FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4361, 380 aa 1>>>pF1KE4361 380 - 380 aa - 380 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.2774+/-0.000444; mu= 5.0498+/- 0.028 mean_var=314.1952+/-65.383, 0's: 0 Z-trim(119.3): 232 B-trim: 0 in 0/57 Lambda= 0.072356 statistics sampled from 32846 (33087) to 32846 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.724), E-opt: 0.2 (0.388), width: 16 Scan time: 8.610 The best scores are: opt bits E(85289) NP_002895 (OMIM: 154040) negative elongation facto ( 380) 2537 278.5 1.8e-74 XP_006715268 (OMIM: 154040) PREDICTED: negative el ( 375) 2489 273.5 5.7e-73 XP_011513215 (OMIM: 154040) PREDICTED: negative el ( 325) 2205 243.8 4.4e-64 XP_016866788 (OMIM: 154040) PREDICTED: negative el ( 320) 2157 238.7 1.4e-62 XP_011535347 (OMIM: 612427) PREDICTED: RNA-binding ( 638) 300 45.3 0.00048 XP_005266369 (OMIM: 616453) PREDICTED: zinc finger (1564) 307 46.5 0.00049 NP_055885 (OMIM: 616453) zinc finger CCCH domain-c (1564) 307 46.5 0.00049 NP_001317495 (OMIM: 616453) zinc finger CCCH domai (1668) 307 46.6 0.00051 NP_001317494 (OMIM: 616453) zinc finger CCCH domai (1668) 307 46.6 0.00051 NP_001317496 (OMIM: 616453) zinc finger CCCH domai (1668) 307 46.6 0.00051 NP_001317493 (OMIM: 616453) zinc finger CCCH domai (1669) 307 46.6 0.00051 NP_001070256 (OMIM: 616453) zinc finger CCCH domai (1669) 307 46.6 0.00051 XP_005266367 (OMIM: 616453) PREDICTED: zinc finger (1669) 307 46.6 0.00051 XP_016875968 (OMIM: 616453) PREDICTED: zinc finger (1669) 307 46.6 0.00051 XP_016875967 (OMIM: 616453) PREDICTED: zinc finger (1669) 307 46.6 0.00051 XP_016875969 (OMIM: 616453) PREDICTED: zinc finger (1669) 307 46.6 0.00051 XP_016875966 (OMIM: 616453) PREDICTED: zinc finger (1669) 307 46.6 0.00051 XP_011535346 (OMIM: 612427) PREDICTED: RNA-binding ( 843) 300 45.5 0.00057 NP_067062 (OMIM: 612427) RNA-binding protein 25 [H ( 843) 300 45.5 0.00057 XP_005266364 (OMIM: 616453) PREDICTED: zinc finger (1696) 294 45.2 0.0013 XP_005266361 (OMIM: 616453) PREDICTED: zinc finger (1697) 294 45.2 0.0013 XP_016875965 (OMIM: 616453) PREDICTED: zinc finger (1697) 294 45.2 0.0013 XP_005266360 (OMIM: 616453) PREDICTED: zinc finger (1697) 294 45.2 0.0013 XP_016875964 (OMIM: 616453) PREDICTED: zinc finger (1697) 294 45.2 0.0013 XP_005266362 (OMIM: 616453) PREDICTED: zinc finger (1697) 294 45.2 0.0013 XP_005266363 (OMIM: 616453) PREDICTED: zinc finger (1697) 294 45.2 0.0013 XP_005266358 (OMIM: 616453) PREDICTED: zinc finger (1697) 294 45.2 0.0013 XP_005266359 (OMIM: 616453) PREDICTED: zinc finger (1697) 294 45.2 0.0013 XP_016864545 (OMIM: 609268) PREDICTED: splicing re ( 359) 273 42.1 0.0024 NP_001310463 (OMIM: 609268) splicing regulatory gl ( 359) 273 42.1 0.0024 XP_011541473 (OMIM: 609268) PREDICTED: splicing re ( 508) 275 42.6 0.0026 NP_631907 (OMIM: 609268) splicing regulatory gluta ( 508) 275 42.6 0.0026 NP_001310456 (OMIM: 609268) splicing regulatory gl ( 508) 275 42.6 0.0026 NP_001310462 (OMIM: 609268) splicing regulatory gl ( 538) 275 42.6 0.0026 NP_001070667 (OMIM: 609268) splicing regulatory gl ( 624) 275 42.7 0.0029 XP_011525542 (OMIM: 180740) PREDICTED: U1 small nu ( 345) 263 41.1 0.0048 XP_011526811 (OMIM: 604140) PREDICTED: death-induc (2240) 277 43.6 0.0054 NP_001180298 (OMIM: 604140) death-inducer oblitera (2240) 277 43.6 0.0054 NP_149072 (OMIM: 604140) death-inducer obliterator (2240) 277 43.6 0.0054 XP_011526806 (OMIM: 604140) PREDICTED: death-induc (2276) 277 43.6 0.0054 XP_011526810 (OMIM: 604140) PREDICTED: death-induc (2276) 277 43.6 0.0054 XP_011526809 (OMIM: 604140) PREDICTED: death-induc (2276) 277 43.6 0.0054 XP_011526807 (OMIM: 604140) PREDICTED: death-induc (2276) 277 43.6 0.0054 XP_011526808 (OMIM: 604140) PREDICTED: death-induc (2276) 277 43.6 0.0054 NP_003080 (OMIM: 180740) U1 small nuclear ribonucl ( 437) 263 41.2 0.0056 NP_001310464 (OMIM: 609268) splicing regulatory gl ( 358) 254 40.2 0.0095 XP_011509248 (OMIM: 607380,616629) PREDICTED: TRAF ( 701) 259 41.1 0.0098 >>NP_002895 (OMIM: 154040) negative elongation factor E (380 aa) initn: 2537 init1: 2537 opt: 2537 Z-score: 1458.1 bits: 278.5 E(85289): 1.8e-74 Smith-Waterman score: 2537; 100.0% identity (100.0% similar) in 380 aa overlap (1-380:1-380) 10 20 30 40 50 60 pF1KE4 MLVIPPGLSEEEEALQKKFNKLKKKKKALLALKKQSSSSTTSQGGVKRSLSEQPVMDTAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MLVIPPGLSEEEEALQKKFNKLKKKKKALLALKKQSSSSTTSQGGVKRSLSEQPVMDTAT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 ATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 ATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 QESSRRPQRKSLYESFVSSSDRLRELGPDGEEAEGPGAGDGPPRSFDWGYEERSGAHSSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 QESSRRPQRKSLYESFVSSSDRLRELGPDGEEAEGPGAGDGPPRSFDWGYEERSGAHSSA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 SPPRSRSRDRSHERNRDRDRDRERDRDRDRDRDRERDRDRDRDRDRDRERDRDRERDRDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 SPPRSRSRDRSHERNRDRDRDRERDRDRDRDRDRERDRDRDRDRDRDRERDRDRERDRDR 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 DREGPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 DREGPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 TYEKMESADQAVAELNGTQVESVQLKVNIARKQPMLDAATGKSVWGSLAVQNSPKGCHRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 TYEKMESADQAVAELNGTQVESVQLKVNIARKQPMLDAATGKSVWGSLAVQNSPKGCHRD 310 320 330 340 350 360 370 380 pF1KE4 KRTQIVYSDDVYKENLVDGF :::::::::::::::::::: NP_002 KRTQIVYSDDVYKENLVDGF 370 380 >>XP_006715268 (OMIM: 154040) PREDICTED: negative elonga (375 aa) initn: 2003 init1: 1675 opt: 2489 Z-score: 1431.0 bits: 273.5 E(85289): 5.7e-73 Smith-Waterman score: 2489; 98.7% identity (98.7% similar) in 380 aa overlap (1-380:1-375) 10 20 30 40 50 60 pF1KE4 MLVIPPGLSEEEEALQKKFNKLKKKKKALLALKKQSSSSTTSQGGVKRSLSEQPVMDTAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MLVIPPGLSEEEEALQKKFNKLKKKKKALLALKKQSSSSTTSQGGVKRSLSEQPVMDTAT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 ATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 ATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 QESSRRPQRKSLYESFVSSSDRLRELGPDGEEAEGPGAGDGPPRSFDWGYEERSGAHSSA ::::::::::::::: :::::::::::::::::::::::::::::::::::::::: XP_006 QESSRRPQRKSLYES-----DRLRELGPDGEEAEGPGAGDGPPRSFDWGYEERSGAHSSA 130 140 150 160 170 190 200 210 220 230 240 pF1KE4 SPPRSRSRDRSHERNRDRDRDRERDRDRDRDRDRERDRDRDRDRDRDRERDRDRERDRDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 SPPRSRSRDRSHERNRDRDRDRERDRDRDRDRDRERDRDRDRDRDRDRERDRDRERDRDR 180 190 200 210 220 230 250 260 270 280 290 300 pF1KE4 DREGPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 DREGPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV 240 250 260 270 280 290 310 320 330 340 350 360 pF1KE4 TYEKMESADQAVAELNGTQVESVQLKVNIARKQPMLDAATGKSVWGSLAVQNSPKGCHRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 TYEKMESADQAVAELNGTQVESVQLKVNIARKQPMLDAATGKSVWGSLAVQNSPKGCHRD 300 310 320 330 340 350 370 380 pF1KE4 KRTQIVYSDDVYKENLVDGF :::::::::::::::::::: XP_006 KRTQIVYSDDVYKENLVDGF 360 370 >>XP_011513215 (OMIM: 154040) PREDICTED: negative elonga (325 aa) initn: 2205 init1: 2205 opt: 2205 Z-score: 1271.5 bits: 243.8 E(85289): 4.4e-64 Smith-Waterman score: 2205; 100.0% identity (100.0% similar) in 325 aa overlap (56-380:1-325) 30 40 50 60 70 80 pF1KE4 KKALLALKKQSSSSTTSQGGVKRSLSEQPVMDTATATEQAKQLVKSGAISAIKAETKNSG :::::::::::::::::::::::::::::: XP_011 MDTATATEQAKQLVKSGAISAIKAETKNSG 10 20 30 90 100 110 120 130 140 pF1KE4 FKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDLQESSRRPQRKSLYESFVSSSDRLRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 FKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDLQESSRRPQRKSLYESFVSSSDRLRE 40 50 60 70 80 90 150 160 170 180 190 200 pF1KE4 LGPDGEEAEGPGAGDGPPRSFDWGYEERSGAHSSASPPRSRSRDRSHERNRDRDRDRERD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LGPDGEEAEGPGAGDGPPRSFDWGYEERSGAHSSASPPRSRSRDRSHERNRDRDRDRERD 100 110 120 130 140 150 210 220 230 240 250 260 pF1KE4 RDRDRDRDRERDRDRDRDRDRDRERDRDRERDRDRDREGPFRRSDSFPERRAPRKGNTLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 RDRDRDRDRERDRDRDRDRDRDRERDRDRERDRDRDREGPFRRSDSFPERRAPRKGNTLY 160 170 180 190 200 210 270 280 290 300 310 320 pF1KE4 VYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQL 220 230 240 250 260 270 330 340 350 360 370 380 pF1KE4 KVNIARKQPMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSDDVYKENLVDGF ::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KVNIARKQPMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSDDVYKENLVDGF 280 290 300 310 320 >>XP_016866788 (OMIM: 154040) PREDICTED: negative elonga (320 aa) initn: 1675 init1: 1675 opt: 2157 Z-score: 1244.5 bits: 238.7 E(85289): 1.4e-62 Smith-Waterman score: 2157; 98.5% identity (98.5% similar) in 325 aa overlap (56-380:1-320) 30 40 50 60 70 80 pF1KE4 KKALLALKKQSSSSTTSQGGVKRSLSEQPVMDTATATEQAKQLVKSGAISAIKAETKNSG :::::::::::::::::::::::::::::: XP_016 MDTATATEQAKQLVKSGAISAIKAETKNSG 10 20 30 90 100 110 120 130 140 pF1KE4 FKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDLQESSRRPQRKSLYESFVSSSDRLRE :::::::::::::::::::::::::::::::::::::::::::::::::: ::::: XP_016 FKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDLQESSRRPQRKSLYES-----DRLRE 40 50 60 70 80 150 160 170 180 190 200 pF1KE4 LGPDGEEAEGPGAGDGPPRSFDWGYEERSGAHSSASPPRSRSRDRSHERNRDRDRDRERD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LGPDGEEAEGPGAGDGPPRSFDWGYEERSGAHSSASPPRSRSRDRSHERNRDRDRDRERD 90 100 110 120 130 140 210 220 230 240 250 260 pF1KE4 RDRDRDRDRERDRDRDRDRDRDRERDRDRERDRDRDREGPFRRSDSFPERRAPRKGNTLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RDRDRDRDRERDRDRDRDRDRDRERDRDRERDRDRDREGPFRRSDSFPERRAPRKGNTLY 150 160 170 180 190 200 270 280 290 300 310 320 pF1KE4 VYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQL 210 220 230 240 250 260 330 340 350 360 370 380 pF1KE4 KVNIARKQPMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSDDVYKENLVDGF ::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KVNIARKQPMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSDDVYKENLVDGF 270 280 290 300 310 320 >>XP_011535347 (OMIM: 612427) PREDICTED: RNA-binding pro (638 aa) initn: 297 init1: 297 opt: 300 Z-score: 193.6 bits: 45.3 E(85289): 0.00048 Smith-Waterman score: 311; 31.4% identity (60.1% similar) in 188 aa overlap (75-260:15-195) 50 60 70 80 90 100 pF1KE4 GVKRSLSEQPVMDTATATEQAKQLVKSGAISAIKAETKNS-GFKRSRTLEGKLKDPEKGP : ..: ...: . :.. : : .. : XP_011 MIKGAIEVLIREYSSELNAPSQESDSHPRKKKKEKKEDIFRRFP 10 20 30 40 110 120 130 140 150 160 pF1KE4 VPTFQPFQRSISADDDLQESSRRPQRKSLYESFVSSSDRLRELGPDGEEAEGPGAGDGPP : . :. . . .:.. . ....: .: ..:. :: .: . XP_011 VAPLIPYP--LITKEDINAIEMEEDKRDLISREIS---KFRDTHKKLEEEKGKKEKER-- 50 60 70 80 90 170 180 190 200 210 220 pF1KE4 RSFDWGYEERSGAHSSASPPRSRSRDRSHERNRDRDRDRERDRDRDRDRDRERDRDRDRD . .. .:: . : : :.: .::.:.....:::.:.::::::: ..:::::: XP_011 QEIEKERRERERERERERERREREREREREREREKEKERERERERDRDRDRTKERDRDRD 100 110 120 130 140 150 230 240 250 260 270 280 pF1KE4 RDRDRERDRDRERDRDRDREGPFRRS-DSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSP :.:::.:::.: ::..:: ..: : ::. :. XP_011 RERDRDRDRERSSDRNKDRSRSREKSRDRERERERERERERERERERERERERERERERE 160 170 180 190 200 210 290 300 310 320 330 340 pF1KE4 FGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPMLDAATGK XP_011 REREKDKKRDREEDEEDAYERRKLERKLREKEAAYQERLKNWEIRERKKTREYEKEAERE 220 230 240 250 260 270 >>XP_005266369 (OMIM: 616453) PREDICTED: zinc finger CCC (1564 aa) initn: 1012 init1: 280 opt: 307 Z-score: 193.4 bits: 46.5 E(85289): 0.00049 Smith-Waterman score: 310; 32.1% identity (59.3% similar) in 221 aa overlap (63-260:537-754) 40 50 60 70 80 90 pF1KE4 KKQSSSSTTSQGGVKRSLSEQPVMDTATATEQAKQLVKSGAISAIKAETKNSGFKRSRTL :... ... . . ..: .:. . ::: XP_005 YRDREGRDTHRKEDTYPEESRSYGRNHLREESSRTEIRNESRNESRSEIRNDRMGRSR-- 510 520 530 540 550 560 100 110 120 130 140 pF1KE4 EGKLKD-PEKGPVPTFQPFQRSISADDDLQES----------SRRPQRKSLYESFVSSSD :.. . :::: . : :.... ..: .: :.: . .. :: . XP_005 -GRVPELPEKGSRGSRGSQIDSHSSNSNYHDSWETRSSYPERDRYPERDNRDQARDSSFE 570 580 590 600 610 620 150 160 170 180 190 pF1KE4 RL---RELGPDGEEAEGPGA-----GDGPPRSFDWGYEERSGAH-SSASPPRSRSRDRSH : :. . :. . :.. : . : ::: . .. :.: ::: . XP_005 RRHGERDRRDNRERDQRPSSPIRHQGRNDELERDERREERRVDRVDDRRDERARERDRER 630 640 650 660 670 680 200 210 220 230 240 pF1KE4 ERNRDRDRDRERDRDRDRDRDRERDRDRDRDRDRDRERDRDRERDRDRD--REGPFRRS- ::.:.:.:.:::.:::.:...:: .:.: :.:.:.::..:::::::::: :: .: XP_005 ERDRERERERERERDREREKERELERERAREREREREKERDRERDRDRDHDRERERERER 690 700 710 720 730 740 250 260 270 280 290 300 pF1KE4 DSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESAD : ::. :. XP_005 DREKEREREREERERERERERERERERERERERARERDKERERQRDWEDKDKGRDDRREK 750 760 770 780 790 800 >>NP_055885 (OMIM: 616453) zinc finger CCCH domain-conta (1564 aa) initn: 1012 init1: 280 opt: 307 Z-score: 193.4 bits: 46.5 E(85289): 0.00049 Smith-Waterman score: 310; 32.1% identity (59.3% similar) in 221 aa overlap (63-260:537-754) 40 50 60 70 80 90 pF1KE4 KKQSSSSTTSQGGVKRSLSEQPVMDTATATEQAKQLVKSGAISAIKAETKNSGFKRSRTL :... ... . . ..: .:. . ::: NP_055 YRDREGRDTHRKEDTYPEESRSYGRNHLREESSRTEIRNESRNESRSEIRNDRMGRSR-- 510 520 530 540 550 560 100 110 120 130 140 pF1KE4 EGKLKD-PEKGPVPTFQPFQRSISADDDLQES----------SRRPQRKSLYESFVSSSD :.. . :::: . : :.... ..: .: :.: . .. :: . NP_055 -GRVPELPEKGSRGSRGSQIDSHSSNSNYHDSWETRSSYPERDRYPERDNRDQARDSSFE 570 580 590 600 610 620 150 160 170 180 190 pF1KE4 RL---RELGPDGEEAEGPGA-----GDGPPRSFDWGYEERSGAH-SSASPPRSRSRDRSH : :. . :. . :.. : . : ::: . .. :.: ::: . NP_055 RRHGERDRRDNRERDQRPSSPIRHQGRNDELERDERREERRVDRVDDRRDERARERDRER 630 640 650 660 670 680 200 210 220 230 240 pF1KE4 ERNRDRDRDRERDRDRDRDRDRERDRDRDRDRDRDRERDRDRERDRDRD--REGPFRRS- ::.:.:.:.:::.:::.:...:: .:.: :.:.:.::..:::::::::: :: .: NP_055 ERDRERERERERERDREREKERELERERAREREREREKERDRERDRDRDHDRERERERER 690 700 710 720 730 740 250 260 270 280 290 300 pF1KE4 DSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESAD : ::. :. NP_055 DREKEREREREERERERERERERERERERERERARERDKERERQRDWEDKDKGRDDRREK 750 760 770 780 790 800 >>NP_001317495 (OMIM: 616453) zinc finger CCCH domain-co (1668 aa) initn: 1012 init1: 280 opt: 307 Z-score: 193.1 bits: 46.6 E(85289): 0.00051 Smith-Waterman score: 310; 32.1% identity (59.3% similar) in 221 aa overlap (63-260:537-754) 40 50 60 70 80 90 pF1KE4 KKQSSSSTTSQGGVKRSLSEQPVMDTATATEQAKQLVKSGAISAIKAETKNSGFKRSRTL :... ... . . ..: .:. . ::: NP_001 YRDREGRDTHRKEDTYPEESRSYGRNHLREESSRTEIRNESRNESRSEIRNDRMGRSR-- 510 520 530 540 550 560 100 110 120 130 140 pF1KE4 EGKLKD-PEKGPVPTFQPFQRSISADDDLQES----------SRRPQRKSLYESFVSSSD :.. . :::: . : :.... ..: .: :.: . .. :: . NP_001 -GRVPELPEKGSRGSRGSQIDSHSSNSNYHDSWETRSSYPERDRYPERDNRDQARDSSFE 570 580 590 600 610 620 150 160 170 180 190 pF1KE4 RL---RELGPDGEEAEGPGA-----GDGPPRSFDWGYEERSGAH-SSASPPRSRSRDRSH : :. . :. . :.. : . : ::: . .. :.: ::: . NP_001 RRHGERDRRDNRERDQRPSSPIRHQGRNDELERDERREERRVDRVDDRRDERARERDRER 630 640 650 660 670 680 200 210 220 230 240 pF1KE4 ERNRDRDRDRERDRDRDRDRDRERDRDRDRDRDRDRERDRDRERDRDRD--REGPFRRS- ::.:.:.:.:::.:::.:...:: .:.: :.:.:.::..:::::::::: :: .: NP_001 ERDRERERERERERDREREKERELERERAREREREREKERDRERDRDRDHDRERERERER 690 700 710 720 730 740 250 260 270 280 290 300 pF1KE4 DSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESAD : ::. :. NP_001 DREKEREREREERERERERERERERERERERERARERDKERERQRDWEDKDKGRDDRREK 750 760 770 780 790 800 >>NP_001317494 (OMIM: 616453) zinc finger CCCH domain-co (1668 aa) initn: 1012 init1: 280 opt: 307 Z-score: 193.1 bits: 46.6 E(85289): 0.00051 Smith-Waterman score: 310; 32.1% identity (59.3% similar) in 221 aa overlap (63-260:537-754) 40 50 60 70 80 90 pF1KE4 KKQSSSSTTSQGGVKRSLSEQPVMDTATATEQAKQLVKSGAISAIKAETKNSGFKRSRTL :... ... . . ..: .:. . ::: NP_001 YRDREGRDTHRKEDTYPEESRSYGRNHLREESSRTEIRNESRNESRSEIRNDRMGRSR-- 510 520 530 540 550 560 100 110 120 130 140 pF1KE4 EGKLKD-PEKGPVPTFQPFQRSISADDDLQES----------SRRPQRKSLYESFVSSSD :.. . :::: . : :.... ..: .: :.: . .. :: . NP_001 -GRVPELPEKGSRGSRGSQIDSHSSNSNYHDSWETRSSYPERDRYPERDNRDQARDSSFE 570 580 590 600 610 620 150 160 170 180 190 pF1KE4 RL---RELGPDGEEAEGPGA-----GDGPPRSFDWGYEERSGAH-SSASPPRSRSRDRSH : :. . :. . :.. : . : ::: . .. :.: ::: . NP_001 RRHGERDRRDNRERDQRPSSPIRHQGRNDELERDERREERRVDRVDDRRDERARERDRER 630 640 650 660 670 680 200 210 220 230 240 pF1KE4 ERNRDRDRDRERDRDRDRDRDRERDRDRDRDRDRDRERDRDRERDRDRD--REGPFRRS- ::.:.:.:.:::.:::.:...:: .:.: :.:.:.::..:::::::::: :: .: NP_001 ERDRERERERERERDREREKERELERERAREREREREKERDRERDRDRDHDRERERERER 690 700 710 720 730 740 250 260 270 280 290 300 pF1KE4 DSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESAD : ::. :. NP_001 DREKEREREREERERERERERERERERERERERARERDKERERQRDWEDKDKGRDDRREK 750 760 770 780 790 800 >>NP_001317496 (OMIM: 616453) zinc finger CCCH domain-co (1668 aa) initn: 1012 init1: 280 opt: 307 Z-score: 193.1 bits: 46.6 E(85289): 0.00051 Smith-Waterman score: 310; 32.1% identity (59.3% similar) in 221 aa overlap (63-260:537-754) 40 50 60 70 80 90 pF1KE4 KKQSSSSTTSQGGVKRSLSEQPVMDTATATEQAKQLVKSGAISAIKAETKNSGFKRSRTL :... ... . . ..: .:. . ::: NP_001 YRDREGRDTHRKEDTYPEESRSYGRNHLREESSRTEIRNESRNESRSEIRNDRMGRSR-- 510 520 530 540 550 560 100 110 120 130 140 pF1KE4 EGKLKD-PEKGPVPTFQPFQRSISADDDLQES----------SRRPQRKSLYESFVSSSD :.. . :::: . : :.... ..: .: :.: . .. :: . NP_001 -GRVPELPEKGSRGSRGSQIDSHSSNSNYHDSWETRSSYPERDRYPERDNRDQARDSSFE 570 580 590 600 610 620 150 160 170 180 190 pF1KE4 RL---RELGPDGEEAEGPGA-----GDGPPRSFDWGYEERSGAH-SSASPPRSRSRDRSH : :. . :. . :.. : . : ::: . .. :.: ::: . NP_001 RRHGERDRRDNRERDQRPSSPIRHQGRNDELERDERREERRVDRVDDRRDERARERDRER 630 640 650 660 670 680 200 210 220 230 240 pF1KE4 ERNRDRDRDRERDRDRDRDRDRERDRDRDRDRDRDRERDRDRERDRDRD--REGPFRRS- ::.:.:.:.:::.:::.:...:: .:.: :.:.:.::..:::::::::: :: .: NP_001 ERDRERERERERERDREREKERELERERAREREREREKERDRERDRDRDHDRERERERER 690 700 710 720 730 740 250 260 270 280 290 300 pF1KE4 DSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESAD : ::. :. NP_001 DREKEREREREERERERERERERERERERERERARERDKERERQRDWEDKDKGRDDRREK 750 760 770 780 790 800 380 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Thu Nov 3 06:32:42 2016 done: Thu Nov 3 06:32:44 2016 Total Scan time: 8.610 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]