FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1448, 363 aa 1>>>pF1KE1448 363 - 363 aa - 363 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1038+/-0.000334; mu= 17.5174+/- 0.021 mean_var=63.4040+/-12.926, 0's: 0 Z-trim(114.2): 13 B-trim: 11 in 1/53 Lambda= 0.161070 statistics sampled from 23961 (23973) to 23961 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.669), E-opt: 0.2 (0.281), width: 16 Scan time: 6.130 The best scores are: opt bits E(85289) NP_060084 (OMIM: 605932) S-methylmethionine--homoc ( 363) 2508 591.4 1e-168 NP_001704 (OMIM: 602888) betaine--homocysteine S-m ( 406) 1545 367.7 2.6e-101 NP_001171476 (OMIM: 605932) S-methylmethionine--ho ( 299) 1525 362.9 5.2e-100 >>NP_060084 (OMIM: 605932) S-methylmethionine--homocyste (363 aa) initn: 2508 init1: 2508 opt: 2508 Z-score: 3149.8 bits: 591.4 E(85289): 1e-168 Smith-Waterman score: 2508; 100.0% identity (100.0% similar) in 363 aa overlap (1-363:1-363) 10 20 30 40 50 60 pF1KE1 MAPAGRPGAKKGILERLESGEVVIGDGSFLITLEKRGYVKAGLWTPEAVIEHPDAVRQLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 MAPAGRPGAKKGILERLESGEVVIGDGSFLITLEKRGYVKAGLWTPEAVIEHPDAVRQLH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 MEFLRAGSNVMQTFTFSASEDNMESKWEDVNAAACDLAREVAGKGDALVAGGICQTSIYK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 MEFLRAGSNVMQTFTFSASEDNMESKWEDVNAAACDLAREVAGKGDALVAGGICQTSIYK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 YQKDEARIKKLFRQQLEVFAWKNVDFLIAEYFEHVEEAVWAVEVLKESDRPVAVTMCIGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 YQKDEARIKKLFRQQLEVFAWKNVDFLIAEYFEHVEEAVWAVEVLKESDRPVAVTMCIGP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 EGDMHDITPGECAVRLVKAGASIVGVNCRFGPDTSLKTMELMKEGLEWAGLKAHLMVQPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 EGDMHDITPGECAVRLVKAGASIVGVNCRFGPDTSLKTMELMKEGLEWAGLKAHLMVQPL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 GFHAPDCGKEGFVDLPEYPFGLESRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 GFHAPDCGKEGFVDLPEYPFGLESRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 IAEELAPERGFLPPASEKHGSWGSGLDMHTKPWIRARARREYWENLLPASGRPFCPSLSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 IAEELAPERGFLPPASEKHGSWGSGLDMHTKPWIRARARREYWENLLPASGRPFCPSLSK 310 320 330 340 350 360 pF1KE1 PDF ::: NP_060 PDF >>NP_001704 (OMIM: 602888) betaine--homocysteine S-methy (406 aa) initn: 1947 init1: 1545 opt: 1545 Z-score: 1939.7 bits: 367.7 E(85289): 2.6e-101 Smith-Waterman score: 1948; 76.0% identity (88.4% similar) in 371 aa overlap (1-362:1-371) 10 20 30 40 50 60 pF1KE1 MAPAGRPGAKKGILERLESGEVVIGDGSFLITLEKRGYVKAGLWTPEAVIEHPDAVRQLH : :.: :::::::::..::.:::::.:...:::::::::: :::::..:::.:::::: NP_001 MPPVGGKKAKKGILERLNAGEIVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 MEFLRAGSNVMQTFTFSASEDNMESKW---------EDVNAAACDLAREVAGKGDALVAG ::::::::::::::: ::::..:.. ..:: ::::.::.:: .::::::: NP_001 REFLRAGSNVMQTFTFYASEDKLENRGNYVLEKISGQEVNEAACDIARQVADEGDALVAG 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 GICQTSIYKYQKDEARIKKLFRQQLEVFAWKNVDFLIAEYFEHVEEAVWAVEVLKESDRP :. :: : :.:...::.: :::::: ::::::::::::::::::::::.: : .: NP_001 GVSQTPSYLSCKSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASGKP 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE1 VAVTMCIGPEGDMHDITPGECAVRLVKAGASIVGVNCRFGPDTSLKTMELMKEGLEWAGL ::.:::::::::.: . :::::::::::::::.::::.: : ::::..::::::: : : NP_001 VAATMCIGPEGDLHGVPPGECAVRLVKAGASIIGVNCHFDPTISLKTVKLMKEGLEAARL 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE1 KAHLMVQPLGFHAPDCGKEGFVDLPEYPFGLESRVATRWDIQKYAREAYNLGVRYIGGCC ::::: :::..:.:::.:.::.::::.::::: ::::::::::::::::::::::::::: NP_001 KAHLMSQPLAYHTPDCNKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC 250 260 270 280 290 300 300 310 320 330 340 350 pF1KE1 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDMHTKPWIRARARREYWENLLPASG ::::::::::::::::::::::::::::::::::::::::::.:::::.:::::: ::: NP_001 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDMHTKPWVRARARKEYWENLRIASG 310 320 330 340 350 360 360 pF1KE1 RPFCPSLSKPDF ::. ::.:::: NP_001 RPYNPSMSKPDGWGVTKGTAELMQQKEATTEQQLKELFEKQKFKSQ 370 380 390 400 >>NP_001171476 (OMIM: 605932) S-methylmethionine--homocy (299 aa) initn: 1522 init1: 1522 opt: 1525 Z-score: 1916.5 bits: 362.9 E(85289): 5.2e-100 Smith-Waterman score: 1943; 82.4% identity (82.4% similar) in 363 aa overlap (1-363:1-299) 10 20 30 40 50 60 pF1KE1 MAPAGRPGAKKGILERLESGEVVIGDGSFLITLEKRGYVKAGLWTPEAVIEHPDAVRQLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAPAGRPGAKKGILERLESGEVVIGDGSFLITLEKRGYVKAGLWTPEAVIEHPDAVRQLH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 MEFLRAGSNVMQTFTFSASEDNMESKWEDVNAAACDLAREVAGKGDALVAGGICQTSIYK :::::::::::::::::::::::::: NP_001 MEFLRAGSNVMQTFTFSASEDNMESK---------------------------------- 70 80 130 140 150 160 170 180 pF1KE1 YQKDEARIKKLFRQQLEVFAWKNVDFLIAEYFEHVEEAVWAVEVLKESDRPVAVTMCIGP :::::::::::::::::::::::::::::: NP_001 ------------------------------YFEHVEEAVWAVEVLKESDRPVAVTMCIGP 90 100 110 190 200 210 220 230 240 pF1KE1 EGDMHDITPGECAVRLVKAGASIVGVNCRFGPDTSLKTMELMKEGLEWAGLKAHLMVQPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EGDMHDITPGECAVRLVKAGASIVGVNCRFGPDTSLKTMELMKEGLEWAGLKAHLMVQPL 120 130 140 150 160 170 250 260 270 280 290 300 pF1KE1 GFHAPDCGKEGFVDLPEYPFGLESRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GFHAPDCGKEGFVDLPEYPFGLESRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRA 180 190 200 210 220 230 310 320 330 340 350 360 pF1KE1 IAEELAPERGFLPPASEKHGSWGSGLDMHTKPWIRARARREYWENLLPASGRPFCPSLSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IAEELAPERGFLPPASEKHGSWGSGLDMHTKPWIRARARREYWENLLPASGRPFCPSLSK 240 250 260 270 280 290 pF1KE1 PDF ::: NP_001 PDF 363 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 22:45:26 2016 done: Sun Nov 6 22:45:27 2016 Total Scan time: 6.130 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]