43.5 0.00094 XP_011510768 (OMIM: 608351) PREDICTED: immunoglobu ( 457) 174 43.6 0.00099 XP_011512570 (OMIM: 613594) PREDICTED: butyrophili ( 339) 172 43.1 0.001 XP_006715042 (OMIM: 613594) PREDICTED: butyrophili ( 339) 172 43.1 0.001 XP_006715043 (OMIM: 613594) PREDICTED: butyrophili ( 339) 172 43.1 0.001 XP_006715044 (OMIM: 613594) PREDICTED: butyrophili ( 339) 172 43.1 0.001 XP_011512569 (OMIM: 613594) PREDICTED: butyrophili ( 339) 172 43.1 0.001 XP_011512571 (OMIM: 613594) PREDICTED: butyrophili ( 297) 164 41.5 0.0027 XP_016865702 (OMIM: 613594) PREDICTED: butyrophili ( 297) 164 41.5 0.0027 XP_006715045 (OMIM: 613594) PREDICTED: butyrophili ( 297) 164 41.5 0.0027 NP_001184177 (OMIM: 613594) butyrophilin subfamily ( 311) 162 41.1 0.0036 >>NP_787058 (OMIM: 601020) T-lymphocyte activation antig (329 aa) initn: 2203 init1: 2203 opt: 2203 Z-score: 2295.5 bits: 433.0 E(85289): 4.1e-121 Smith-Waterman score: 2203; 99.7% identity (100.0% similar) in 329 aa overlap (1-329:1-329) 10 20 30 40 50 60 pF1KE1 MDPQCTMGLSNILFVMAFLLSGAAPLKIQAYFNETADLPCQFANSQNQSLSELVVFWQDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_787 MDPQCTMGLSNILFVMAFLLSGAAPLKIQAYFNETADLPCQFANSQNQSLSELVVFWQDQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 ENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_787 ENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGM 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 IRIHQMNSELSVLANFSQPEIVPISNITENVYINLTCSSIHGYPEPKKMSVLLRTKNSTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_787 IRIHQMNSELSVLANFSQPEIVPISNITENVYINLTCSSIHGYPEPKKMSVLLRTKNSTI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 EYDGIMQKSQDNVTELYDVSISLSVSFPDVTSNMTIFCILETDKTRLLSSPFSIELEDPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_787 EYDGIMQKSQDNVTELYDVSISLSVSFPDVTSNMTIFCILETDKTRLLSSPFSIELEDPQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 PPPDHIPWITAVLPTVIICVMVFCLILWKWKKKKRPRNSYKCGTNTMEREESEQTKKREK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_787 PPPDHIPWITAVLPTVIICVMVFCLILWKWKKKKRPRNSYKCGTNTMEREESEQTKKREK 250 260 270 280 290 300 310 320 pF1KE1 IHIPERSDETQRVFKSSKTSSCDKSDTCF :::::::::.::::::::::::::::::: NP_787 IHIPERSDEAQRVFKSSKTSSCDKSDTCF 310 320 >>NP_008820 (OMIM: 601020) T-lymphocyte activation antig (323 aa) initn: 2153 init1: 2153 opt: 2153 Z-score: 2243.7 bits: 423.4 E(85289): 3.1e-118 Smith-Waterman score: 2153; 99.7% identity (100.0% similar) in 323 aa overlap (7-329:1-323) 10 20 30 40 50 60 pF1KE1 MDPQCTMGLSNILFVMAFLLSGAAPLKIQAYFNETADLPCQFANSQNQSLSELVVFWQDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 MGLSNILFVMAFLLSGAAPLKIQAYFNETADLPCQFANSQNQSLSELVVFWQDQ 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 ENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 ENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGM 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE1 IRIHQMNSELSVLANFSQPEIVPISNITENVYINLTCSSIHGYPEPKKMSVLLRTKNSTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 IRIHQMNSELSVLANFSQPEIVPISNITENVYINLTCSSIHGYPEPKKMSVLLRTKNSTI 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE1 EYDGIMQKSQDNVTELYDVSISLSVSFPDVTSNMTIFCILETDKTRLLSSPFSIELEDPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 EYDGIMQKSQDNVTELYDVSISLSVSFPDVTSNMTIFCILETDKTRLLSSPFSIELEDPQ 180 190 200 210 220 230 250 260 270 280 290 300 pF1KE1 PPPDHIPWITAVLPTVIICVMVFCLILWKWKKKKRPRNSYKCGTNTMEREESEQTKKREK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 PPPDHIPWITAVLPTVIICVMVFCLILWKWKKKKRPRNSYKCGTNTMEREESEQTKKREK 240 250 260 270 280 290 310 320 pF1KE1 IHIPERSDETQRVFKSSKTSSCDKSDTCF :::::::::.::::::::::::::::::: NP_008 IHIPERSDEAQRVFKSSKTSSCDKSDTCF 300 310 320 >>NP_001193854 (OMIM: 601020) T-lymphocyte activation an (247 aa) initn: 1658 init1: 1658 opt: 1658 Z-score: 1731.6 bits: 328.3 E(85289): 1e-89 Smith-Waterman score: 1658; 99.6% identity (100.0% similar) in 247 aa overlap (83-329:1-247) 60 70 80 90 100 110 pF1KE1 LVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCII :::::::::::::::::::::::::::::: NP_001 MGRTSFDSDSWTLRLHNLQIKDKGLYQCII 10 20 30 120 130 140 150 160 170 pF1KE1 HHKKPTGMIRIHQMNSELSVLANFSQPEIVPISNITENVYINLTCSSIHGYPEPKKMSVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 HHKKPTGMIRIHQMNSELSVLANFSQPEIVPISNITENVYINLTCSSIHGYPEPKKMSVL 40 50 60 70 80 90 180 190 200 210 220 230 pF1KE1 LRTKNSTIEYDGIMQKSQDNVTELYDVSISLSVSFPDVTSNMTIFCILETDKTRLLSSPF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LRTKNSTIEYDGIMQKSQDNVTELYDVSISLSVSFPDVTSNMTIFCILETDKTRLLSSPF 100 110 120 130 140 150 240 250 260 270 280 290 pF1KE1 SIELEDPQPPPDHIPWITAVLPTVIICVMVFCLILWKWKKKKRPRNSYKCGTNTMEREES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SIELEDPQPPPDHIPWITAVLPTVIICVMVFCLILWKWKKKKRPRNSYKCGTNTMEREES 160 170 180 190 200 210 300 310 320 pF1KE1 EQTKKREKIHIPERSDETQRVFKSSKTSSCDKSDTCF :::::::::::::::::.::::::::::::::::::: NP_001 EQTKKREKIHIPERSDEAQRVFKSSKTSSCDKSDTCF 220 230 240 >>NP_795711 (OMIM: 601020) T-lymphocyte activation antig (275 aa) initn: 1486 init1: 1486 opt: 1486 Z-score: 1552.5 bits: 295.3 E(85289): 9.8e-80 Smith-Waterman score: 1683; 84.8% identity (85.1% similar) in 323 aa overlap (7-329:1-275) 10 20 30 40 50 60 pF1KE1 MDPQCTMGLSNILFVMAFLLSGAAPLKIQAYFNETADLPCQFANSQNQSLSELVVFWQDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_795 MGLSNILFVMAFLLSGAAPLKIQAYFNETADLPCQFANSQNQSLSELVVFWQDQ 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 ENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_795 ENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGM 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE1 IRIHQMNSELSVLANFSQPEIVPISNITENVYINLTCSSIHGYPEPKKMSVLLRTKNSTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_795 IRIHQMNSELSVLANFSQPEIVPISNITENVYINLTCSSIHGYPEPKKMSVLLRTKNSTI 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE1 EYDGIMQKSQDNVTELYDVSISLSVSFPDVTSNMTIFCILETDKTRLLSSPFSIELEDPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_795 EYDGIMQKSQDNVTELYDVSISLSVSFPDVTSNMTIFCILETDKTRLLSSPFSI------ 180 190 200 210 220 250 260 270 280 290 300 pF1KE1 PPPDHIPWITAVLPTVIICVMVFCLILWKWKKKKRPRNSYKCGTNTMEREESEQTKKREK :::::::::::::::::: NP_795 ------------------------------------------GTNTMEREESEQTKKREK 230 240 310 320 pF1KE1 IHIPERSDETQRVFKSSKTSSCDKSDTCF :::::::::.::::::::::::::::::: NP_795 IHIPERSDEAQRVFKSSKTSSCDKSDTCF 250 260 270 >>NP_001193853 (OMIM: 601020) T-lymphocyte activation an (217 aa) initn: 1435 init1: 1309 opt: 1309 Z-score: 1370.3 bits: 261.3 E(85289): 1.4e-69 Smith-Waterman score: 1309; 99.5% identity (100.0% similar) in 196 aa overlap (134-329:22-217) 110 120 130 140 150 160 pF1KE1 DKGLYQCIIHHKKPTGMIRIHQMNSELSVLANFSQPEIVPISNITENVYINLTCSSIHGY :::::::::::::::::::::::::::::: NP_001 MDPQCTMGLSNILFVMAFLLSANFSQPEIVPISNITENVYINLTCSSIHGY 10 20 30 40 50 170 180 190 200 210 220 pF1KE1 PEPKKMSVLLRTKNSTIEYDGIMQKSQDNVTELYDVSISLSVSFPDVTSNMTIFCILETD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PEPKKMSVLLRTKNSTIEYDGIMQKSQDNVTELYDVSISLSVSFPDVTSNMTIFCILETD 60 70 80 90 100 110 230 240 250 260 270 280 pF1KE1 KTRLLSSPFSIELEDPQPPPDHIPWITAVLPTVIICVMVFCLILWKWKKKKRPRNSYKCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KTRLLSSPFSIELEDPQPPPDHIPWITAVLPTVIICVMVFCLILWKWKKKKRPRNSYKCG 120 130 140 150 160 170 290 300 310 320 pF1KE1 TNTMEREESEQTKKREKIHIPERSDETQRVFKSSKTSSCDKSDTCF ::::::::::::::::::::::::::.::::::::::::::::::: NP_001 TNTMEREESEQTKKREKIHIPERSDEAQRVFKSSKTSSCDKSDTCF 180 190 200 210 >>NP_005182 (OMIM: 112203) T-lymphocyte activation antig (288 aa) initn: 144 init1: 54 opt: 277 Z-score: 297.7 bits: 63.2 E(85289): 7.7e-10 Smith-Waterman score: 277; 25.9% identity (58.0% similar) in 274 aa overlap (12-278:24-277) 10 20 30 40 pF1KE1 MDPQCTMGLSNILFVMAFLLSGAAPLKIQAYFNETADLPCQFANSQNQ .: .. . ::. ... .:.: : : : . . NP_005 MGHTRRQGTSPSKCPYLNFFQLLVLAGLSHFCSGV--IHVTKEVKEVATLSCGH-NVSVE 10 20 30 40 50 50 60 70 80 90 100 pF1KE1 SLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFD-SDSWTLRLHNLQIKDKGL :.. ..:: ....::. .. : .. .: .:: :: ... .. . :. .:.: NP_005 ELAQTRIYWQKEKKMVLT-MMSGDM---NIWPEYKNRTIFDITNNLSIVILALRPSDEGT 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE1 YQCIIHHKKPTGMIRIHQMNSELSVLANFSQPEIVPISNITENVYINLTCSSIHGYPEPK :.:.. . . .. : : . ::: :.: : : . : :. . ::. :.:::. NP_005 YECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIR-RIICSTSGGFPEPH 120 130 140 150 160 170 170 180 190 200 210 220 pF1KE1 KMSVLLRTKNSTIEYDGIMQK-SQDNVTELYDVSISLSVSFPDVTSNMTIFCILETDKTR .: : .:. : ..: ::: :::: :: .:. ..:.: ...:... . : NP_005 -LSWL---ENGE-ELNAINTTVSQDPETELYAVSSKLDF---NMTTNHSFMCLIKYGHLR 180 190 200 210 220 230 240 250 260 270 280 pF1KE1 LLSSPFSIELEDPQPPPDHI-P-WITAVLPT---VIICVMVFCLILWKWKKKKRPRNSYK . .. :. . . ::.. : : ... . .:: ...:. . ..: :: NP_005 V-NQTFNWNTTKQEHFPDNLLPSWAITLISVNGIFVICCLTYCFA---PRCRERRRNERL 230 240 250 260 270 280 290 300 310 320 pF1KE1 CGTNTMEREESEQTKKREKIHIPERSDETQRVFKSSKTSSCDKSDTCF NP_005 RRESVRPV >>XP_016863009 (OMIM: 112203) PREDICTED: T-lymphocyte ac (249 aa) initn: 144 init1: 54 opt: 243 Z-score: 263.3 bits: 56.6 E(85289): 6.3e-08 Smith-Waterman score: 243; 27.5% identity (59.2% similar) in 218 aa overlap (12-227:24-225) 10 20 30 40 pF1KE1 MDPQCTMGLSNILFVMAFLLSGAAPLKIQAYFNETADLPCQFANSQNQ .: .. . ::. ... .:.: : : : . . XP_016 MGHTRRQGTSPSKCPYLNFFQLLVLAGLSHFCSGV--IHVTKEVKEVATLSCGH-NVSVE 10 20 30 40 50 50 60 70 80 90 100 pF1KE1 SLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFD-SDSWTLRLHNLQIKDKGL :.. ..:: ....::. .. : .. .: .:: :: ... .. . :. .:.: XP_016 ELAQTRIYWQKEKKMVLT-MMSGDM---NIWPEYKNRTIFDITNNLSIVILALRPSDEGT 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE1 YQCIIHHKKPTGMIRIHQMNSELSVLANFSQPEIVPISNITENVYINLTCSSIHGYPEPK :.:.. . . .. : : . ::: :.: : : . : :. . ::. :.:::. XP_016 YECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIR-RIICSTSGGFPEPH 120 130 140 150 160 170 170 180 190 200 210 220 pF1KE1 KMSVLLRTKNSTIEYDGIMQK-SQDNVTELYDVSISLSVSFPDVTSNMTIFCILETDKTR .: : .:. : ..: ::: :::: :: .:. ..:.: ...:... . : XP_016 -LSWL---ENGE-ELNAINTTVSQDPETELYAVSSKLDF---NMTTNHSFMCLIKYGHLR 180 190 200 210 220 230 240 250 260 270 280 pF1KE1 LLSSPFSIELEDPQPPPDHIPWITAVLPTVIICVMVFCLILWKWKKKKRPRNSYKCGTNT . XP_016 VNQTFNWNTKVNSGNHLMSPFNLVF 230 240 >>XP_011527816 (OMIM: 605717) PREDICTED: ICOS ligand iso (361 aa) initn: 70 init1: 70 opt: 242 Z-score: 260.0 bits: 56.5 E(85289): 9.6e-08 Smith-Waterman score: 242; 21.6% identity (56.8% similar) in 338 aa overlap (7-325:3-327) 10 20 30 40 50 pF1KE1 MDPQCTMGLSNILFVM-AFLLSGAAPLKIQAYFNETADLPCQFANSQNQSLSELVVFWQD .: ..::.. . : . . ...:. . ..: : ... .:... :.:: XP_011 MRLGSPGLLFLLFSSLRADTQEKEVRAMVGSDVELSCACPEGSRFDLNDVYVYWQT 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 QENLVLNEVYLGKEK-FDSVHSKYMGRTSFDS-----DSWTLRLHNLQIKDKGLYQCIIH .:. .. .. ... ...: :.: .:. .. ...::: :. .:. ..:.. XP_011 SESKTVVTYHIPQNSSLENVDSRYRNRALMSPAGMLRGDFSLRLFNVTPQDEQKFHCLVL 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 HKKPTGMIRIHQMNSELSVLANFSQPEIVPISNITENVYINLTCSSIHGYPEPKKMSVLL .. :. .. ... : : :::: : .: . . ...::.::.:::.:. . . XP_011 -SQSLGFQEVLSVEVTLHVAANFSVP-VVSAPHSPSQDELTFTCTSINGYPRPN-VYWIN 120 130 140 150 160 170 180 190 200 210 220 pF1KE1 RTKNSTIEYDGIMQKSQD--NVTELYDVSISLSVSFPDVTSNMTIFCILET---DKTRLL .: :: . : .:.. :. :::: : .. : ...: : .:. ... . XP_011 KTDNSLL--DQALQNDTVFLNMRGLYDVVSVLRIAR---TPSVNIGCCIENVLLQQNLTV 180 190 200 210 220 230 240 250 260 270 280 pF1KE1 SSPFSIEL-------EDPQPPPDHIPWITAVLPTVIICVMVFCLILWKWKKKKRPRNSYK .: . .. :.: .. ..: ...:..: . : . : . XP_011 GSQTGNDIGERDKITENPVSTGEKNAATWSIL--AVLCLLVVVAVAIGWVCRDRCLQHSY 230 240 250 260 270 280 290 300 310 320 pF1KE1 CGTNTMEREESEQTKKREKIHIPERSDETQRVFKSSKTSSCDKSDTCF :. .. :.: : .:. .. . .: ..::: .::. . XP_011 AGAWAVS-PETELTVSRHGFE--QTTDVLPFILKSSLGASCEPTAFPLPPAAPGPCAHLF 290 300 310 320 330 340 XP_011 IWMLAECTPCSPVWSSIS 350 360 >>XP_011511629 (OMIM: 112203) PREDICTED: T-lymphocyte ac (217 aa) initn: 108 init1: 54 opt: 234 Z-score: 254.8 bits: 54.8 E(85289): 1.9e-07 Smith-Waterman score: 234; 27.7% identity (58.2% similar) in 213 aa overlap (77-278:11-206) 50 60 70 80 90 100 pF1KE1 NQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFD-SDSWTLRLHNLQIKDK .. .: .:: :: ... .. . :. .:. XP_011 MVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDE 10 20 30 40 110 120 130 140 150 160 pF1KE1 GLYQCIIHHKKPTGMIRIHQMNSELSVLANFSQPEI----VPISNITENVYINLTCSSIH : :.:.. . . .. : : . ::: :.: : : .: ::: . . ::. XP_011 GTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRII-----CSTSG 50 60 70 80 90 170 180 190 200 210 220 pF1KE1 GYPEPKKMSVLLRTKNSTIEYDGIMQK-SQDNVTELYDVSISLSVSFPDVTSNMTIFCIL :.:::. .: : .:. : ..: ::: :::: :: .:. ..:.: ...:.. XP_011 GFPEPH-LSWL---ENGE-ELNAINTTVSQDPETELYAVSSKLDF---NMTTNHSFMCLI 100 110 120 130 140 230 240 250 260 270 pF1KE1 ETDKTRLLSSPFSIELEDPQPPPDHI-P-WITAVLPT---VIICVMVFCLILWKWKKKKR . . :. .. :. . . ::.. : : ... . .:: ...:. . ..: XP_011 KYGHLRV-NQTFNWNTTKQEHFPDNLLPSWAITLISVNGIFVICCLTYCF---APRCRER 150 160 170 180 190 200 280 290 300 310 320 pF1KE1 PRNSYKCGTNTMEREESEQTKKREKIHIPERSDETQRVFKSSKTSSCDKSDTCF :: XP_011 RRNERLRRESVRPV 210 >>NP_001316557 (OMIM: 605715) CD276 antigen isoform b pr (316 aa) initn: 89 init1: 65 opt: 233 Z-score: 251.4 bits: 54.8 E(85289): 2.9e-07 Smith-Waterman score: 233; 23.9% identity (52.4% similar) in 330 aa overlap (3-313:8-315) 10 20 30 40 50 pF1KE1 MDPQCTMGLSNILFVMAFLLSGAAPLKIQ-----AYFNETADLPCQFANSQNQSL : . .. : .. : :.:: ... : . : : :.:. . :: NP_001 MLRRRGSPGMGVHVGAALGALWFCLTGALEVQVPEDPVVALVGTDATLCCSFSPEPGFSL 10 20 30 40 50 60 60 70 80 90 100 pF1KE1 SELVVFWQ--DQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSD-----SWTLRLHNLQIK ..: ..:: : ..:: . :... : : .::.. : . .:::. ... NP_001 AQLNLIWQLTDTKQLV-HSFAEGQDQ----GSAYANRTALFPDLLAQGNASLRLQRVRVA 70 80 90 100 110 110 120 130 140 150 160 pF1KE1 DKGLYQCIIHHKKPTGMIRIHQMNSELSVLANFSQPEIV--PISNITENVYINLTCSSIH :.: . :.. . : . :.: : .:.: .. : ... . ...:::: . NP_001 DEGSFTCFVS-IRDFGSAAVS-----LQVAAPYSKPSMTLEPNKDLRPGDTVTITCSSYR 120 130 140 150 160 170 180 190 200 210 220 pF1KE1 GYPEPKKMSVLLRTKNSTIEYDGIMQKSQ-DNVTELYDVSISLSVSFPDVTSNMTIFCIL :::: . .. .. . : . :: : :.:: : : . .: : :.. NP_001 GYPEAE----VFWQDGQGVPLTGNVTTSQMANEQGLFDVHSVLRVVL---GANGTYSCLV 170 180 190 200 210 220 230 240 250 260 270 pF1KE1 ETDKTRLLSSPFSIELEDPQP---PPDHIPWITAVLPTVIICVMVFCLILWKWKKKKRPR . . . .. :. . :: ::. . :.:. : . .: ..: : . :.: :. NP_001 R-NPVLQQDAHGSVTITG-QPMTFPPEAL-WVTVGLSVCLIALLV-ALAFVCWRKIKQSC 230 240 250 260 270 280 290 300 310 320 pF1KE1 NSYKCGTNTMERE-ESEQTKKREKIHIPERSDETQRVFKSSKTSSCDKSDTCF . . :.. .. : :. .: . : . :. :.. NP_001 EEENAGAEDQDGEGEGSKTALQPLKHSDSKEDDGQEIA 280 290 300 310 329 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 22:14:25 2016 done: Sun Nov 6 22:14:26 2016 Total Scan time: 6.580 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]