FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1386, 205 aa 1>>>pF1KE1386 205 - 205 aa - 205 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6618+/-0.000709; mu= 12.6195+/- 0.043 mean_var=80.4819+/-16.116, 0's: 0 Z-trim(111.5): 12 B-trim: 0 in 0/51 Lambda= 0.142963 statistics sampled from 12389 (12401) to 12389 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.381), width: 16 Scan time: 2.340 The best scores are: opt bits E(32554) CCDS4701.1 LTA gene_id:4049|Hs108|chr6 ( 205) 1356 288.4 2e-78 CCDS4702.1 TNF gene_id:7124|Hs108|chr6 ( 233) 305 71.7 4e-13 >>CCDS4701.1 LTA gene_id:4049|Hs108|chr6 (205 aa) initn: 1356 init1: 1356 opt: 1356 Z-score: 1521.4 bits: 288.4 E(32554): 2e-78 Smith-Waterman score: 1356; 99.5% identity (99.5% similar) in 205 aa overlap (1-205:1-205) 10 20 30 40 50 60 pF1KE1 MTPPERLFLPRVRGTTLHLLLLGLLLVLLPGAQGLPGVGLTPSAAQTARQHPKMHLAHST :::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 MTPPERLFLPRVCGTTLHLLLLGLLLVLLPGAQGLPGVGLTPSAAQTARQHPKMHLAHST 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LKPAAHLIGDPSKQNSLLWRANTDRAFLQDGFSLSNNSLLVPTSGIYFVYSQVVFSGKAY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 LKPAAHLIGDPSKQNSLLWRANTDRAFLQDGFSLSNNSLLVPTSGIYFVYSQVVFSGKAY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SPKATSSPLYLAHEVQLFSSQYPFHVPLLSSQKMVYPGLQEPWLHSMYHGAAFQLTQGDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 SPKATSSPLYLAHEVQLFSSQYPFHVPLLSSQKMVYPGLQEPWLHSMYHGAAFQLTQGDQ 130 140 150 160 170 180 190 200 pF1KE1 LSTHTDGIPHLVLSPSTVFFGAFAL ::::::::::::::::::::::::: CCDS47 LSTHTDGIPHLVLSPSTVFFGAFAL 190 200 >>CCDS4702.1 TNF gene_id:7124|Hs108|chr6 (233 aa) initn: 288 init1: 178 opt: 305 Z-score: 349.0 bits: 71.7 E(32554): 4e-13 Smith-Waterman score: 305; 32.4% identity (62.8% similar) in 207 aa overlap (8-205:38-233) 10 20 30 pF1KE1 MTPPERLFLPRVRGTTLHLLL-LGLLLVLLPGAQGLP :: . .::: :: .: :. : . .: CCDS47 RDVELAEEALPKKTGGPQGSRRCLFLSLFSFLIVAGATTLFCLLHFG---VIGPQREEFP 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE1 -GVGLTPSAAQTARQHPKMHLAHSTLKPAAHLIGDPSKQNSLLWRANTDRAFLQDGFSLS ..: ::..:. . . ::.::....:. ...: : :.: .: : CCDS47 RDLSLISPLAQAVRSSSRT----PSDKPVAHVVANPQAEGQLQWLNRRANALLANGVELR 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE1 NNSLLVPTSGIYFVYSQVVFSGKAYSPKATSSPLYLAHEVQLFSSQYPFHVPLLSS---- .:.:.::. :.:..::::.:.:.. : :. . :.: .. .. .: .: :::. CCDS47 DNQLVVPSEGLYLIYSQVLFKGQG-CP---STHVLLTHTISRIAVSYQTKVNLLSAIKSP 130 140 150 160 170 160 170 180 190 200 pF1KE1 -QKMVYPGLQ-EPWLHSMYHGAAFQLTQGDQLSTHTDGIPHLVLSPS-TVFFGAFAL :. . : . .:: . .: :..::: .::.::.. . .: .. : :.:: .:: CCDS47 CQRETPEGAEAKPWYEPIYLGGVFQLEKGDRLSAEINRPDYLDFAESGQVYFGIIAL 180 190 200 210 220 230 205 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 22:18:28 2016 done: Sun Nov 6 22:18:28 2016 Total Scan time: 2.340 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]