FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3623, 148 aa 1>>>pF1KE3623 148 - 148 aa - 148 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.3592+/-0.000602; mu= 16.9400+/- 0.036 mean_var=59.9561+/-11.848, 0's: 0 Z-trim(112.4): 12 B-trim: 0 in 0/49 Lambda= 0.165637 statistics sampled from 13196 (13203) to 13196 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.766), E-opt: 0.2 (0.406), width: 16 Scan time: 1.730 The best scores are: opt bits E(32554) CCDS5503.1 RAMP3 gene_id:10268|Hs108|chr7 ( 148) 1044 256.8 3.6e-69 CCDS2522.1 RAMP1 gene_id:10267|Hs108|chr2 ( 148) 297 78.3 2e-15 CCDS77546.1 RAMP1 gene_id:10267|Hs108|chr2 ( 126) 294 77.5 2.9e-15 CCDS11437.1 RAMP2 gene_id:10266|Hs108|chr17 ( 175) 248 66.6 7.4e-12 >>CCDS5503.1 RAMP3 gene_id:10268|Hs108|chr7 (148 aa) initn: 1044 init1: 1044 opt: 1044 Z-score: 1355.3 bits: 256.8 E(32554): 3.6e-69 Smith-Waterman score: 1044; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:1-148) 10 20 30 40 50 60 pF1KE3 METGALRRPQLLPLLLLLCGGCPRAGGCNETGMLERLPLCGKAFADMMGKVDVWKWCNLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 METGALRRPQLLPLLLLLCGGCPRAGGCNETGMLERLPLCGKAFADMMGKVDVWKWCNLS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 EFIVYYESFTNCTEMEANVVGCYWPNPLAQGFITGIHRQFFSNCTVDRVHLEDPPDEVLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 EFIVYYESFTNCTEMEANVVGCYWPNPLAQGFITGIHRQFFSNCTVDRVHLEDPPDEVLI 70 80 90 100 110 120 130 140 pF1KE3 PLIVIPVVLTVAMAGLVVWRSKRTDTLL :::::::::::::::::::::::::::: CCDS55 PLIVIPVVLTVAMAGLVVWRSKRTDTLL 130 140 >>CCDS2522.1 RAMP1 gene_id:10267|Hs108|chr2 (148 aa) initn: 300 init1: 286 opt: 297 Z-score: 390.6 bits: 78.3 E(32554): 2e-15 Smith-Waterman score: 297; 34.3% identity (63.5% similar) in 137 aa overlap (14-148:13-148) 10 20 30 40 50 pF1KE3 METGALRRPQLLPLLLLLCGGCPRAGGCNET--GMLERLPLCGKAFADMMGKVDVWKWCN : ::: . .:.:. : : : :: : : : ::. CCDS25 MARALCRLPRRGLWLLLAHHLFMTTACQEANYGALLR-ELCLTQFQVDMEAVGETLWCD 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 LSEFIVYYESFTNCTEMEANVVGCYWPNPLAQGFITGIHRQFFSNCTVDRVHLEDPPDEV .. : :. ...:: :. .::.::: .. :. ..: ..: .: .. ..::: . CCDS25 WGRTIRSYRELADCTWHMAEKLGCFWPNAEVDRFFLAVHGRYFRSCPISGRAVRDPPGSI 60 70 80 90 100 110 120 130 140 pF1KE3 LIPLIVIPVVLTVAMAGLVVWRSKRTDTLL : :.::.:...:. ...::::.::::. .. CCDS25 LYPFIVVPITVTLLVTALVVWQSKRTEGIV 120 130 140 >>CCDS77546.1 RAMP1 gene_id:10267|Hs108|chr2 (126 aa) initn: 300 init1: 286 opt: 294 Z-score: 387.6 bits: 77.5 E(32554): 2.9e-15 Smith-Waterman score: 294; 35.0% identity (65.9% similar) in 123 aa overlap (28-148:5-126) 10 20 30 40 50 pF1KE3 METGALRRPQLLPLLLLLCGGCPRAGGCNET--GMLERLPLCGKAFADMMGKVDVWKWCN :.:. : : : :: : : : ::. CCDS77 MTTACQEANYGALLR-ELCLTQFQVDMEAVGETLWCD 10 20 30 60 70 80 90 100 110 pF1KE3 LSEFIVYYESFTNCTEMEANVVGCYWPNPLAQGFITGIHRQFFSNCTVDRVHLEDPPDEV .. : :. ...:: :. .::.::: .. :. ..: ..: .: .. ..::: . CCDS77 WGRTIRSYRELADCTWHMAEKLGCFWPNAEVDRFFLAVHGRYFRSCPISGRAVRDPPGSI 40 50 60 70 80 90 120 130 140 pF1KE3 LIPLIVIPVVLTVAMAGLVVWRSKRTDTLL : :.::.:...:. ...::::.::::. .. CCDS77 LYPFIVVPITVTLLVTALVVWQSKRTEGIV 100 110 120 >>CCDS11437.1 RAMP2 gene_id:10266|Hs108|chr17 (175 aa) initn: 285 init1: 224 opt: 248 Z-score: 326.4 bits: 66.6 E(32554): 7.4e-12 Smith-Waterman score: 248; 28.9% identity (56.3% similar) in 142 aa overlap (4-145:32-172) 10 20 30 pF1KE3 METGALRRPQLLPLLLLLCGGCPRAGGCNETGM ::. :. : : : . : . .. CCDS11 ASLRVERAGGPRLPRTRVGRPAALRLLLLLGAVLNPHEALAQPLPTTGTPGSEGGTVKNY 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE3 LERLPLCGKAFADMMGKVDVWKWCNLSEFIVYYESFTNCTEMEANVVGCYWPNPLAQGFI . .: . . :.: .. ::. . . : .. .: : :.. .:::::. .: CCDS11 ETAVQFCWNHYKDQMDPIEK-DWCDWAMISRPYSTLRDCLEHFAELFDLGFPNPLAERII 70 80 90 100 110 120 100 110 120 130 140 pF1KE3 TGIHRQFFSNCTVDRVHLEDPPDEVLIPLIVIPVVLTVAMAGLVVWRSKRTDTLL :. :.::.. . . :::..::. .:. :. : . ::::::: .. CCDS11 FETHQIHFANCSLVQPTFSDPPEDVLLAMIIAPICLIPFLITLVVWRSKDSEAQA 130 140 150 160 170 148 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 22:43:06 2016 done: Sun Nov 6 22:43:06 2016 Total Scan time: 1.730 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]