FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4554, 669 aa 1>>>pF1KE4554 669 - 669 aa - 669 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6342+/-0.00104; mu= 17.3104+/- 0.063 mean_var=61.8967+/-12.662, 0's: 0 Z-trim(103.9): 14 B-trim: 269 in 1/49 Lambda= 0.163020 statistics sampled from 7640 (7644) to 7640 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.594), E-opt: 0.2 (0.235), width: 16 Scan time: 3.350 The best scores are: opt bits E(32554) CCDS9878.2 GALC gene_id:2581|Hs108|chr14 ( 685) 4572 1084.3 0 CCDS55937.1 GALC gene_id:2581|Hs108|chr14 ( 659) 4251 1008.8 0 CCDS55936.1 GALC gene_id:2581|Hs108|chr14 ( 662) 4101 973.5 0 >>CCDS9878.2 GALC gene_id:2581|Hs108|chr14 (685 aa) initn: 4572 init1: 4572 opt: 4572 Z-score: 5803.8 bits: 1084.3 E(32554): 0 Smith-Waterman score: 4572; 99.7% identity (99.9% similar) in 669 aa overlap (1-669:17-685) 10 20 30 40 pF1KE4 MTAAAGSAGRAAVPLLLCALLAPGGAYVLDDSDGLGREFDGIGA :::::::::::::::::::::::::::::::::::::::::::: CCDS98 MAEWLLSASWQRRAKAMTAAAGSAGRAAVPLLLCALLAPGGAYVLDDSDGLGREFDGIGA 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE4 VSGGGATSRLLVNYPEPYRSQILDYLFKPNFGASLHILKVEIGGDGQTTDGTEPSHMHYA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS98 VSGGGATSRLLVNYPEPYRSQILDYLFKPNFGASLHILKVEIGGDGQTTDGTEPSHMHYA 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE4 LDENYFRGYEWWLMKEAKKRNPNITLIGLPWSFPGWLGKGFDWPYVNLQLTAYYVVTWIV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS98 LDENYFRGYEWWLMKEAKKRNPNITLIGLPWSFPGWLGKGFDWPYVNLQLTAYYVVTWIV 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE4 GAKRYHDLDIDYIGIWNERSYNANYIKILRKMLNYQGLQRVKIIASDNLWESISASMLLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS98 GAKRYHDLDIDYIGIWNERSYNANYIKILRKMLNYQGLQRVKIIASDNLWESISASMLLD 190 200 210 220 230 240 230 240 250 260 270 280 pF1KE4 AELFKVVDVIGAHYPGTHSAKDAKLTGKKLWSSEDFSTLNSDMGAGCWGRILNQNYINGY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS98 AELFKVVDVIGAHYPGTHSAKDAKLTGKKLWSSEDFSTLNSDMGAGCWGRILNQNYINGY 250 260 270 280 290 300 290 300 310 320 330 340 pF1KE4 MTSTIAWNLVASYYEQLPYGRCGLMTAQEPWSGHYVVESPVWVSAHTTQFTQPGWYYLKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS98 MTSTIAWNLVASYYEQLPYGRCGLMTAQEPWSGHYVVESPVWVSAHTTQFTQPGWYYLKT 310 320 330 340 350 360 350 360 370 380 390 400 pF1KE4 VGHLEKGGSYVALTDGLGNLTIIIETMSHKHSKCIRPFLPYFNVSQQFATFVLKGSFSEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS98 VGHLEKGGSYVALTDGLGNLTIIIETMSHKHSKCIRPFLPYFNVSQQFATFVLKGSFSEI 370 380 390 400 410 420 410 420 430 440 450 460 pF1KE4 PELQVWYTKLGKTSERFLFKQLDSLWLLDSDGSFTLSLHEDELFTLTTLTTGRKGSYPLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS98 PELQVWYTKLGKTSERFLFKQLDSLWLLDSDGSFTLSLHEDELFTLTTLTTGRKGSYPLP 430 440 450 460 470 480 470 480 490 500 510 520 pF1KE4 PKSQPFPSTYKDDFNVDYPFFSEAPNFADQTGVFEYFTNIEDPGEHHFTLRQVLNQRPIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS98 PKSQPFPSTYKDDFNVDYPFFSEAPNFADQTGVFEYFTNIEDPGEHHFTLRQVLNQRPIT 490 500 510 520 530 540 530 540 550 560 570 580 pF1KE4 WAADASNTISIIGDYNWTNLTTKCDVYIETPDTGGVFIAGRVNKGGILIRSARGIFFWIF ::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::: CCDS98 WAADASNTISIIGDYNWTNLTIKCDVYIETPDTGGVFIAGRVNKGGILIRSARGIFFWIF 550 560 570 580 590 600 590 600 610 620 630 640 pF1KE4 ANGSYRVTGDLAGWIIYALGRVEVTAKKWYTLTLTIKGHFASGMLNDKSLWTDIPVNFPK ::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::: CCDS98 ANGSYRVTGDLAGWIIYALGRVEVTAKKWYTLTLTIKGHFTSGMLNDKSLWTDIPVNFPK 610 620 630 640 650 660 650 660 pF1KE4 NGWAAIGTHSFEFAQFDNFLVEATR ::::::::::::::::::::::::: CCDS98 NGWAAIGTHSFEFAQFDNFLVEATR 670 680 >>CCDS55937.1 GALC gene_id:2581|Hs108|chr14 (659 aa) initn: 4251 init1: 4251 opt: 4251 Z-score: 5396.1 bits: 1008.8 E(32554): 0 Smith-Waterman score: 4251; 99.7% identity (99.8% similar) in 620 aa overlap (50-669:40-659) 20 30 40 50 60 70 pF1KE4 LLAPGGAYVLDDSDGLGREFDGIGAVSGGGATSRLLVNYPEPYRSQILDYLFKPNFGASL :::::::::::::::::::::::::::::: CCDS55 THGPLPLADLGIHLPCVKVLHQVTPEEKPAATSRLLVNYPEPYRSQILDYLFKPNFGASL 10 20 30 40 50 60 80 90 100 110 120 130 pF1KE4 HILKVEIGGDGQTTDGTEPSHMHYALDENYFRGYEWWLMKEAKKRNPNITLIGLPWSFPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 HILKVEIGGDGQTTDGTEPSHMHYALDENYFRGYEWWLMKEAKKRNPNITLIGLPWSFPG 70 80 90 100 110 120 140 150 160 170 180 190 pF1KE4 WLGKGFDWPYVNLQLTAYYVVTWIVGAKRYHDLDIDYIGIWNERSYNANYIKILRKMLNY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 WLGKGFDWPYVNLQLTAYYVVTWIVGAKRYHDLDIDYIGIWNERSYNANYIKILRKMLNY 130 140 150 160 170 180 200 210 220 230 240 250 pF1KE4 QGLQRVKIIASDNLWESISASMLLDAELFKVVDVIGAHYPGTHSAKDAKLTGKKLWSSED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 QGLQRVKIIASDNLWESISASMLLDAELFKVVDVIGAHYPGTHSAKDAKLTGKKLWSSED 190 200 210 220 230 240 260 270 280 290 300 310 pF1KE4 FSTLNSDMGAGCWGRILNQNYINGYMTSTIAWNLVASYYEQLPYGRCGLMTAQEPWSGHY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 FSTLNSDMGAGCWGRILNQNYINGYMTSTIAWNLVASYYEQLPYGRCGLMTAQEPWSGHY 250 260 270 280 290 300 320 330 340 350 360 370 pF1KE4 VVESPVWVSAHTTQFTQPGWYYLKTVGHLEKGGSYVALTDGLGNLTIIIETMSHKHSKCI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 VVESPVWVSAHTTQFTQPGWYYLKTVGHLEKGGSYVALTDGLGNLTIIIETMSHKHSKCI 310 320 330 340 350 360 380 390 400 410 420 430 pF1KE4 RPFLPYFNVSQQFATFVLKGSFSEIPELQVWYTKLGKTSERFLFKQLDSLWLLDSDGSFT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 RPFLPYFNVSQQFATFVLKGSFSEIPELQVWYTKLGKTSERFLFKQLDSLWLLDSDGSFT 370 380 390 400 410 420 440 450 460 470 480 490 pF1KE4 LSLHEDELFTLTTLTTGRKGSYPLPPKSQPFPSTYKDDFNVDYPFFSEAPNFADQTGVFE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 LSLHEDELFTLTTLTTGRKGSYPLPPKSQPFPSTYKDDFNVDYPFFSEAPNFADQTGVFE 430 440 450 460 470 480 500 510 520 530 540 550 pF1KE4 YFTNIEDPGEHHFTLRQVLNQRPITWAADASNTISIIGDYNWTNLTTKCDVYIETPDTGG :::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::: CCDS55 YFTNIEDPGEHHFTLRQVLNQRPITWAADASNTISIIGDYNWTNLTIKCDVYIETPDTGG 490 500 510 520 530 540 560 570 580 590 600 610 pF1KE4 VFIAGRVNKGGILIRSARGIFFWIFANGSYRVTGDLAGWIIYALGRVEVTAKKWYTLTLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 VFIAGRVNKGGILIRSARGIFFWIFANGSYRVTGDLAGWIIYALGRVEVTAKKWYTLTLT 550 560 570 580 590 600 620 630 640 650 660 pF1KE4 IKGHFASGMLNDKSLWTDIPVNFPKNGWAAIGTHSFEFAQFDNFLVEATR :::::.:::::::::::::::::::::::::::::::::::::::::::: CCDS55 IKGHFTSGMLNDKSLWTDIPVNFPKNGWAAIGTHSFEFAQFDNFLVEATR 610 620 630 640 650 >>CCDS55936.1 GALC gene_id:2581|Hs108|chr14 (662 aa) initn: 4408 init1: 4101 opt: 4101 Z-score: 5205.4 bits: 973.5 E(32554): 0 Smith-Waterman score: 4366; 96.3% identity (96.4% similar) in 669 aa overlap (1-669:17-662) 10 20 30 40 pF1KE4 MTAAAGSAGRAAVPLLLCALLAPGGAYVLDDSDGLGREFDGIGA :::::::::::::::::::::::::::::::::::::::::::: CCDS55 MAEWLLSASWQRRAKAMTAAAGSAGRAAVPLLLCALLAPGGAYVLDDSDGLGREFDGIGA 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE4 VSGGGATSRLLVNYPEPYRSQILDYLFKPNFGASLHILKVEIGGDGQTTDGTEPSHMHYA ::::: :::::::::::::::::::::::::::::::: CCDS55 VSGGG-----------------------PNFGASLHILKVEIGGDGQTTDGTEPSHMHYA 70 80 90 110 120 130 140 150 160 pF1KE4 LDENYFRGYEWWLMKEAKKRNPNITLIGLPWSFPGWLGKGFDWPYVNLQLTAYYVVTWIV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 LDENYFRGYEWWLMKEAKKRNPNITLIGLPWSFPGWLGKGFDWPYVNLQLTAYYVVTWIV 100 110 120 130 140 150 170 180 190 200 210 220 pF1KE4 GAKRYHDLDIDYIGIWNERSYNANYIKILRKMLNYQGLQRVKIIASDNLWESISASMLLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 GAKRYHDLDIDYIGIWNERSYNANYIKILRKMLNYQGLQRVKIIASDNLWESISASMLLD 160 170 180 190 200 210 230 240 250 260 270 280 pF1KE4 AELFKVVDVIGAHYPGTHSAKDAKLTGKKLWSSEDFSTLNSDMGAGCWGRILNQNYINGY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 AELFKVVDVIGAHYPGTHSAKDAKLTGKKLWSSEDFSTLNSDMGAGCWGRILNQNYINGY 220 230 240 250 260 270 290 300 310 320 330 340 pF1KE4 MTSTIAWNLVASYYEQLPYGRCGLMTAQEPWSGHYVVESPVWVSAHTTQFTQPGWYYLKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 MTSTIAWNLVASYYEQLPYGRCGLMTAQEPWSGHYVVESPVWVSAHTTQFTQPGWYYLKT 280 290 300 310 320 330 350 360 370 380 390 400 pF1KE4 VGHLEKGGSYVALTDGLGNLTIIIETMSHKHSKCIRPFLPYFNVSQQFATFVLKGSFSEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 VGHLEKGGSYVALTDGLGNLTIIIETMSHKHSKCIRPFLPYFNVSQQFATFVLKGSFSEI 340 350 360 370 380 390 410 420 430 440 450 460 pF1KE4 PELQVWYTKLGKTSERFLFKQLDSLWLLDSDGSFTLSLHEDELFTLTTLTTGRKGSYPLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 PELQVWYTKLGKTSERFLFKQLDSLWLLDSDGSFTLSLHEDELFTLTTLTTGRKGSYPLP 400 410 420 430 440 450 470 480 490 500 510 520 pF1KE4 PKSQPFPSTYKDDFNVDYPFFSEAPNFADQTGVFEYFTNIEDPGEHHFTLRQVLNQRPIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 PKSQPFPSTYKDDFNVDYPFFSEAPNFADQTGVFEYFTNIEDPGEHHFTLRQVLNQRPIT 460 470 480 490 500 510 530 540 550 560 570 580 pF1KE4 WAADASNTISIIGDYNWTNLTTKCDVYIETPDTGGVFIAGRVNKGGILIRSARGIFFWIF ::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::: CCDS55 WAADASNTISIIGDYNWTNLTIKCDVYIETPDTGGVFIAGRVNKGGILIRSARGIFFWIF 520 530 540 550 560 570 590 600 610 620 630 640 pF1KE4 ANGSYRVTGDLAGWIIYALGRVEVTAKKWYTLTLTIKGHFASGMLNDKSLWTDIPVNFPK ::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::: CCDS55 ANGSYRVTGDLAGWIIYALGRVEVTAKKWYTLTLTIKGHFTSGMLNDKSLWTDIPVNFPK 580 590 600 610 620 630 650 660 pF1KE4 NGWAAIGTHSFEFAQFDNFLVEATR ::::::::::::::::::::::::: CCDS55 NGWAAIGTHSFEFAQFDNFLVEATR 640 650 660 669 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 18:36:24 2016 done: Mon Nov 7 18:36:24 2016 Total Scan time: 3.350 Total Display time: 0.040 Function used was FASTA [36.3.4 Apr, 2011]