FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4361, 380 aa
  1>>>pF1KE4361 380 - 380 aa - 380 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.1111+/-0.000959; mu= 5.3485+/- 0.057
 mean_var=231.0341+/-46.890, 0's: 0 Z-trim(111.7): 116  B-trim: 0 in 0/53
 Lambda= 0.084379
 statistics sampled from 12504 (12621) to 12504 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.388), width:  16
 Scan time:  2.870

The best scores are:                                      opt bits E(32554)
CCDS4730.1 NELFE gene_id:7936|Hs108|chr6           ( 380) 2537 321.7   7e-88


>>CCDS4730.1 NELFE gene_id:7936|Hs108|chr6                (380 aa)
 initn: 2537 init1: 2537 opt: 2537  Z-score: 1691.3  bits: 321.7 E(32554): 7e-88
Smith-Waterman score: 2537; 100.0% identity (100.0% similar) in 380 aa overlap (1-380:1-380)

               10        20        30        40        50        60
pF1KE4 MLVIPPGLSEEEEALQKKFNKLKKKKKALLALKKQSSSSTTSQGGVKRSLSEQPVMDTAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MLVIPPGLSEEEEALQKKFNKLKKKKKALLALKKQSSSSTTSQGGVKRSLSEQPVMDTAT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 ATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 QESSRRPQRKSLYESFVSSSDRLRELGPDGEEAEGPGAGDGPPRSFDWGYEERSGAHSSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QESSRRPQRKSLYESFVSSSDRLRELGPDGEEAEGPGAGDGPPRSFDWGYEERSGAHSSA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 SPPRSRSRDRSHERNRDRDRDRERDRDRDRDRDRERDRDRDRDRDRDRERDRDRERDRDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SPPRSRSRDRSHERNRDRDRDRERDRDRDRDRDRERDRDRDRDRDRDRERDRDRERDRDR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 DREGPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DREGPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 TYEKMESADQAVAELNGTQVESVQLKVNIARKQPMLDAATGKSVWGSLAVQNSPKGCHRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TYEKMESADQAVAELNGTQVESVQLKVNIARKQPMLDAATGKSVWGSLAVQNSPKGCHRD
              310       320       330       340       350       360

              370       380
pF1KE4 KRTQIVYSDDVYKENLVDGF
       ::::::::::::::::::::
CCDS47 KRTQIVYSDDVYKENLVDGF
              370       380




380 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:32:42 2016 done: Thu Nov  3 06:32:42 2016
 Total Scan time:  2.870 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]