FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1448, 363 aa
  1>>>pF1KE1448 363 - 363 aa - 363 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4993+/-0.000739; mu= 15.1568+/- 0.044
 mean_var=61.5260+/-12.280, 0's: 0 Z-trim(107.8): 13  B-trim: 0 in 0/49
 Lambda= 0.163510
 statistics sampled from 9800 (9807) to 9800 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.301), width:  16
 Scan time:  2.210

The best scores are:                                      opt bits E(32554)
CCDS4045.1 BHMT2 gene_id:23743|Hs108|chr5          ( 363) 2508 600.0 1.1e-171
CCDS4046.1 BHMT gene_id:635|Hs108|chr5             ( 406) 1545 372.8 2.8e-103
CCDS54871.1 BHMT2 gene_id:23743|Hs108|chr5         ( 299) 1525 368.1 5.6e-102


>>CCDS4045.1 BHMT2 gene_id:23743|Hs108|chr5               (363 aa)
 initn: 2508 init1: 2508 opt: 2508  Z-score: 3196.1  bits: 600.0 E(32554): 1.1e-171
Smith-Waterman score: 2508; 100.0% identity (100.0% similar) in 363 aa overlap (1-363:1-363)

               10        20        30        40        50        60
pF1KE1 MAPAGRPGAKKGILERLESGEVVIGDGSFLITLEKRGYVKAGLWTPEAVIEHPDAVRQLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MAPAGRPGAKKGILERLESGEVVIGDGSFLITLEKRGYVKAGLWTPEAVIEHPDAVRQLH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 MEFLRAGSNVMQTFTFSASEDNMESKWEDVNAAACDLAREVAGKGDALVAGGICQTSIYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MEFLRAGSNVMQTFTFSASEDNMESKWEDVNAAACDLAREVAGKGDALVAGGICQTSIYK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 YQKDEARIKKLFRQQLEVFAWKNVDFLIAEYFEHVEEAVWAVEVLKESDRPVAVTMCIGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 YQKDEARIKKLFRQQLEVFAWKNVDFLIAEYFEHVEEAVWAVEVLKESDRPVAVTMCIGP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 EGDMHDITPGECAVRLVKAGASIVGVNCRFGPDTSLKTMELMKEGLEWAGLKAHLMVQPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 EGDMHDITPGECAVRLVKAGASIVGVNCRFGPDTSLKTMELMKEGLEWAGLKAHLMVQPL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 GFHAPDCGKEGFVDLPEYPFGLESRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 GFHAPDCGKEGFVDLPEYPFGLESRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 IAEELAPERGFLPPASEKHGSWGSGLDMHTKPWIRARARREYWENLLPASGRPFCPSLSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 IAEELAPERGFLPPASEKHGSWGSGLDMHTKPWIRARARREYWENLLPASGRPFCPSLSK
              310       320       330       340       350       360

          
pF1KE1 PDF
       :::
CCDS40 PDF
          

>>CCDS4046.1 BHMT gene_id:635|Hs108|chr5                  (406 aa)
 initn: 1947 init1: 1545 opt: 1545  Z-score: 1967.6  bits: 372.8 E(32554): 2.8e-103
Smith-Waterman score: 1948; 76.0% identity (88.4% similar) in 371 aa overlap (1-362:1-371)

               10        20        30        40        50        60
pF1KE1 MAPAGRPGAKKGILERLESGEVVIGDGSFLITLEKRGYVKAGLWTPEAVIEHPDAVRQLH
       : :.:   :::::::::..::.:::::.:...:::::::::: :::::..:::.::::::
CCDS40 MPPVGGKKAKKGILERLNAGEIVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLH
               10        20        30        40        50        60

               70        80                 90       100       110 
pF1KE1 MEFLRAGSNVMQTFTFSASEDNMESKW---------EDVNAAACDLAREVAGKGDALVAG
        ::::::::::::::: ::::..:..          ..:: ::::.::.:: .:::::::
CCDS40 REFLRAGSNVMQTFTFYASEDKLENRGNYVLEKISGQEVNEAACDIARQVADEGDALVAG
               70        80        90       100       110       120

             120       130       140       150       160       170 
pF1KE1 GICQTSIYKYQKDEARIKKLFRQQLEVFAWKNVDFLIAEYFEHVEEAVWAVEVLKESDRP
       :. ::  :   :.:...::.: ::::::  ::::::::::::::::::::::.:  : .:
CCDS40 GVSQTPSYLSCKSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASGKP
              130       140       150       160       170       180

             180       190       200       210       220       230 
pF1KE1 VAVTMCIGPEGDMHDITPGECAVRLVKAGASIVGVNCRFGPDTSLKTMELMKEGLEWAGL
       ::.:::::::::.: . :::::::::::::::.::::.: :  ::::..::::::: : :
CCDS40 VAATMCIGPEGDLHGVPPGECAVRLVKAGASIIGVNCHFDPTISLKTVKLMKEGLEAARL
              190       200       210       220       230       240

             240       250       260       270       280       290 
pF1KE1 KAHLMVQPLGFHAPDCGKEGFVDLPEYPFGLESRVATRWDIQKYAREAYNLGVRYIGGCC
       ::::: :::..:.:::.:.::.::::.::::: :::::::::::::::::::::::::::
CCDS40 KAHLMSQPLAYHTPDCNKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCC
              250       260       270       280       290       300

             300       310       320       330       340       350 
pF1KE1 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDMHTKPWIRARARREYWENLLPASG
       ::::::::::::::::::::::::::::::::::::::::::.:::::.::::::  :::
CCDS40 GFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDMHTKPWVRARARKEYWENLRIASG
              310       320       330       340       350       360

             360                                     
pF1KE1 RPFCPSLSKPDF                                  
       ::. ::.::::                                   
CCDS40 RPYNPSMSKPDGWGVTKGTAELMQQKEATTEQQLKELFEKQKFKSQ
              370       380       390       400      

>>CCDS54871.1 BHMT2 gene_id:23743|Hs108|chr5              (299 aa)
 initn: 1522 init1: 1522 opt: 1525  Z-score: 1944.3  bits: 368.1 E(32554): 5.6e-102
Smith-Waterman score: 1943; 82.4% identity (82.4% similar) in 363 aa overlap (1-363:1-299)

               10        20        30        40        50        60
pF1KE1 MAPAGRPGAKKGILERLESGEVVIGDGSFLITLEKRGYVKAGLWTPEAVIEHPDAVRQLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MAPAGRPGAKKGILERLESGEVVIGDGSFLITLEKRGYVKAGLWTPEAVIEHPDAVRQLH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 MEFLRAGSNVMQTFTFSASEDNMESKWEDVNAAACDLAREVAGKGDALVAGGICQTSIYK
       ::::::::::::::::::::::::::                                  
CCDS54 MEFLRAGSNVMQTFTFSASEDNMESK----------------------------------
               70        80                                        

              130       140       150       160       170       180
pF1KE1 YQKDEARIKKLFRQQLEVFAWKNVDFLIAEYFEHVEEAVWAVEVLKESDRPVAVTMCIGP
                                     ::::::::::::::::::::::::::::::
CCDS54 ------------------------------YFEHVEEAVWAVEVLKESDRPVAVTMCIGP
                                       90       100       110      

              190       200       210       220       230       240
pF1KE1 EGDMHDITPGECAVRLVKAGASIVGVNCRFGPDTSLKTMELMKEGLEWAGLKAHLMVQPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EGDMHDITPGECAVRLVKAGASIVGVNCRFGPDTSLKTMELMKEGLEWAGLKAHLMVQPL
        120       130       140       150       160       170      

              250       260       270       280       290       300
pF1KE1 GFHAPDCGKEGFVDLPEYPFGLESRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GFHAPDCGKEGFVDLPEYPFGLESRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRA
        180       190       200       210       220       230      

              310       320       330       340       350       360
pF1KE1 IAEELAPERGFLPPASEKHGSWGSGLDMHTKPWIRARARREYWENLLPASGRPFCPSLSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 IAEELAPERGFLPPASEKHGSWGSGLDMHTKPWIRARARREYWENLLPASGRPFCPSLSK
        240       250       260       270       280       290      

          
pF1KE1 PDF
       :::
CCDS54 PDF
          




363 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:45:26 2016 done: Sun Nov  6 22:45:26 2016
 Total Scan time:  2.210 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]