Result of FASTA (ccds) for
pFN21AE3593
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3593, 153 aa
1>>>pF1KE3593 153 - 153 aa - 153 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3260+/-0.000553; mu= 12.2852+/- 0.034
mean_var=70.5708+/-14.237, 0's: 0 Z-trim(113.7): 59 B-trim: 2 in 1/52
Lambda= 0.152673
statistics sampled from 14281 (14347) to 14281 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.809), E-opt: 0.2 (0.441), width: 16
Scan time: 1.990
The best scores are: opt bits E(32554)
CCDS7960.1 UBE2L6 gene_id:9246|Hs108|chr11 ( 153) 1057 240.7 2.6e-64
CCDS7961.1 UBE2L6 gene_id:9246|Hs108|chr11 ( 87) 592 138.2 1.1e-33
CCDS13790.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 154) 594 138.8 1.3e-33
CCDS58795.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 212) 566 132.7 1.2e-31
CCDS58796.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 122) 478 113.1 5.3e-26
CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 147) 375 90.5 4.2e-19
CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 ( 147) 368 89.0 1.2e-18
CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 147) 359 87.0 4.8e-18
CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 148) 353 85.7 1.2e-17
CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 147) 351 85.2 1.6e-17
CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 149) 337 82.1 1.4e-16
CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX ( 152) 314 77.1 4.7e-15
CCDS1425.1 UBE2T gene_id:29089|Hs108|chr1 ( 197) 315 77.4 5e-15
CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 118) 312 76.6 5.2e-15
CCDS73139.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 109) 304 74.8 1.7e-14
CCDS75172.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 118) 304 74.8 1.8e-14
CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 ( 152) 301 74.2 3.4e-14
CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12 ( 152) 297 73.3 6.3e-14
CCDS56244.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 160) 293 72.5 1.2e-13
CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 193) 293 72.5 1.4e-13
CCDS2637.1 UBE2E2 gene_id:7325|Hs108|chr3 ( 201) 283 70.3 6.7e-13
CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2 ( 207) 271 67.7 4.3e-12
CCDS12987.1 UBE2M gene_id:9040|Hs108|chr19 ( 183) 270 67.4 4.5e-12
CCDS78500.1 UBE2A gene_id:7319|Hs108|chrX ( 119) 265 66.2 6.9e-12
CCDS2639.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 176) 250 63.0 9.3e-11
CCDS5814.1 UBE2H gene_id:7328|Hs108|chr7 ( 183) 250 63.0 9.6e-11
>>CCDS7960.1 UBE2L6 gene_id:9246|Hs108|chr11 (153 aa)
initn: 1057 init1: 1057 opt: 1057 Z-score: 1268.1 bits: 240.7 E(32554): 2.6e-64
Smith-Waterman score: 1057; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153)
10 20 30 40 50 60
pF1KE3 MMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 MMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 YPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 YPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREP
70 80 90 100 110 120
130 140 150
pF1KE3 LRMDLADLLTQNPELFRKNAEEFTLRFGVDRPS
:::::::::::::::::::::::::::::::::
CCDS79 LRMDLADLLTQNPELFRKNAEEFTLRFGVDRPS
130 140 150
>>CCDS7961.1 UBE2L6 gene_id:9246|Hs108|chr11 (87 aa)
initn: 592 init1: 592 opt: 592 Z-score: 718.2 bits: 138.2 E(32554): 1.1e-33
Smith-Waterman score: 592; 100.0% identity (100.0% similar) in 87 aa overlap (67-153:1-87)
40 50 60 70 80 90
pF1KE3 ALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWK
::::::::::::::::::::::::::::::
CCDS79 MIKFTTKIYHPNVDENGQICLPIISSENWK
10 20 30
100 110 120 130 140 150
pF1KE3 PCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVDRPS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 PCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVDRPS
40 50 60 70 80
>>CCDS13790.1 UBE2L3 gene_id:7332|Hs108|chr22 (154 aa)
initn: 594 init1: 594 opt: 594 Z-score: 716.9 bits: 138.8 E(32554): 1.3e-33
Smith-Waterman score: 594; 55.3% identity (80.3% similar) in 152 aa overlap (1-152:1-152)
10 20 30 40 50 60
pF1KE3 MMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPE
: :: :..::::...: .::.. :.::.:.:..:..::.::: :: ..:.:: :
CCDS13 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 YPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREP
:::::: : : :::::::.::.::.:::.::.::::: ::: ::...: .::: :. ..:
CCDS13 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP
70 80 90 100 110 120
130 140 150
pF1KE3 LRMDLADLLTQNPELFRKNAEEFTLRFGVDRPS
:: :::. ... . : ::::::: ..: ::
CCDS13 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD
130 140 150
>>CCDS58795.1 UBE2L3 gene_id:7332|Hs108|chr22 (212 aa)
initn: 566 init1: 566 opt: 566 Z-score: 681.6 bits: 132.7 E(32554): 1.2e-31
Smith-Waterman score: 566; 54.9% identity (80.6% similar) in 144 aa overlap (9-152:67-210)
10 20 30
pF1KE3 MMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHAL
.:::...: .::.. :.::.:.:..:
CCDS58 RQVPSALAGKDLAQLQAGATLAGYRRAHGPEELEEIRKCGMKNFRNIQVDEANLLTWQGL
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE3 LLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPC
..::.::: :: ..:.:: ::::::: : : :::::::.::.::.:::.::.:::::
CCDS58 IVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPA
100 110 120 130 140 150
100 110 120 130 140 150
pF1KE3 TKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVDRPS
::: ::...: .::: :. ..::: :::. ... . : ::::::: ..: ::
CCDS58 TKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD
160 170 180 190 200 210
>>CCDS58796.1 UBE2L3 gene_id:7332|Hs108|chr22 (122 aa)
initn: 478 init1: 478 opt: 478 Z-score: 580.3 bits: 113.1 E(32554): 5.3e-26
Smith-Waterman score: 478; 58.8% identity (79.8% similar) in 114 aa overlap (39-152:7-120)
10 20 30 40 50 60
pF1KE3 KELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMI
:. :.::: :: ..:.:: ::::::: :
CCDS58 MAASRRLMKDNPPYDKGAFRIEINFPAEYPFKPPKI
10 20 30
70 80 90 100 110 120
pF1KE3 KFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADL
: :::::::.::.::.:::.::.::::: ::: ::...: .::: :. ..::: :::.
CCDS58 TFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEE
40 50 60 70 80 90
130 140 150
pF1KE3 LTQNPELFRKNAEEFTLRFGVDRPS
... . : ::::::: ..: ::
CCDS58 YSKDRKKFCKNAEEFTKKYGEKRPVD
100 110 120
>>CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 (147 aa)
initn: 326 init1: 268 opt: 375 Z-score: 456.5 bits: 90.5 E(32554): 4.2e-19
Smith-Waterman score: 375; 38.9% identity (65.8% similar) in 149 aa overlap (2-149:1-147)
10 20 30 40 50
pF1KE3 MMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPP
:: :. ::: :::. :: . : ... :.: .. : . :. .: : . ::
CCDS72 MALKRIQKELSDLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPT
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 EYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIRE
.:::::: : :::::::::.. ::.::: :. :. :.: . .:: .. :. :: .
CCDS72 DYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQ-WSPALTVSKVLLSICSLLCDPNPDD
60 70 80 90 100 110
120 130 140 150
pF1KE3 PLRMDLADLLTQNPELFRKNAEEFTLRFGVDRPS
:: :.:.. .. : . ..:.:.: ....
CCDS72 PLVPDIAQIYKSDKEKYNRHAREWTQKYAM
120 130 140
>>CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 (147 aa)
initn: 350 init1: 279 opt: 368 Z-score: 448.2 bits: 89.0 E(32554): 1.2e-18
Smith-Waterman score: 368; 38.9% identity (63.8% similar) in 149 aa overlap (2-149:1-147)
10 20 30 40 50
pF1KE3 MMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPP
:: :. ::: :::. :: : ... :.: .. :.. ::. .: : : ::
CCDS54 MALKRIQKELTDLQRDPPAQCSAGPVGD-DLFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 EYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIRE
.:::::: . :::::::::.. ::.::: :. :. :.: . .:: .. :. :: .
CCDS54 DYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQ-WSPALTVSKVLLSICSLLCDPNPDD
60 70 80 90 100 110
120 130 140 150
pF1KE3 PLRMDLADLLTQNPELFRKNAEEFTLRFGVDRPS
:: ..: . : . . :.:.: ....
CCDS54 PLVPEIAHTYKADREKYNRLAREWTQKYAM
120 130 140
>>CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 (147 aa)
initn: 324 init1: 270 opt: 359 Z-score: 437.5 bits: 87.0 E(32554): 4.8e-18
Smith-Waterman score: 359; 37.6% identity (63.8% similar) in 149 aa overlap (2-149:1-147)
10 20 30 40 50
pF1KE3 MMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPP
:: :. :::.:: . :: : ... :.: .. :.. ::. .: : : ::
CCDS43 MALKRIHKELNDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 EYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIRE
.:::::: . :::.:::::.. ::.::: :. :. :.: .:: .. :. :: .
CCDS43 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDD
60 70 80 90 100 110
120 130 140 150
pF1KE3 PLRMDLADLLTQNPELFRKNAEEFTLRFGVDRPS
:: ..: . . : . . :.:.: ....
CCDS43 PLVPEIARIYKTDREKYNRIAREWTQKYAM
120 130 140
>>CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 (148 aa)
initn: 324 init1: 270 opt: 353 Z-score: 430.3 bits: 85.7 E(32554): 1.2e-17
Smith-Waterman score: 353; 36.9% identity (63.1% similar) in 149 aa overlap (2-149:1-147)
10 20 30 40 50
pF1KE3 MMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPP
:: :. ::: :: . :: : ... :.: .. :.. ::. .: : : ::
CCDS36 MALKRINKELSDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 EYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIRE
.:::::: . :::.:::::.. ::.::: :. :. :.: .:: .. :. :: .
CCDS36 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDD
60 70 80 90 100 110
120 130 140 150
pF1KE3 PLRMDLADLLTQNPELFRKNAEEFTLRFGVDRPS
:: ..: . . . . . :.:.: ....
CCDS36 PLVPEIARIYKTDRDKYNRLAREWTEKYAML
120 130 140
>>CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 (147 aa)
initn: 324 init1: 270 opt: 351 Z-score: 428.0 bits: 85.2 E(32554): 1.6e-17
Smith-Waterman score: 351; 36.2% identity (63.1% similar) in 149 aa overlap (2-149:1-147)
10 20 30 40 50
pF1KE3 MMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPP
:: :. ::: :: . :: : ... :.: .. :.. ::. .: : : ::
CCDS36 MALKRINKELSDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 EYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIRE
.:::::: . :::.:::::.. ::.::: :. :. :.: .:: .. :. :: .
CCDS36 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDD
60 70 80 90 100 110
120 130 140 150
pF1KE3 PLRMDLADLLTQNPELFRKNAEEFTLRFGVDRPS
:: ..: . . . . . ..:.: ....
CCDS36 PLVPEIARIYKTDRDKYNRISREWTQKYAM
120 130 140
153 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 22:23:14 2016 done: Sun Nov 6 22:23:14 2016
Total Scan time: 1.990 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]