FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3930, 401 aa
  1>>>pF1KE3930 401 - 401 aa - 401 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8400+/-0.000794; mu= 3.2869+/- 0.048
 mean_var=223.4785+/-45.468, 0's: 0 Z-trim(116.3): 16  B-trim: 257 in 1/52
 Lambda= 0.085794
 statistics sampled from 16886 (16901) to 16886 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.814), E-opt: 0.2 (0.519), width:  16
 Scan time:  2.650

The best scores are:                                      opt bits E(32554)
CCDS11009.1 RILP gene_id:83547|Hs108|chr17         ( 401) 2665 342.0   6e-94


>>CCDS11009.1 RILP gene_id:83547|Hs108|chr17              (401 aa)
 initn: 2665 init1: 2665 opt: 2665  Z-score: 1800.2  bits: 342.0 E(32554): 6e-94
Smith-Waterman score: 2665; 100.0% identity (100.0% similar) in 401 aa overlap (1-401:1-401)

               10        20        30        40        50        60
pF1KE3 MEPRRAAPGVPGWGSREAAGSASAAELVYHLAGALGTELQDLARRFGPEAAAGLVPLVVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MEPRRAAPGVPGWGSREAAGSASAAELVYHLAGALGTELQDLARRFGPEAAAGLVPLVVR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 ALELLEQAAVGPAPDSLQVSAQPAEQELRRLREENERLRRELRAGPQEERALLRQLKEVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ALELLEQAAVGPAPDSLQVSAQPAEQELRRLREENERLRRELRAGPQEERALLRQLKEVT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 DRQRDELRAHNRDLRQRGQETEALQEQLQRLLLVNAELRHKLAAMQTQLRAAQDRERERQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DRQRDELRAHNRDLRQRGQETEALQEQLQRLLLVNAELRHKLAAMQTQLRAAQDRERERQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 QPGEAATPQAKERARGQAGRPGHQHGQEPEWATAGAGAPGNPEDPAEAAQQLGRPSEAGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QPGEAATPQAKERARGQAGRPGHQHGQEPEWATAGAGAPGNPEDPAEAAQQLGRPSEAGQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 CRFSREEFEQILQERNELKAKVFLLKEELAYFQRELLTDHRVPGLLLEAMKVAVRKQRKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 CRFSREEFEQILQERNELKAKVFLLKEELAYFQRELLTDHRVPGLLLEAMKVAVRKQRKK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 IKAKMLGTPEEAESSEDEAGPWILLSDDKGDHPPPPESKIQSFFGLWYRGKAESSEDETS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IKAKMLGTPEEAESSEDEAGPWILLSDDKGDHPPPPESKIQSFFGLWYRGKAESSEDETS
              310       320       330       340       350       360

              370       380       390       400 
pF1KE3 SPAPSKLGGEEEAQPQSPAPDPPCSALHEHLCLGASAAPEA
       :::::::::::::::::::::::::::::::::::::::::
CCDS11 SPAPSKLGGEEEAQPQSPAPDPPCSALHEHLCLGASAAPEA
              370       380       390       400 




401 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 08:50:24 2016 done: Sun Nov  6 08:50:24 2016
 Total Scan time:  2.650 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]