Result of FASTA (omim) for
pFN21AE6150
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6150, 137 aa
1>>>pF1KE6150 137 - 137 aa - 137 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7505+/-0.000355; mu= 13.4583+/- 0.022
mean_var=53.7148+/-10.883, 0's: 0 Z-trim(111.3): 28 B-trim: 0 in 0/53
Lambda= 0.174996
statistics sampled from 19837 (19865) to 19837 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.233), width: 16
Scan time: 3.290
The best scores are: opt bits E(85289)
NP_004369 (OMIM: 180230) cellular retinoic acid-bi ( 137) 901 235.3 2.3e-62
XP_016855832 (OMIM: 180231) PREDICTED: cellular re ( 138) 694 183.0 1.3e-46
NP_001186652 (OMIM: 180231) cellular retinoic acid ( 138) 694 183.0 1.3e-46
NP_001869 (OMIM: 180231) cellular retinoic acid-bi ( 138) 694 183.0 1.3e-46
NP_002890 (OMIM: 180260) retinol-binding protein 1 ( 197) 334 92.2 3.9e-19
NP_001437 (OMIM: 602965) fatty acid-binding protei ( 132) 318 88.1 4.6e-18
NP_004093 (OMIM: 134651) fatty acid-binding protei ( 133) 317 87.9 5.5e-18
NP_002668 (OMIM: 170715) myelin P2 protein [Homo s ( 132) 307 85.3 3.2e-17
NP_443192 (OMIM: 608604) retinoid-binding protein ( 134) 305 84.8 4.6e-17
NP_113679 (OMIM: 611866) retinol-binding protein 5 ( 135) 296 82.6 2.2e-16
NP_001305968 (OMIM: 602965) fatty acid-binding pro ( 166) 290 81.1 7.5e-16
NP_004155 (OMIM: 180280) retinol-binding protein 2 ( 134) 281 78.8 3e-15
XP_011539309 (OMIM: 134651) PREDICTED: fatty acid- ( 126) 274 77.0 9.8e-15
NP_001433 (OMIM: 600434) fatty acid-binding protei ( 132) 272 76.5 1.4e-14
NP_001435 (OMIM: 605168) fatty acid-binding protei ( 135) 269 75.7 2.5e-14
NP_001305970 (OMIM: 602965) fatty acid-binding pro ( 97) 251 71.1 4.4e-13
NP_001124465 (OMIM: 180260) retinol-binding protei ( 153) 248 70.5 1.1e-12
NP_001124464 (OMIM: 180260) retinol-binding protei ( 157) 245 69.7 1.9e-12
XP_016875491 (OMIM: 611866) PREDICTED: retinol-bin ( 126) 237 67.6 6.4e-12
NP_000125 (OMIM: 134640) fatty acid-binding protei ( 132) 233 66.6 1.3e-11
NP_001307925 (OMIM: 134651) fatty acid-binding pro ( 144) 232 66.4 1.7e-11
NP_001305971 (OMIM: 602965) fatty acid-binding pro ( 128) 228 65.4 3.1e-11
NP_001316383 (OMIM: 611866) retinol-binding protei ( 86) 196 57.2 6.1e-09
NP_001434 (OMIM: 134650) fatty acid-binding protei ( 127) 169 50.5 9.4e-07
NP_001436 (OMIM: 600422) gastrotropin isoform 2 [H ( 128) 118 37.6 0.0071
NP_001035532 (OMIM: 600422) gastrotropin isoform 1 ( 177) 118 37.7 0.0094
NP_001124430 (OMIM: 600422) gastrotropin isoform 1 ( 177) 118 37.7 0.0094
>>NP_004369 (OMIM: 180230) cellular retinoic acid-bindin (137 aa)
initn: 901 init1: 901 opt: 901 Z-score: 1240.5 bits: 235.3 E(85289): 2.3e-62
Smith-Waterman score: 901; 99.3% identity (99.3% similar) in 137 aa overlap (1-137:1-137)
10 20 30 40 50 60
pF1KE6 MPNFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MPNFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTVR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 TTEINFKVGEGFEEETVDGRKCRSLATWENENKIHCTQTLLEGDGPKTYWTSELANDELI
::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
NP_004 TTEINFKVGEGFEEETVDGRKCRSLATWENENKIHCTQTLLEGDGPKTYWTRELANDELI
70 80 90 100 110 120
130
pF1KE6 LTFGADDVVCTRIYVRE
:::::::::::::::::
NP_004 LTFGADDVVCTRIYVRE
130
>>XP_016855832 (OMIM: 180231) PREDICTED: cellular retino (138 aa)
initn: 596 init1: 596 opt: 694 Z-score: 958.0 bits: 183.0 E(85289): 1.3e-46
Smith-Waterman score: 694; 76.1% identity (89.9% similar) in 138 aa overlap (1-137:1-138)
10 20 30 40 50 60
pF1KE6 MPNFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTVR
::::.:.::. ::::.::::.::::.::::.:::::::: :::.:.:: ::::::::::
XP_016 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVR
10 20 30 40 50 60
70 80 90 100 110
pF1KE6 TTEINFKVGEGFEEETVDGRKCRSLATWENENKIHCTQTLLEGDGPKTYWTSELAND-EL
:::::::::: :::.::::: :.::. ::.:::. : : ::.:.:::: :: ::.:: ::
XP_016 TTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGEL
70 80 90 100 110 120
120 130
pF1KE6 ILTFGADDVVCTRIYVRE
:::. ::::::::.::::
XP_016 ILTMTADDVVCTRVYVRE
130
>>NP_001186652 (OMIM: 180231) cellular retinoic acid-bin (138 aa)
initn: 596 init1: 596 opt: 694 Z-score: 958.0 bits: 183.0 E(85289): 1.3e-46
Smith-Waterman score: 694; 76.1% identity (89.9% similar) in 138 aa overlap (1-137:1-138)
10 20 30 40 50 60
pF1KE6 MPNFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTVR
::::.:.::. ::::.::::.::::.::::.:::::::: :::.:.:: ::::::::::
NP_001 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVR
10 20 30 40 50 60
70 80 90 100 110
pF1KE6 TTEINFKVGEGFEEETVDGRKCRSLATWENENKIHCTQTLLEGDGPKTYWTSELAND-EL
:::::::::: :::.::::: :.::. ::.:::. : : ::.:.:::: :: ::.:: ::
NP_001 TTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGEL
70 80 90 100 110 120
120 130
pF1KE6 ILTFGADDVVCTRIYVRE
:::. ::::::::.::::
NP_001 ILTMTADDVVCTRVYVRE
130
>>NP_001869 (OMIM: 180231) cellular retinoic acid-bindin (138 aa)
initn: 596 init1: 596 opt: 694 Z-score: 958.0 bits: 183.0 E(85289): 1.3e-46
Smith-Waterman score: 694; 76.1% identity (89.9% similar) in 138 aa overlap (1-137:1-138)
10 20 30 40 50 60
pF1KE6 MPNFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTVR
::::.:.::. ::::.::::.::::.::::.:::::::: :::.:.:: ::::::::::
NP_001 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVR
10 20 30 40 50 60
70 80 90 100 110
pF1KE6 TTEINFKVGEGFEEETVDGRKCRSLATWENENKIHCTQTLLEGDGPKTYWTSELAND-EL
:::::::::: :::.::::: :.::. ::.:::. : : ::.:.:::: :: ::.:: ::
NP_001 TTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGEL
70 80 90 100 110 120
120 130
pF1KE6 ILTFGADDVVCTRIYVRE
:::. ::::::::.::::
NP_001 ILTMTADDVVCTRVYVRE
130
>>NP_002890 (OMIM: 180260) retinol-binding protein 1 iso (197 aa)
initn: 184 init1: 132 opt: 334 Z-score: 464.5 bits: 92.2 E(85289): 3.9e-19
Smith-Waterman score: 334; 40.9% identity (68.6% similar) in 137 aa overlap (1-134:63-193)
10 20
pF1KE6 MP-NFAGTWKMRSSENFDELLKALGVNAML
:: .:.: ::: .:::.: :.:: ::. :
NP_002 HHPRSTGSRCPGSLQPSRPLVANWLQSLPEMPVDFTGYWKMLVNENFEEYLRALDVNVAL
40 50 60 70 80 90
30 40 50 60 70 80
pF1KE6 RKVAVAAASKPHVEIRQDGDQFYIKTSTTVRTTEINFKVGEGFEEET--VDGRKCRSLAT
::.: :: :: ::::.. :.: .: :. ..:.::. :::. .: ::: . ..
NP_002 RKIA--NLLKPDKEIVQDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMTTVS
100 110 120 130 140 150
90 100 110 120 130
pF1KE6 WENENKIHCTQTLLEGDGPKTYWTSELANDELILTFGADDVVCTRIYVRE
:... :..:.: .:. ::. . .::: : . .. ::: ...
NP_002 WDGD-KLQCVQ---KGEKEGRGWTQWIEGDELHLEMRVEGVVCKQVFKKVQ
160 170 180 190
>>NP_001437 (OMIM: 602965) fatty acid-binding protein, b (132 aa)
initn: 341 init1: 173 opt: 318 Z-score: 445.2 bits: 88.1 E(85289): 4.6e-18
Smith-Waterman score: 318; 38.2% identity (71.8% similar) in 131 aa overlap (4-134:5-129)
10 20 30 40 50
pF1KE6 MPNFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTV
: .:::. .:.:::: .:::::. :.:. ..:: : : :.::. :.: .:
NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVG--NVTKPTVIISQEGDKVVIRTLSTF
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 RTTEINFKVGEGFEEETVDGRKCRSLATWENENKIHCTQTLLEGDGPKTYWTSELANDEL
..:::.:..:: :.: :.: :.:.:... .... .: . . :: .: .. :. . ..
NP_001 KNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVH----IQKWDGKETNFVREIKDGKM
60 70 80 90 100 110
120 130
pF1KE6 ILTFGADDVVCTRIYVRE
..:. ::: .: :
NP_001 VMTLTFGDVVAVRHYEKA
120 130
>>NP_004093 (OMIM: 134651) fatty acid-binding protein, h (133 aa)
initn: 322 init1: 152 opt: 317 Z-score: 443.8 bits: 87.9 E(85289): 5.5e-18
Smith-Waterman score: 317; 41.0% identity (69.4% similar) in 134 aa overlap (4-137:5-132)
10 20 30 40 50
pF1KE6 MPNFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTV
: ::::. .:.:::. .:.:::. :.:: . .:: . :...:: . .:: .:
NP_004 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVA--SMTKPTTIIEKNGDILTLKTHSTF
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 RTTEINFKVGEGFEEETVDGRKCRSLATWENENKIHCTQTLLEGDGPKTYWTSELANDEL
..:::.::.: :.: :.: :: .:..: .. . .: : . :: .: . :: . .:
NP_004 KNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVH----LQKWDGQETTLVRELIDGKL
60 70 80 90 100 110
120 130
pF1KE6 ILTFGADDVVCTRIYVRE
:::. .:::: : .:
NP_004 ILTLTHGTAVCTRTYEKEA
120 130
>>NP_002668 (OMIM: 170715) myelin P2 protein [Homo sapie (132 aa)
initn: 310 init1: 150 opt: 307 Z-score: 430.2 bits: 85.3 E(85289): 3.2e-17
Smith-Waterman score: 307; 43.0% identity (67.4% similar) in 135 aa overlap (1-134:1-129)
10 20 30 40 50
pF1KE6 MPN-FAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTV
: : : ::::. ::::::. .:::::. ::.. : :: : : . :: . :.: .:
NP_002 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLA--KPTVIISKKGDIITIRTESTF
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 RTTEINFKVGEGFEEETVDGRKCRSLATWENENKIHCTQTLLEGDGPKTYWTSELANDEL
..:::.::.:. ::: :.:.:: .:..: . ..... .: :: .: .:.: ..
NP_002 KNTEISFKLGQEFEETTADNRKTKSIVTLQ-RGSLNQVQRW---DGKETTIKRKLVNGKM
60 70 80 90 100 110
120 130
pF1KE6 ILTFGADDVVCTRIYVRE
. :::::::
NP_002 VAECKMKGVVCTRIYEKV
120 130
>>NP_443192 (OMIM: 608604) retinoid-binding protein 7 [H (134 aa)
initn: 304 init1: 145 opt: 305 Z-score: 427.4 bits: 84.8 E(85289): 4.6e-17
Smith-Waterman score: 305; 36.7% identity (67.6% similar) in 139 aa overlap (1-136:1-133)
10 20 30 40 50
pF1KE6 MP-NFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTV
:: ...::: . ::.::. . :::.. ::. : ::. :.:.::.: :.:....
NP_443 MPADLSGTWTLLSSDNFEGYMLALGIDFATRKI--AKLLKPQKVIEQNGDSFTIHTNSSL
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 RTTEINFKVGEGFEEET--VDGRKCRSLATWENENKIHCTQTLLEGDGPKTYWTSELAND
:. ..::::: :.:.. .:.:::.::. :.:. .. : : .:. . :: . .:
NP_443 RNYFVKFKVGEEFDEDNRGLDNRKCKSLVIWDND-RLTCIQ---KGEKKNRGWTHWIEGD
60 70 80 90 100 110
120 130
pF1KE6 ELILTFGADDVVCTRIYVRE
.: : . . :: . . :
NP_443 KLHLEMFCEGQVCKQTFQRA
120 130
>>NP_113679 (OMIM: 611866) retinol-binding protein 5 iso (135 aa)
initn: 172 init1: 160 opt: 296 Z-score: 415.1 bits: 82.6 E(85289): 2.2e-16
Smith-Waterman score: 296; 34.8% identity (71.1% similar) in 135 aa overlap (2-134:3-131)
10 20 30 40 50
pF1KE6 MPNFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTV
::..: ... :..:... :.::... .::.:. :: ::...:... ..: .:
NP_113 MPPNLTGYYRFVSQKNMEDYLQALNISLAVRKIALLL--KPDKEIEHQGNHMTVRTLSTF
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 RTTEINFKVGEGFEEE--TVDGRKCRSLATWENENKIHCTQTLLEGDGPKTYWTSELAND
:. ..: :: :::. .::::::....:::.:. . :.: .:. :. : : ..
NP_113 RNYTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLV-CVQ---KGEVPNRGWRHWLEGE
60 70 80 90 100 110
120 130
pF1KE6 ELILTFGADDVVCTRIYVRE
: : . : :.:: ...
NP_113 MLYLELTARDAVCEQVFRKVR
120 130
137 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 09:53:26 2016 done: Tue Nov 8 09:53:27 2016
Total Scan time: 3.290 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]