FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1331, 336 aa 1>>>pF1KE1331 336 - 336 aa - 336 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7700+/-0.000339; mu= 19.2172+/- 0.021 mean_var=70.7534+/-14.674, 0's: 0 Z-trim(115.7): 66 B-trim: 1493 in 1/49 Lambda= 0.152476 statistics sampled from 26203 (26271) to 26203 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.308), width: 16 Scan time: 7.430 The best scores are: opt bits E(85289) NP_002027 (OMIM: 110700,611162,611862,613665) atyp ( 336) 2273 509.0 5.8e-144 NP_001116423 (OMIM: 110700,611162,611862,613665) a ( 338) 2217 496.7 3e-140 NP_001287 (OMIM: 602648) atypical chemokine recept ( 384) 160 44.2 0.00053 >>NP_002027 (OMIM: 110700,611162,611862,613665) atypical (336 aa) initn: 2273 init1: 2273 opt: 2273 Z-score: 2705.6 bits: 509.0 E(85289): 5.8e-144 Smith-Waterman score: 2273; 99.7% identity (99.7% similar) in 336 aa overlap (1-336:1-336) 10 20 30 40 50 60 pF1KE1 MGNCLHRAELSPSTENSSQLDFEDVWNSSYGVNDSFPDGDYGANLEAAAPCHSCNLLDDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MGNCLHRAELSPSTENSSQLDFEDVWNSSYGVNDSFPDGDYGANLEAAAPCHSCNLLDDS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 ALPFFILTSVLGILASSTVLFMLFRPLFRWQLCPGWPVLAQLAVGSALFSIVVPVLAPGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 ALPFFILTSVLGILASSTVLFMLFRPLFRWQLCPGWPVLAQLAVGSALFSIVVPVLAPGL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 GSTRSSALCSLGYCVWYGSAFAQALLLGCHASLGHRLGAGQVPGLTLGLTVGIWGVAALL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 GSTRSSALCSLGYCVWYGSAFAQALLLGCHASLGHRLGAGQVPGLTLGLTVGIWGVAALL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 TLPVTLASGASGGLCTLIYSTELKALQATHTVACLAIFVLLPLGLFGAKGLKKALGMGPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 TLPVTLASGASGGLCTLIYSTELKALQATHTVACLAIFVLLPLGLFGAKGLKKALGMGPG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 PWMNILWAWFIFWWPHGVVLGLDFLVRSKLLLLSTCLAQQALDLLLNLAEALAILHCVAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 PWMNILWAWFIFWWPHGVVLGLDFLVRSKLLLLSTCLAQQALDLLLNLAEALAILHCVAT 250 260 270 280 290 300 310 320 330 pF1KE1 PLLLALFCHQATRTLLPSLPLPEGWFSHLDTLGSKS ::::::::::::::::::::::::: :::::::::: NP_002 PLLLALFCHQATRTLLPSLPLPEGWSSHLDTLGSKS 310 320 330 >>NP_001116423 (OMIM: 110700,611162,611862,613665) atypi (338 aa) initn: 2217 init1: 2217 opt: 2217 Z-score: 2639.0 bits: 496.7 E(85289): 3e-140 Smith-Waterman score: 2217; 99.4% identity (99.7% similar) in 330 aa overlap (7-336:9-338) 10 20 30 40 50 pF1KE1 MGNCLHRAELSPSTENSSQLDFEDVWNSSYGVNDSFPDGDYGANLEAAAPCHSCNLLD .::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MASSGYVLQAELSPSTENSSQLDFEDVWNSSYGVNDSFPDGDYGANLEAAAPCHSCNLLD 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 DSALPFFILTSVLGILASSTVLFMLFRPLFRWQLCPGWPVLAQLAVGSALFSIVVPVLAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DSALPFFILTSVLGILASSTVLFMLFRPLFRWQLCPGWPVLAQLAVGSALFSIVVPVLAP 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 GLGSTRSSALCSLGYCVWYGSAFAQALLLGCHASLGHRLGAGQVPGLTLGLTVGIWGVAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GLGSTRSSALCSLGYCVWYGSAFAQALLLGCHASLGHRLGAGQVPGLTLGLTVGIWGVAA 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE1 LLTLPVTLASGASGGLCTLIYSTELKALQATHTVACLAIFVLLPLGLFGAKGLKKALGMG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LLTLPVTLASGASGGLCTLIYSTELKALQATHTVACLAIFVLLPLGLFGAKGLKKALGMG 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE1 PGPWMNILWAWFIFWWPHGVVLGLDFLVRSKLLLLSTCLAQQALDLLLNLAEALAILHCV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PGPWMNILWAWFIFWWPHGVVLGLDFLVRSKLLLLSTCLAQQALDLLLNLAEALAILHCV 250 260 270 280 290 300 300 310 320 330 pF1KE1 ATPLLLALFCHQATRTLLPSLPLPEGWFSHLDTLGSKS ::::::::::::::::::::::::::: :::::::::: NP_001 ATPLLLALFCHQATRTLLPSLPLPEGWSSHLDTLGSKS 310 320 330 >>NP_001287 (OMIM: 602648) atypical chemokine receptor 2 (384 aa) initn: 117 init1: 117 opt: 160 Z-score: 192.8 bits: 44.2 E(85289): 0.00053 Smith-Waterman score: 199; 25.0% identity (54.3% similar) in 300 aa overlap (62-329:49-335) 40 50 60 70 80 90 pF1KE1 VNDSFPDGDYGANLEAAAPCHSCNLLDDSALP-FFILTSVLGILASSTVLFMLFRPLFRW :: :. : :::. .. .:..:.: . : NP_001 NSSFYYYDYLDEVAFMLCRKDAVVSFGKVFLPVFYSLIFVLGLSGNLLLLMVLLRYVPRR 20 30 40 50 60 70 100 110 120 130 140 pF1KE1 QLCPGWPVLAQLAVGSALFSIVVPVLAPGLGS--TRSSALCSLGYCVWYGSAFAQALLLG .. . : .::... :: ...: . ... . .: ::.. .. . .. .... NP_001 RMVEIY--LLNLAISNLLFLVTLPFWGISVAWHWVFGSFLCKMVSTLYTINFYSGIFFIS 80 90 100 110 120 130 150 160 170 180 190 pF1KE1 C----------HASLGHRLGAGQVPGLTLGLTVGIWGVAALLTLP----VTLASGASG-- : ::. ::: .. . .: :.. .:.:. ...: : . .: NP_001 CMSLDKYLEIVHAQPYHRL---RTRAKSLLLATIVWAVSLAVSIPDMVFVQTHENPKGVW 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 ------GLCTLIYSTELKALQAT--HTVACLA-IFVLLPLGLFGAKGLKKALGMGPGPWM : :.. :. : . :: :: .: .. :. : : : . NP_001 NCHADFGGHGTIWKLFLRFQQNLLGFLLPLLAMIFFYSRIGCVLVR-LRPA---GQGRAL 200 210 220 230 240 250 260 270 280 290 pF1KE1 NI----LWAWFIFWWPHGVVLGLDFLVRSKLLLLSTCLAQQALDLLLNLAEALAILHCVA .: . :.:..:.:....: : :. : ....: ..: :: :...:..:.::: NP_001 KIAAALVVAFFVLWFPYNLTLFLHTLL--DLQVFGNCEVSQHLDYALQVTESIAFLHCCF 250 260 270 280 290 300 300 310 320 330 pF1KE1 TPLLLALFCHQATRTLLPSLPLPEGWFSHLDTLGSKS .:.: :. :. . : : :: :: NP_001 SPILYAFSSHRFRQYLKAFLAAVLGW--HLAPGTAQASLSSCSESSILTAQEEMTGMNDL 310 320 330 340 350 360 336 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 22:47:49 2016 done: Sun Nov 6 22:47:50 2016 Total Scan time: 7.430 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]