FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6423, 465 aa
  1>>>pF1KE6423 465 - 465 aa - 465 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2402+/-0.000787; mu= 14.9966+/- 0.048
 mean_var=108.5171+/-21.941, 0's: 0 Z-trim(110.5): 30  B-trim: 0 in 0/54
 Lambda= 0.123119
 statistics sampled from 11610 (11635) to 11610 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.357), width:  16
 Scan time:  2.150

The best scores are:                                      opt bits E(32554)
CCDS5331.1 SNX8 gene_id:29886|Hs108|chr7           ( 465) 3069 555.7 3.7e-158


>>CCDS5331.1 SNX8 gene_id:29886|Hs108|chr7                (465 aa)
 initn: 3069 init1: 3069 opt: 3069  Z-score: 2952.9  bits: 555.7 E(32554): 3.7e-158
Smith-Waterman score: 3069; 100.0% identity (100.0% similar) in 465 aa overlap (1-465:1-465)

               10        20        30        40        50        60
pF1KE6 MTGRAMDPLPAAAVGAAAEAEADEEADPPASDLPTPQAIEPQAIVQQVPAPSRMQMPQGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MTGRAMDPLPAAAVGAAAEAEADEEADPPASDLPTPQAIEPQAIVQQVPAPSRMQMPQGN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 PLLLSHTLQELLARDTVQVELIPEKKGLFLKHVEYEVSSQRFKSSVYRRYNDFVVFQEML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PLLLSHTLQELLARDTVQVELIPEKKGLFLKHVEYEVSSQRFKSSVYRRYNDFVVFQEML
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 LHKFPYRMVPALPPKRMLGADREFIEARRRALKRFVNLVARHPLFSEDVVLKLFLSFSGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LHKFPYRMVPALPPKRMLGADREFIEARRRALKRFVNLVARHPLFSEDVVLKLFLSFSGS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 DVQNKLKESAQCVGDEFLNCKLATRAKDFLPADIQAQFAISRELIRNIYNSFHKLRDRAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DVQNKLKESAQCVGDEFLNCKLATRAKDFLPADIQAQFAISRELIRNIYNSFHKLRDRAE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 RIASRAIDNAADLLIFGKELSAIGSDTTPLPSWAALNSSTWGSLKQALKGLSVEFALLAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 RIASRAIDNAADLLIFGKELSAIGSDTTPLPSWAALNSSTWGSLKQALKGLSVEFALLAD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 KAAQQGKQEENDVVEKLNLFLDLLQSYKDLCERHEKGVLHKHQRALHKYSLMKRQMMSAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KAAQQGKQEENDVVEKLNLFLDLLQSYKDLCERHEKGVLHKHQRALHKYSLMKRQMMSAT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE6 AQNREPESVEQLESRIVEQENAIQTMELRNYFSLYCLHQETQLIHVYLPLTSHILRAFVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 AQNREPESVEQLESRIVEQENAIQTMELRNYFSLYCLHQETQLIHVYLPLTSHILRAFVN
              370       380       390       400       410       420

              430       440       450       460     
pF1KE6 SQIQGHKEMSKVWNDLRPKLSCLFAGPHSTLTPPCSPPEDGLCPH
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SQIQGHKEMSKVWNDLRPKLSCLFAGPHSTLTPPCSPPEDGLCPH
              430       440       450       460     




465 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 13:08:55 2016 done: Tue Nov  8 13:08:56 2016
 Total Scan time:  2.150 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]