FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1121, 366 aa 1>>>pF1KE1121 366 - 366 aa - 366 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7356+/-0.00072; mu= 14.3041+/- 0.043 mean_var=70.2093+/-14.143, 0's: 0 Z-trim(109.3): 30 B-trim: 467 in 1/52 Lambda= 0.153065 statistics sampled from 10732 (10759) to 10732 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.33), width: 16 Scan time: 3.000 The best scores are: opt bits E(32554) CCDS1548.1 LEFTY1 gene_id:10637|Hs108|chr1 ( 366) 2517 564.6 4.6e-161 CCDS1549.1 LEFTY2 gene_id:7044|Hs108|chr1 ( 366) 2409 540.8 7e-154 CCDS53479.1 LEFTY2 gene_id:7044|Hs108|chr1 ( 332) 1631 369.0 3.3e-102 >>CCDS1548.1 LEFTY1 gene_id:10637|Hs108|chr1 (366 aa) initn: 2517 init1: 2517 opt: 2517 Z-score: 3005.1 bits: 564.6 E(32554): 4.6e-161 Smith-Waterman score: 2517; 100.0% identity (100.0% similar) in 366 aa overlap (1-366:1-366) 10 20 30 40 50 60 pF1KE1 MQPLWLCWALWVLPLASPGAALTGEQLLGSLLRQLQLKEVPTLDRADMEELVIPTHVRAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 MQPLWLCWALWVLPLASPGAALTGEQLLGSLLRQLQLKEVPTLDRADMEELVIPTHVRAQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 YVALLQRSHGDRSRGKRFSQSFREVAGRFLALEASTHLLVFGMEQRLPPNSELVQAVLRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 YVALLQRSHGDRSRGKRFSQSFREVAGRFLALEASTHLLVFGMEQRLPPNSELVQAVLRL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 FQEPVPKAALHRHGRLSPRSARARVTVEWLRVRDDGSNRTSLIDSRLVSVHESGWKAFDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 FQEPVPKAALHRHGRLSPRSARARVTVEWLRVRDDGSNRTSLIDSRLVSVHESGWKAFDV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 TEAVNFWQQLSRPRQPLLLQVSVQREHLGPLASGAHKLVRFASQGAPAGLGEPQLELHTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 TEAVNFWQQLSRPRQPLLLQVSVQREHLGPLASGAHKLVRFASQGAPAGLGEPQLELHTL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 DLGDYGAQGDCDPEAPMTEGTRCCRQEMYIDLQGMKWAENWVLEPPGFLAYECVGTCRQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 DLGDYGAQGDCDPEAPMTEGTRCCRQEMYIDLQGMKWAENWVLEPPGFLAYECVGTCRQP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 PEALAFKWPFLGPRQCIASETDSLPMIVSIKEGGRTRPQVVSLPNMRVQKCSCASDGALV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 PEALAFKWPFLGPRQCIASETDSLPMIVSIKEGGRTRPQVVSLPNMRVQKCSCASDGALV 310 320 330 340 350 360 pF1KE1 PRRLQP :::::: CCDS15 PRRLQP >>CCDS1549.1 LEFTY2 gene_id:7044|Hs108|chr1 (366 aa) initn: 2409 init1: 2409 opt: 2409 Z-score: 2876.2 bits: 540.8 E(32554): 7e-154 Smith-Waterman score: 2409; 95.6% identity (98.6% similar) in 366 aa overlap (1-366:1-366) 10 20 30 40 50 60 pF1KE1 MQPLWLCWALWVLPLASPGAALTGEQLLGSLLRQLQLKEVPTLDRADMEELVIPTHVRAQ : ::::::::::::::.:::::: :::::::::::::.:::.:::::::.::::.::::: CCDS15 MWPLWLCWALWVLPLAGPGAALTEEQLLGSLLRQLQLSEVPVLDRADMEKLVIPAHVRAQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 YVALLQRSHGDRSRGKRFSQSFREVAGRFLALEASTHLLVFGMEQRLPPNSELVQAVLRL ::.::.::::::::::::::::::::::::: :::::::::::::::::::::::::::: CCDS15 YVVLLRRSHGDRSRGKRFSQSFREVAGRFLASEASTHLLVFGMEQRLPPNSELVQAVLRL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 FQEPVPKAALHRHGRLSPRSARARVTVEWLRVRDDGSNRTSLIDSRLVSVHESGWKAFDV :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: CCDS15 FQEPVPKAALHRHGRLSPRSAQARVTVEWLRVRDDGSNRTSLIDSRLVSVHESGWKAFDV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 TEAVNFWQQLSRPRQPLLLQVSVQREHLGPLASGAHKLVRFASQGAPAGLGEPQLELHTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 TEAVNFWQQLSRPRQPLLLQVSVQREHLGPLASGAHKLVRFASQGAPAGLGEPQLELHTL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 DLGDYGAQGDCDPEAPMTEGTRCCRQEMYIDLQGMKWAENWVLEPPGFLAYECVGTCRQP :: :::::::::::::::::::::::::::::::::::.::::::::::::::::::.:: CCDS15 DLRDYGAQGDCDPEAPMTEGTRCCRQEMYIDLQGMKWAKNWVLEPPGFLAYECVGTCQQP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 PEALAFKWPFLGPRQCIASETDSLPMIVSIKEGGRTRPQVVSLPNMRVQKCSCASDGALV ::::::.:::::::::::::: :::::::::::::::::::::::::::::::::::::: CCDS15 PEALAFNWPFLGPRQCIASETASLPMIVSIKEGGRTRPQVVSLPNMRVQKCSCASDGALV 310 320 330 340 350 360 pF1KE1 PRRLQP :::::: CCDS15 PRRLQP >>CCDS53479.1 LEFTY2 gene_id:7044|Hs108|chr1 (332 aa) initn: 1631 init1: 1631 opt: 1631 Z-score: 1948.3 bits: 369.0 E(32554): 3.3e-102 Smith-Waterman score: 2109; 86.3% identity (89.3% similar) in 366 aa overlap (1-366:1-332) 10 20 30 40 50 60 pF1KE1 MQPLWLCWALWVLPLASPGAALTGEQLLGSLLRQLQLKEVPTLDRADMEELVIPTHVRAQ : ::::::::::::::.:::::: :::::::::::::.:::.:::::::.::::.::::: CCDS53 MWPLWLCWALWVLPLAGPGAALTEEQLLGSLLRQLQLSEVPVLDRADMEKLVIPAHVRAQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 YVALLQRSHGDRSRGKRFSQSFREVAGRFLALEASTHLLVFGMEQRLPPNSELVQAVLRL ::.::.::::::::::::::::::::::::: :: CCDS53 YVVLLRRSHGDRSRGKRFSQSFREVAGRFLASEA-------------------------- 70 80 90 130 140 150 160 170 180 pF1KE1 FQEPVPKAALHRHGRLSPRSARARVTVEWLRVRDDGSNRTSLIDSRLVSVHESGWKAFDV :::::::::::::.:::::::::::::::::::::::::::::::::::::: CCDS53 --------ALHRHGRLSPRSAQARVTVEWLRVRDDGSNRTSLIDSRLVSVHESGWKAFDV 100 110 120 130 140 190 200 210 220 230 240 pF1KE1 TEAVNFWQQLSRPRQPLLLQVSVQREHLGPLASGAHKLVRFASQGAPAGLGEPQLELHTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 TEAVNFWQQLSRPRQPLLLQVSVQREHLGPLASGAHKLVRFASQGAPAGLGEPQLELHTL 150 160 170 180 190 200 250 260 270 280 290 300 pF1KE1 DLGDYGAQGDCDPEAPMTEGTRCCRQEMYIDLQGMKWAENWVLEPPGFLAYECVGTCRQP :: :::::::::::::::::::::::::::::::::::.::::::::::::::::::.:: CCDS53 DLRDYGAQGDCDPEAPMTEGTRCCRQEMYIDLQGMKWAKNWVLEPPGFLAYECVGTCQQP 210 220 230 240 250 260 310 320 330 340 350 360 pF1KE1 PEALAFKWPFLGPRQCIASETDSLPMIVSIKEGGRTRPQVVSLPNMRVQKCSCASDGALV ::::::.:::::::::::::: :::::::::::::::::::::::::::::::::::::: CCDS53 PEALAFNWPFLGPRQCIASETASLPMIVSIKEGGRTRPQVVSLPNMRVQKCSCASDGALV 270 280 290 300 310 320 pF1KE1 PRRLQP :::::: CCDS53 PRRLQP 330 366 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 22:35:57 2016 done: Sun Nov 6 22:35:57 2016 Total Scan time: 3.000 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]