FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1331, 336 aa
  1>>>pF1KE1331 336 - 336 aa - 336 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5448+/-0.000734; mu= 14.8123+/- 0.044
 mean_var=71.0838+/-14.593, 0's: 0 Z-trim(109.6): 36  B-trim: 631 in 1/48
 Lambda= 0.152121
 statistics sampled from 10945 (10975) to 10945 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.337), width:  16
 Scan time:  2.720

The best scores are:                                      opt bits E(32554)
CCDS1183.1 ACKR1 gene_id:2532|Hs108|chr1           ( 336) 2273 507.7 5.4e-144
CCDS44252.1 ACKR1 gene_id:2532|Hs108|chr1          ( 338) 2217 495.4 2.7e-140


>>CCDS1183.1 ACKR1 gene_id:2532|Hs108|chr1                (336 aa)
 initn: 2273 init1: 2273 opt: 2273  Z-score: 2698.6  bits: 507.7 E(32554): 5.4e-144
Smith-Waterman score: 2273; 99.7% identity (99.7% similar) in 336 aa overlap (1-336:1-336)

               10        20        30        40        50        60
pF1KE1 MGNCLHRAELSPSTENSSQLDFEDVWNSSYGVNDSFPDGDYGANLEAAAPCHSCNLLDDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MGNCLHRAELSPSTENSSQLDFEDVWNSSYGVNDSFPDGDYGANLEAAAPCHSCNLLDDS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 ALPFFILTSVLGILASSTVLFMLFRPLFRWQLCPGWPVLAQLAVGSALFSIVVPVLAPGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ALPFFILTSVLGILASSTVLFMLFRPLFRWQLCPGWPVLAQLAVGSALFSIVVPVLAPGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 GSTRSSALCSLGYCVWYGSAFAQALLLGCHASLGHRLGAGQVPGLTLGLTVGIWGVAALL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GSTRSSALCSLGYCVWYGSAFAQALLLGCHASLGHRLGAGQVPGLTLGLTVGIWGVAALL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 TLPVTLASGASGGLCTLIYSTELKALQATHTVACLAIFVLLPLGLFGAKGLKKALGMGPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TLPVTLASGASGGLCTLIYSTELKALQATHTVACLAIFVLLPLGLFGAKGLKKALGMGPG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 PWMNILWAWFIFWWPHGVVLGLDFLVRSKLLLLSTCLAQQALDLLLNLAEALAILHCVAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PWMNILWAWFIFWWPHGVVLGLDFLVRSKLLLLSTCLAQQALDLLLNLAEALAILHCVAT
              250       260       270       280       290       300

              310       320       330      
pF1KE1 PLLLALFCHQATRTLLPSLPLPEGWFSHLDTLGSKS
       ::::::::::::::::::::::::: ::::::::::
CCDS11 PLLLALFCHQATRTLLPSLPLPEGWSSHLDTLGSKS
              310       320       330      

>>CCDS44252.1 ACKR1 gene_id:2532|Hs108|chr1               (338 aa)
 initn: 2217 init1: 2217 opt: 2217  Z-score: 2632.2  bits: 495.4 E(32554): 2.7e-140
Smith-Waterman score: 2217; 99.4% identity (99.7% similar) in 330 aa overlap (7-336:9-338)

                 10        20        30        40        50        
pF1KE1   MGNCLHRAELSPSTENSSQLDFEDVWNSSYGVNDSFPDGDYGANLEAAAPCHSCNLLD
               .:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MASSGYVLQAELSPSTENSSQLDFEDVWNSSYGVNDSFPDGDYGANLEAAAPCHSCNLLD
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KE1 DSALPFFILTSVLGILASSTVLFMLFRPLFRWQLCPGWPVLAQLAVGSALFSIVVPVLAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DSALPFFILTSVLGILASSTVLFMLFRPLFRWQLCPGWPVLAQLAVGSALFSIVVPVLAP
               70        80        90       100       110       120

      120       130       140       150       160       170        
pF1KE1 GLGSTRSSALCSLGYCVWYGSAFAQALLLGCHASLGHRLGAGQVPGLTLGLTVGIWGVAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GLGSTRSSALCSLGYCVWYGSAFAQALLLGCHASLGHRLGAGQVPGLTLGLTVGIWGVAA
              130       140       150       160       170       180

      180       190       200       210       220       230        
pF1KE1 LLTLPVTLASGASGGLCTLIYSTELKALQATHTVACLAIFVLLPLGLFGAKGLKKALGMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LLTLPVTLASGASGGLCTLIYSTELKALQATHTVACLAIFVLLPLGLFGAKGLKKALGMG
              190       200       210       220       230       240

      240       250       260       270       280       290        
pF1KE1 PGPWMNILWAWFIFWWPHGVVLGLDFLVRSKLLLLSTCLAQQALDLLLNLAEALAILHCV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PGPWMNILWAWFIFWWPHGVVLGLDFLVRSKLLLLSTCLAQQALDLLLNLAEALAILHCV
              250       260       270       280       290       300

      300       310       320       330      
pF1KE1 ATPLLLALFCHQATRTLLPSLPLPEGWFSHLDTLGSKS
       ::::::::::::::::::::::::::: ::::::::::
CCDS44 ATPLLLALFCHQATRTLLPSLPLPEGWSSHLDTLGSKS
              310       320       330        




336 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:47:48 2016 done: Sun Nov  6 22:47:49 2016
 Total Scan time:  2.720 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]