FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2352, 311 aa 1>>>pF1KE2352 311 - 311 aa - 311 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9376+/-0.000321; mu= 18.4550+/- 0.020 mean_var=76.4998+/-15.878, 0's: 0 Z-trim(115.8): 129 B-trim: 0 in 0/51 Lambda= 0.146637 statistics sampled from 26448 (26589) to 26448 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.312), width: 16 Scan time: 5.980 The best scores are: opt bits E(85289) NP_001307581 (OMIM: 188370) T-cell surface glycopr ( 316) 2145 463.0 3.6e-130 NP_001754 (OMIM: 188370) T-cell surface glycoprote ( 327) 2145 463.0 3.7e-130 NP_001755 (OMIM: 188360) T-cell surface glycoprote ( 333) 1314 287.2 3.1e-77 NP_001756 (OMIM: 188340) T-cell surface glycoprote ( 333) 1267 277.2 3.1e-74 NP_001036048 (OMIM: 188411) T-cell surface glycopr ( 376) 1213 265.9 9.2e-71 NP_112155 (OMIM: 188411) T-cell surface glycoprote ( 388) 1213 265.9 9.4e-71 XP_005245636 (OMIM: 188340) PREDICTED: T-cell surf ( 346) 1152 252.9 6.7e-67 XP_011508427 (OMIM: 188410) PREDICTED: antigen-pre ( 335) 1143 251.0 2.4e-66 NP_001757 (OMIM: 188410) antigen-presenting glycop ( 335) 1143 251.0 2.4e-66 XP_011508436 (OMIM: 188411) PREDICTED: T-cell surf ( 290) 1012 223.2 4.8e-58 NP_001036049 (OMIM: 188411) T-cell surface glycopr ( 290) 1012 223.2 4.8e-58 NP_001172043 (OMIM: 188411) T-cell surface glycopr ( 289) 932 206.3 6e-53 XP_011508429 (OMIM: 188410) PREDICTED: antigen-pre ( 231) 929 205.6 7.9e-53 XP_006711684 (OMIM: 188410) PREDICTED: antigen-pre ( 231) 929 205.6 7.9e-53 XP_005245640 (OMIM: 188410) PREDICTED: antigen-pre ( 231) 929 205.6 7.9e-53 XP_011508421 (OMIM: 188360) PREDICTED: T-cell surf ( 278) 907 201.0 2.3e-51 NP_001036050 (OMIM: 188411) T-cell surface glycopr ( 321) 888 197.0 4.1e-50 XP_011508435 (OMIM: 188411) PREDICTED: T-cell surf ( 333) 888 197.1 4.2e-50 NP_001172044 (OMIM: 188411) T-cell surface glycopr ( 286) 629 142.2 1.2e-33 NP_001172036 (OMIM: 188411) T-cell surface glycopr ( 298) 629 142.2 1.2e-33 XP_016858275 (OMIM: 188360) PREDICTED: T-cell surf ( 220) 616 139.4 6.5e-33 NP_001036051 (OMIM: 188411) T-cell surface glycopr ( 187) 612 138.4 1e-32 NP_001172041 (OMIM: 188411) T-cell surface glycopr ( 199) 612 138.5 1.1e-32 XP_016858274 (OMIM: 188360) PREDICTED: T-cell surf ( 239) 609 137.9 1.9e-32 XP_016858273 (OMIM: 188360) PREDICTED: T-cell surf ( 269) 608 137.7 2.4e-32 NP_001306074 (OMIM: 188410) antigen-presenting gly ( 242) 511 117.2 3.4e-26 NP_001036052 (OMIM: 188411) T-cell surface glycopr ( 101) 411 95.7 4.2e-20 NP_001522 (OMIM: 600764) major histocompatibility ( 341) 393 92.4 1.4e-18 XP_011507765 (OMIM: 600764) PREDICTED: major histo ( 254) 357 84.6 2.3e-16 NP_002107 (OMIM: 142800,608579) HLA class I histoc ( 365) 347 82.6 1.3e-15 NP_001176 (OMIM: 194460) zinc-alpha-2-glycoprotein ( 298) 336 80.2 5.5e-15 NP_002118 (OMIM: 142871,600807) HLA class I histoc ( 338) 330 79.0 1.5e-14 XP_016866305 (OMIM: 142871,600807) PREDICTED: HLA ( 343) 330 79.0 1.5e-14 NP_001229687 (OMIM: 142800,608579) HLA class I his ( 365) 325 78.0 3.2e-14 NP_001129491 (OMIM: 601437) IgG receptor FcRn larg ( 365) 319 76.7 7.8e-14 NP_004098 (OMIM: 601437) IgG receptor FcRn large s ( 365) 319 76.7 7.8e-14 NP_005507 (OMIM: 143010) HLA class I histocompatib ( 358) 316 76.1 1.2e-13 XP_016866298 (OMIM: 143010) PREDICTED: HLA class I ( 359) 316 76.1 1.2e-13 XP_016866296 (OMIM: 143010) PREDICTED: HLA class I ( 399) 316 76.1 1.3e-13 XP_016866297 (OMIM: 143010) PREDICTED: HLA class I ( 399) 316 76.1 1.3e-13 NP_002108 (OMIM: 142840,177900,609423) HLA class I ( 366) 310 74.8 2.9e-13 NP_001229971 (OMIM: 142840,177900,609423) HLA clas ( 366) 308 74.4 3.9e-13 NP_001172037 (OMIM: 188411) T-cell surface glycopr ( 231) 304 73.4 5e-13 NP_620578 (OMIM: 104300,176100,176200,235200,61263 ( 325) 304 73.5 6.4e-13 NP_001287678 (OMIM: 104300,176100,176200,235200,61 ( 337) 304 73.5 6.6e-13 XP_011512845 (OMIM: 104300,176100,176200,235200,61 ( 348) 304 73.5 6.8e-13 NP_000401 (OMIM: 104300,176100,176200,235200,61263 ( 348) 304 73.5 6.8e-13 XP_011512866 (OMIM: 143110) PREDICTED: HLA class I ( 343) 299 72.5 1.4e-12 NP_061823 (OMIM: 143110) HLA class I histocompatib ( 346) 299 72.5 1.4e-12 XP_016866302 (OMIM: 143110) PREDICTED: HLA class I ( 388) 299 72.5 1.5e-12 >>NP_001307581 (OMIM: 188370) T-cell surface glycoprotei (316 aa) initn: 2145 init1: 2145 opt: 2145 Z-score: 2457.9 bits: 463.0 E(85289): 3.6e-130 Smith-Waterman score: 2145; 99.3% identity (99.3% similar) in 307 aa overlap (5-311:10-316) 10 20 30 40 50 pF1KE2 MWNWLKEPLSFHVIWIASFYNHSWKQNLVSGWLSDLQTHTWDSNSSTIVFLWPWS ::::::::: ::::::::::::::::::::::::::::::::::::: ::: NP_001 MFAFGGATGLKEPLSFHVTWIASFYNHSWKQNLVSGWLSDLQTHTWDSNSSTIVFLCPWS 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE2 RGNFSNEEWKELETLFRIRTIRSFEGIRRYAHELQFEYPFEIQVTGGCELHSGKVSGSFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RGNFSNEEWKELETLFRIRTIRSFEGIRRYAHELQFEYPFEIQVTGGCELHSGKVSGSFL 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE2 QLAYQGSDFVSFQNNSWLPYPVAGNMAKHFCKVLNQNQHENDITHNLLSDTCPRFILGLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QLAYQGSDFVSFQNNSWLPYPVAGNMAKHFCKVLNQNQHENDITHNLLSDTCPRFILGLL 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE2 DAGKAHLQRQVKPEAWLSHGPSPGPGHLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQRGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DAGKAHLQRQVKPEAWLSHGPSPGPGHLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQRGD 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE2 ILPSADGTWYLRATLEVAAGEAADLSCRVKHSSLEGQDIVLYWEHHSSVGFIILAVIVPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ILPSADGTWYLRATLEVAAGEAADLSCRVKHSSLEGQDIVLYWEHHSSVGFIILAVIVPL 250 260 270 280 290 300 300 310 pF1KE2 LLLIGLALWFRKRCFC :::::::::::::::: NP_001 LLLIGLALWFRKRCFC 310 >>NP_001754 (OMIM: 188370) T-cell surface glycoprotein C (327 aa) initn: 2145 init1: 2145 opt: 2145 Z-score: 2457.7 bits: 463.0 E(85289): 3.7e-130 Smith-Waterman score: 2145; 99.3% identity (99.3% similar) in 307 aa overlap (5-311:21-327) 10 20 30 40 pF1KE2 MWNWLKEPLSFHVIWIASFYNHSWKQNLVSGWLSDLQTHTWDSN ::::::::: :::::::::::::::::::::::::::::: NP_001 MLFLLLPLLAVLPGDGNADGLKEPLSFHVTWIASFYNHSWKQNLVSGWLSDLQTHTWDSN 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE2 SSTIVFLWPWSRGNFSNEEWKELETLFRIRTIRSFEGIRRYAHELQFEYPFEIQVTGGCE ::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SSTIVFLCPWSRGNFSNEEWKELETLFRIRTIRSFEGIRRYAHELQFEYPFEIQVTGGCE 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE2 LHSGKVSGSFLQLAYQGSDFVSFQNNSWLPYPVAGNMAKHFCKVLNQNQHENDITHNLLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LHSGKVSGSFLQLAYQGSDFVSFQNNSWLPYPVAGNMAKHFCKVLNQNQHENDITHNLLS 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE2 DTCPRFILGLLDAGKAHLQRQVKPEAWLSHGPSPGPGHLQLVCHVSGFYPKPVWVMWMRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DTCPRFILGLLDAGKAHLQRQVKPEAWLSHGPSPGPGHLQLVCHVSGFYPKPVWVMWMRG 190 200 210 220 230 240 230 240 250 260 270 280 pF1KE2 EQEQQGTQRGDILPSADGTWYLRATLEVAAGEAADLSCRVKHSSLEGQDIVLYWEHHSSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EQEQQGTQRGDILPSADGTWYLRATLEVAAGEAADLSCRVKHSSLEGQDIVLYWEHHSSV 250 260 270 280 290 300 290 300 310 pF1KE2 GFIILAVIVPLLLLIGLALWFRKRCFC ::::::::::::::::::::::::::: NP_001 GFIILAVIVPLLLLIGLALWFRKRCFC 310 320 >>NP_001755 (OMIM: 188360) T-cell surface glycoprotein C (333 aa) initn: 1338 init1: 1270 opt: 1314 Z-score: 1507.5 bits: 287.2 E(85289): 3.1e-77 Smith-Waterman score: 1314; 62.6% identity (80.8% similar) in 302 aa overlap (8-308:25-326) 10 20 30 40 pF1KE2 MWNWLKEPLSFHVIWIASFYNHSWKQNLVSGWLSDLQTHTWDS : ::::: .:: : .: :. ::::.::: : ::: NP_001 MLLLPFQLLAVLFPGGNSEHAFQGPTSFHVIQTSSFTNSTWAQTQGSGWLDDLQIHGWDS 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE2 NSSTIVFLWPWSRGNFSNEEWKELETLFRIRTIRSFEGIRRYAHELQFEYPFEIQVTGGC .:.: .:: :::.::::..: ::: .::. . . .. .: ..:..:::::: .:: NP_001 DSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYPFEIQGIAGC 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE2 ELHSGKVSGSFLQLAYQGSDFVSFQNNSWLPYPVAGNMAKHFCKVLNQNQHENDITHNLL ::::: . :::. : : ::.: .: : .: : .:. :..:: .. : : . .. :: NP_001 ELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALIIQYQGIMETVRILL 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE2 SDTCPRFILGLLDAGKAHLQRQVKPEAWLSHGPSPGPGHLQLVCHVSGFYPKPVWVMWMR .::::..::.:.:::: :::::::::::: :::::::.::::::::::::::::::::: NP_001 YETCPRYLLGVLNAGKADLQRQVKPEAWLSSGPSPGPGRLQLVCHVSGFYPKPVWVMWMR 190 200 210 220 230 240 230 240 250 260 270 280 pF1KE2 GEQEQQGTQRGDILPSADGTWYLRATLEVAAGEAADLSCRVKHSSLEGQDIVLYWEHHSS ::::::::: :::::.:. ::::::::.:: :::: :::::::::::::::.:::.. .: NP_001 GEQEQQGTQLGDILPNANWTWYLRATLDVADGEAAGLSCRVKHSSLEGQDIILYWRNPTS 250 260 270 280 290 300 290 300 310 pF1KE2 VGFIILAVIVP-LLLLIGLALWFRKRCFC .: :.::.::: ::::. ::::. .: NP_001 IGSIVLAIIVPSLLLLLCLALWYMRRRSYQNIP 310 320 330 >>NP_001756 (OMIM: 188340) T-cell surface glycoprotein C (333 aa) initn: 1277 init1: 748 opt: 1267 Z-score: 1453.8 bits: 277.2 E(85289): 3.1e-74 Smith-Waterman score: 1267; 59.2% identity (82.0% similar) in 306 aa overlap (6-309:23-327) 10 20 30 40 pF1KE2 MWNWLKEPLSFHVIWIASFYNHSWKQNLVSGWLSDLQTHTWDS .: .::::: : :: :.:: .. ::::..:::: ::: NP_001 MLFLQFLLLALLLPGGDNADASQEHVSFHVIQIFSFVNQSWARGQGSGWLDELQTHGWDS 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE2 NSSTIVFLWPWSRGNFSNEEWKELETLFRIRTIRSFEGIRRYAHELQFEYPFEIQVTGGC .:.::.:: ::.::::::: ..:: :::. . . :. .: . .::::.:: .:: NP_001 ESGTIIFLHNWSKGNFSNEELSDLELLFRFYLFGLTREIQDHASQDYSKYPFEVQVKAGC 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE2 ELHSGKVSGSFLQLAYQGSDFVSFQNNSWLPYPVAGNMAKHFCKVLNQNQHEN--DITHN :::::: .:.:.:..: :..::::..:.: : :..:. :..::. :.:. . ..: NP_001 ELHSGKSPEGFFQVAFNGLDLLSFQNTTWVPSPGCGSLAQSVCHLLNH-QYEGVTETVYN 130 140 150 160 170 170 180 190 200 210 220 pF1KE2 LLSDTCPRFILGLLDAGKAHLQRQVKPEAWLSHGPSPGPGHLQLVCHVSGFYPKPVWVMW :. .:::::.:::::::: ...:::.:::::: :: : :.: ::::.:::::::::: : NP_001 LIRSTCPRFLLGLLDAGKMYVHRQVRPEAWLSSRPSLGSGQLLLVCHASGFYPKPVWVTW 180 190 200 210 220 230 230 240 250 260 270 280 pF1KE2 MRGEQEQQGTQRGDILPSADGTWYLRATLEVAAGEAADLSCRVKHSSLEGQDIVLYWEHH ::.:::: ::..:::::.:::::::.. ::::. : : :::::.:::: ::::.::: :: NP_001 MRNEQEQLGTKHGDILPNADGTWYLQVILEVASEEPAGLSCRVRHSSLGGQDIILYWGHH 240 250 260 270 280 290 290 300 310 pF1KE2 SSVGFIILAVIVPLLLLIGLALWFRKRCFC :...: :.:::::..:: :.:::.:.: NP_001 FSMNWIALVVIVPLVILIVLVLWFKKHCSYQDIL 300 310 320 330 >>NP_001036048 (OMIM: 188411) T-cell surface glycoprotei (376 aa) initn: 1210 init1: 854 opt: 1213 Z-score: 1391.4 bits: 265.9 E(85289): 9.2e-71 Smith-Waterman score: 1213; 58.6% identity (82.7% similar) in 295 aa overlap (6-299:32-323) 10 20 30 pF1KE2 MWNWLKEPLSFHVIWIASFYNHSWKQNLVSGWLSD .: :::... .:: :::: .. ::::.: NP_001 LLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLGD 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE2 LQTHTWDSNSSTIVFLWPWSRGNFSNEEWKELETLFRIRTIRSFEGIRRYAHELQFEYPF :::: ::. .:: :: :::.::::..: :.:..::.. .. .. : ..:.:::: NP_001 LQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYPF 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE2 EIQVTGGCELHSGKVSGSFLQLAYQGSDFVSFQNNSWLPYPVAGNMAKHFCKVLNQNQHE :::. .::.... .. ::..:::::::.:::. :: : : :: :...:::::. NP_001 EIQILAGCRMNAPQI---FLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDI 130 140 150 160 170 160 170 180 190 200 210 pF1KE2 NDITHNLLSDTCPRFILGLLDAGKAHLQRQVKPEAWLSHGPSPGPGHLQLVCHVSGFYPK ..: ..::. :::::. ::..::...:.:.:::::::: :::::::.::::::::::::: NP_001 KEILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPK 180 190 200 210 220 230 220 230 240 250 260 270 pF1KE2 PVWVMWMRGEQEQQGTQRGDILPSADGTWYLRATLEVAAGEAADLSCRVKHSSLEGQDIV :::::::::::::.::::::.::.:: ::::::::.::::::: :::::::::: :.:.. NP_001 PVWVMWMRGEQEQRGTQRGDVLPNADETWYLRATLDVAAGEAAGLSCRVKHSSLGGHDLI 240 250 260 270 280 290 280 290 300 310 pF1KE2 LYWEHHSSVGFII-LAVIVPLLLLIGLALWFRKRCFC ..: .: ..: :.::: :..:. NP_001 IHWGGYSIFLILICLTVIVTLVILVVVDSRLKKQSPVFLMGANTQDTKNSRHQFCLAQVS 300 310 320 330 340 350 >>NP_112155 (OMIM: 188411) T-cell surface glycoprotein C (388 aa) initn: 1210 init1: 854 opt: 1213 Z-score: 1391.2 bits: 265.9 E(85289): 9.4e-71 Smith-Waterman score: 1213; 58.6% identity (82.7% similar) in 295 aa overlap (6-299:32-323) 10 20 30 pF1KE2 MWNWLKEPLSFHVIWIASFYNHSWKQNLVSGWLSD .: :::... .:: :::: .. ::::.: NP_112 LLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLGD 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE2 LQTHTWDSNSSTIVFLWPWSRGNFSNEEWKELETLFRIRTIRSFEGIRRYAHELQFEYPF :::: ::. .:: :: :::.::::..: :.:..::.. .. .. : ..:.:::: NP_112 LQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYPF 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE2 EIQVTGGCELHSGKVSGSFLQLAYQGSDFVSFQNNSWLPYPVAGNMAKHFCKVLNQNQHE :::. .::.... .. ::..:::::::.:::. :: : : :: :...:::::. NP_112 EIQILAGCRMNAPQI---FLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDI 130 140 150 160 170 160 170 180 190 200 210 pF1KE2 NDITHNLLSDTCPRFILGLLDAGKAHLQRQVKPEAWLSHGPSPGPGHLQLVCHVSGFYPK ..: ..::. :::::. ::..::...:.:.:::::::: :::::::.::::::::::::: NP_112 KEILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPK 180 190 200 210 220 230 220 230 240 250 260 270 pF1KE2 PVWVMWMRGEQEQQGTQRGDILPSADGTWYLRATLEVAAGEAADLSCRVKHSSLEGQDIV :::::::::::::.::::::.::.:: ::::::::.::::::: :::::::::: :.:.. NP_112 PVWVMWMRGEQEQRGTQRGDVLPNADETWYLRATLDVAAGEAAGLSCRVKHSSLGGHDLI 240 250 260 270 280 290 280 290 300 310 pF1KE2 LYWEHHSSVGFII-LAVIVPLLLLIGLALWFRKRCFC ..: .: ..: :.::: :..:. NP_112 IHWGGYSIFLILICLTVIVTLVILVVVDSRLKKQSSNKNILSPHTPSPVFLMGANTQDTK 300 310 320 330 340 350 >>XP_005245636 (OMIM: 188340) PREDICTED: T-cell surface (346 aa) initn: 1162 init1: 633 opt: 1152 Z-score: 1322.1 bits: 252.9 E(85289): 6.7e-67 Smith-Waterman score: 1152; 59.2% identity (81.2% similar) in 277 aa overlap (6-280:23-298) 10 20 30 40 pF1KE2 MWNWLKEPLSFHVIWIASFYNHSWKQNLVSGWLSDLQTHTWDS .: .::::: : :: :.:: .. ::::..:::: ::: XP_005 MLFLQFLLLALLLPGGDNADASQEHVSFHVIQIFSFVNQSWARGQGSGWLDELQTHGWDS 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE2 NSSTIVFLWPWSRGNFSNEEWKELETLFRIRTIRSFEGIRRYAHELQFEYPFEIQVTGGC .:.::.:: ::.::::::: ..:: :::. . . :. .: . .::::.:: .:: XP_005 ESGTIIFLHNWSKGNFSNEELSDLELLFRFYLFGLTREIQDHASQDYSKYPFEVQVKAGC 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE2 ELHSGKVSGSFLQLAYQGSDFVSFQNNSWLPYPVAGNMAKHFCKVLNQNQHEN--DITHN :::::: .:.:.:..: :..::::..:.: : :..:. :..::. :.:. . ..: XP_005 ELHSGKSPEGFFQVAFNGLDLLSFQNTTWVPSPGCGSLAQSVCHLLNH-QYEGVTETVYN 130 140 150 160 170 170 180 190 200 210 220 pF1KE2 LLSDTCPRFILGLLDAGKAHLQRQVKPEAWLSHGPSPGPGHLQLVCHVSGFYPKPVWVMW :. .:::::.:::::::: ...:::.:::::: :: : :.: ::::.:::::::::: : XP_005 LIRSTCPRFLLGLLDAGKMYVHRQVRPEAWLSSRPSLGSGQLLLVCHASGFYPKPVWVTW 180 190 200 210 220 230 230 240 250 260 270 280 pF1KE2 MRGEQEQQGTQRGDILPSADGTWYLRATLEVAAGEAADLSCRVKHSSLEGQDIVLYWEHH ::.:::: ::..:::::.:::::::.. ::::. : : :::::.:::: ::::.::: : XP_005 MRNEQEQLGTKHGDILPNADGTWYLQVILEVASEEPAGLSCRVRHSSLGGQDIILYWAHI 240 250 260 270 280 290 290 300 310 pF1KE2 SSVGFIILAVIVPLLLLIGLALWFRKRCFC XP_005 RTSCETLPPDSPIVLRTQQPRSLVQYSDAIPSTLHLNCFSFCIINIC 300 310 320 330 340 >>XP_011508427 (OMIM: 188410) PREDICTED: antigen-present (335 aa) initn: 1097 init1: 1097 opt: 1143 Z-score: 1312.0 bits: 251.0 E(85289): 2.4e-66 Smith-Waterman score: 1143; 52.1% identity (80.5% similar) in 313 aa overlap (2-308:16-328) 10 20 30 40 pF1KE2 MWNWLKEP---LSFHVIWIASFYNHSWKQNLVSGWLSDLQTHTWDS :. . : . .. . :.:: : :: .. .::..::::.:.. XP_011 MGCLLFLLLWALLQAWGSAEVPQRLFPLRCLQISSFANSSWTRTDGLAWLGELQTHSWSN 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE2 NSSTIVFLWPWSRGNFSNEEWKELETLFRIRTIRSFEGIRRYAHELQFEYPFEIQVTGGC .:.:. : :::.:.::...:. :. .::. . ....:. :.. ::.:.::..:: XP_011 DSDTVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGC 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE2 ELHSGKVSGSFLQLAYQGSDFVSFQNNSWLPYPVAGNMAKHFCKVLNQNQHENDITHNLL :.: :..:..:...:.::.:..:::..:: : : .. .::::.. . .. :: XP_011 EVHPGNASNNFFHVAFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLL 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE2 SDTCPRFILGLLDAGKAHLQRQVKPEAWLSHGPSPGPGHLQLVCHVSGFYPKPVWVMWMR . :::.:. :::..::..:..::::.::::.:::::::.: ::::::::::::::: ::: XP_011 NGTCPQFVSGLLESGKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMR 190 200 210 220 230 240 230 240 250 260 270 280 pF1KE2 GEQEQQGTQRGDILPSADGTWYLRATLEVAAGEAADLSCRVKHSSLEGQDIVLYWE-HHS ::::::::: :::::.:: ::::::::.:.::::: ::::::::::::::::::: .. XP_011 GEQEQQGTQPGDILPNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGGSYT 250 260 270 280 290 300 290 300 310 pF1KE2 SVGFIILAVIVPLL--LLIGLALWFRKRCFC :.:.: :::.. :: :..:.. :... XP_011 SMGLIALAVLACLLFLLIVGFTSRFKRQTSYQGVL 310 320 330 >>NP_001757 (OMIM: 188410) antigen-presenting glycoprote (335 aa) initn: 1097 init1: 1097 opt: 1143 Z-score: 1312.0 bits: 251.0 E(85289): 2.4e-66 Smith-Waterman score: 1143; 52.1% identity (80.5% similar) in 313 aa overlap (2-308:16-328) 10 20 30 40 pF1KE2 MWNWLKEP---LSFHVIWIASFYNHSWKQNLVSGWLSDLQTHTWDS :. . : . .. . :.:: : :: .. .::..::::.:.. NP_001 MGCLLFLLLWALLQAWGSAEVPQRLFPLRCLQISSFANSSWTRTDGLAWLGELQTHSWSN 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE2 NSSTIVFLWPWSRGNFSNEEWKELETLFRIRTIRSFEGIRRYAHELQFEYPFEIQVTGGC .:.:. : :::.:.::...:. :. .::. . ....:. :.. ::.:.::..:: NP_001 DSDTVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGC 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE2 ELHSGKVSGSFLQLAYQGSDFVSFQNNSWLPYPVAGNMAKHFCKVLNQNQHENDITHNLL :.: :..:..:...:.::.:..:::..:: : : .. .::::.. . .. :: NP_001 EVHPGNASNNFFHVAFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLL 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE2 SDTCPRFILGLLDAGKAHLQRQVKPEAWLSHGPSPGPGHLQLVCHVSGFYPKPVWVMWMR . :::.:. :::..::..:..::::.::::.:::::::.: ::::::::::::::: ::: NP_001 NGTCPQFVSGLLESGKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMR 190 200 210 220 230 240 230 240 250 260 270 280 pF1KE2 GEQEQQGTQRGDILPSADGTWYLRATLEVAAGEAADLSCRVKHSSLEGQDIVLYWE-HHS ::::::::: :::::.:: ::::::::.:.::::: ::::::::::::::::::: .. NP_001 GEQEQQGTQPGDILPNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGGSYT 250 260 270 280 290 300 290 300 310 pF1KE2 SVGFIILAVIVPLL--LLIGLALWFRKRCFC :.:.: :::.. :: :..:.. :... NP_001 SMGLIALAVLACLLFLLIVGFTSRFKRQTSYQGVL 310 320 330 >>XP_011508436 (OMIM: 188411) PREDICTED: T-cell surface (290 aa) initn: 1034 init1: 678 opt: 1012 Z-score: 1163.0 bits: 223.2 E(85289): 4.8e-58 Smith-Waterman score: 1012; 57.7% identity (82.6% similar) in 241 aa overlap (6-246:32-269) 10 20 30 pF1KE2 MWNWLKEPLSFHVIWIASFYNHSWKQNLVSGWLSD .: :::... .:: :::: .. ::::.: XP_011 LLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLGD 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE2 LQTHTWDSNSSTIVFLWPWSRGNFSNEEWKELETLFRIRTIRSFEGIRRYAHELQFEYPF :::: ::. .:: :: :::.::::..: :.:..::.. .. .. : ..:.:::: XP_011 LQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYPF 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE2 EIQVTGGCELHSGKVSGSFLQLAYQGSDFVSFQNNSWLPYPVAGNMAKHFCKVLNQNQHE :::. .::.... .. ::..:::::::.:::. :: : : :: :...:::::. XP_011 EIQILAGCRMNAPQI---FLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLNRYLDI 130 140 150 160 170 160 170 180 190 200 210 pF1KE2 NDITHNLLSDTCPRFILGLLDAGKAHLQRQVKPEAWLSHGPSPGPGHLQLVCHVSGFYPK ..: ..::. :::::. ::..::...:.:.:::::::: :::::::.::::::::::::: XP_011 KEILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPK 180 190 200 210 220 230 220 230 240 250 260 270 pF1KE2 PVWVMWMRGEQEQQGTQRGDILPSADGTWYLRATLEVAAGEAADLSCRVKHSSLEGQDIV :::::::::::::.::::::.::.:: ::.. XP_011 PVWVMWMRGEQEQRGTQRGDVLPNADETWWIFHLSHPDLFDCDSYPGHIGCS 240 250 260 270 280 290 280 290 300 310 pF1KE2 LYWEHHSSVGFIILAVIVPLLLLIGLALWFRKRCFC 311 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 22:26:23 2016 done: Sun Nov 6 22:26:24 2016 Total Scan time: 5.980 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]