FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3601, 179 aa 1>>>pF1KE3601 179 - 179 aa - 179 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9696+/-0.000681; mu= 15.2125+/- 0.041 mean_var=61.8824+/-12.365, 0's: 0 Z-trim(110.1): 66 B-trim: 212 in 1/50 Lambda= 0.163039 statistics sampled from 11286 (11354) to 11286 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.738), E-opt: 0.2 (0.349), width: 16 Scan time: 2.010 The best scores are: opt bits E(32554) CCDS13370.1 UBE2C gene_id:11065|Hs108|chr20 ( 179) 1197 289.2 8.9e-79 CCDS13374.1 UBE2C gene_id:11065|Hs108|chr20 ( 140) 947 230.4 3.7e-61 CCDS13372.1 UBE2C gene_id:11065|Hs108|chr20 ( 150) 724 177.9 2.4e-45 CCDS13371.1 UBE2C gene_id:11065|Hs108|chr20 ( 161) 483 121.3 3e-28 CCDS74733.1 UBE2C gene_id:11065|Hs108|chr20 ( 79) 473 118.7 8.5e-28 CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 ( 152) 411 104.3 3.5e-23 CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX ( 152) 408 103.6 5.8e-23 CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12 ( 152) 366 93.7 5.4e-20 CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 147) 362 92.8 1e-19 CCDS78500.1 UBE2A gene_id:7319|Hs108|chrX ( 119) 356 91.3 2.3e-19 CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 ( 147) 356 91.4 2.7e-19 CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 147) 347 89.2 1.2e-18 CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 147) 345 88.8 1.6e-18 CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 148) 345 88.8 1.6e-18 CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2 ( 207) 340 87.7 4.8e-18 CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 149) 337 86.9 6e-18 CCDS2637.1 UBE2E2 gene_id:7325|Hs108|chr3 ( 201) 338 87.2 6.5e-18 CCDS56244.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 160) 330 85.3 2e-17 CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 193) 325 84.1 5.3e-17 CCDS1425.1 UBE2T gene_id:29089|Hs108|chr1 ( 197) 323 83.7 7.4e-17 CCDS33976.1 UBE2K gene_id:3093|Hs108|chr4 ( 200) 309 80.4 7.4e-16 CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 118) 304 79.1 1.1e-15 CCDS75172.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 118) 303 78.8 1.3e-15 CCDS12987.1 UBE2M gene_id:9040|Hs108|chr19 ( 183) 305 79.4 1.3e-15 CCDS627.1 UBE2U gene_id:148581|Hs108|chr1 ( 226) 303 79.0 2.2e-15 CCDS2639.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 176) 294 76.8 7.7e-15 CCDS5814.1 UBE2H gene_id:7328|Hs108|chr7 ( 183) 286 75.0 2.9e-14 CCDS47043.1 UBE2K gene_id:3093|Hs108|chr4 ( 157) 284 74.4 3.6e-14 CCDS74734.1 UBE2C gene_id:11065|Hs108|chr20 ( 132) 279 73.2 7e-14 CCDS33114.1 UBE2S gene_id:27338|Hs108|chr19 ( 222) 277 72.9 1.5e-13 CCDS73139.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 109) 273 71.8 1.6e-13 CCDS10433.1 UBE2I gene_id:7329|Hs108|chr16 ( 158) 274 72.1 1.8e-13 CCDS47874.2 UBE2W gene_id:55284|Hs108|chr8 ( 180) 267 70.5 6.4e-13 CCDS47875.2 UBE2W gene_id:55284|Hs108|chr8 ( 191) 263 69.6 1.3e-12 CCDS13790.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 154) 243 64.8 2.8e-11 >>CCDS13370.1 UBE2C gene_id:11065|Hs108|chr20 (179 aa) initn: 1197 init1: 1197 opt: 1197 Z-score: 1527.7 bits: 289.2 E(32554): 8.9e-79 Smith-Waterman score: 1197; 100.0% identity (100.0% similar) in 179 aa overlap (1-179:1-179) 10 20 30 40 50 60 pF1KE3 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 KWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 KWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKE 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 KWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETYSKQVTSQEP ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 KWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETYSKQVTSQEP 130 140 150 160 170 >>CCDS13374.1 UBE2C gene_id:11065|Hs108|chr20 (140 aa) initn: 947 init1: 947 opt: 947 Z-score: 1211.5 bits: 230.4 E(32554): 3.7e-61 Smith-Waterman score: 947; 100.0% identity (100.0% similar) in 140 aa overlap (40-179:1-140) 10 20 30 40 50 60 pF1KE3 ATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGA :::::::::::::::::::::::::::::: CCDS13 MTLMMSGDKGISAFPESDNLFKWVGTIHGA 10 20 30 70 80 90 100 110 120 pF1KE3 AGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKWSALYDVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 AGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKWSALYDVR 40 50 60 70 80 90 130 140 150 160 170 pF1KE3 TILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETYSKQVTSQEP :::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 TILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETYSKQVTSQEP 100 110 120 130 140 >>CCDS13372.1 UBE2C gene_id:11065|Hs108|chr20 (150 aa) initn: 985 init1: 724 opt: 724 Z-score: 927.6 bits: 177.9 E(32554): 2.4e-45 Smith-Waterman score: 930; 83.8% identity (83.8% similar) in 179 aa overlap (1-179:1-150) 10 20 30 40 50 60 pF1KE3 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLF ::::::::::::::::::::::::::::::::::::::::::: CCDS13 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLM----------------- 10 20 30 40 70 80 90 100 110 120 pF1KE3 KWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKE :::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 ------------VYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKE 50 60 70 80 90 130 140 150 160 170 pF1KE3 KWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETYSKQVTSQEP ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 KWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETYSKQVTSQEP 100 110 120 130 140 150 >>CCDS13371.1 UBE2C gene_id:11065|Hs108|chr20 (161 aa) initn: 732 init1: 483 opt: 483 Z-score: 620.8 bits: 121.3 E(32554): 3e-28 Smith-Waterman score: 714; 67.6% identity (76.9% similar) in 182 aa overlap (1-179:1-161) 10 20 30 40 50 60 pF1KE3 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 KWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKE ::::::::::::. ..: . .. . :: . . : :. CCDS13 KWVGTIHGAAGTAVGSIRTSSTVCLLSGPRETQDSSKPLV-------------------- 70 80 90 100 130 140 150 160 170 pF1KE3 KWSALYDVRTIL-LSIQSLLG--EPNIDSPLNTHAAELWKNPTAFKKYLQETYSKQVTSQ :. .:.: .: :..: .: ::::::::::::::::::::::::::::::::::::: CCDS13 -WGLGWDMRLLLELTLQLFLQMPEPNIDSPLNTHAAELWKNPTAFKKYLQETYSKQVTSQ 110 120 130 140 150 pF1KE3 EP :: CCDS13 EP 160 >>CCDS74733.1 UBE2C gene_id:11065|Hs108|chr20 (79 aa) initn: 473 init1: 473 opt: 473 Z-score: 612.6 bits: 118.7 E(32554): 8.5e-28 Smith-Waterman score: 473; 100.0% identity (100.0% similar) in 72 aa overlap (1-72:1-72) 10 20 30 40 50 60 pF1KE3 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 KWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKE :::::::::::: CCDS74 KWVGTIHGAAGTNPTLIVP 70 >>CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 (152 aa) initn: 346 init1: 331 opt: 411 Z-score: 529.6 bits: 104.3 E(32554): 3.5e-23 Smith-Waterman score: 411; 44.9% identity (72.8% similar) in 136 aa overlap (30-164:4-139) 10 20 30 40 50 60 pF1KE3 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLF :. .::.... :. . :.:. : .:.. CCDS41 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIM 10 20 30 70 80 90 100 110 120 pF1KE3 KWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKE .: ..: : :: .:: .:: .:: :: . :::.::. .:::: ..:.::::::.. CCDS41 QWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQN 40 50 60 70 80 90 130 140 150 160 170 pF1KE3 KWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK-NPTAFKKYLQETYSKQVTSQEP .:: ::: .:: :::::: ::: .:: :..::.:.. : ..: CCDS41 RWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSWNDS 100 110 120 130 140 150 >>CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX (152 aa) initn: 347 init1: 331 opt: 408 Z-score: 525.8 bits: 103.6 E(32554): 5.8e-23 Smith-Waterman score: 408; 44.1% identity (72.8% similar) in 136 aa overlap (30-164:4-139) 10 20 30 40 50 60 pF1KE3 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLF :. .::.... :. . :.:. : .:.. CCDS14 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIM 10 20 30 70 80 90 100 110 120 pF1KE3 KWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKE : ..: : :: .:: .::..:: :: . :::.:.. .:::: ..:.::::::.. CCDS14 VWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQN 40 50 60 70 80 90 130 140 150 160 170 pF1KE3 KWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK-NPTAFKKYLQETYSKQVTSQEP .:: ::: .:: :::::: ::: .:: :..::.:.. : ..: CCDS14 RWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSWRDC 100 110 120 130 140 150 >>CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12 (152 aa) initn: 351 init1: 318 opt: 366 Z-score: 472.4 bits: 93.7 E(32554): 5.4e-20 Smith-Waterman score: 366; 45.0% identity (65.9% similar) in 129 aa overlap (33-161:6-134) 10 20 30 40 50 60 pF1KE3 SQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKW .:. .: . :. ::.: :. .: . CCDS31 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYF 10 20 30 70 80 90 100 110 120 pF1KE3 VGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKW .: : . .: .:: : .: ::. :: :.:.: :::::: : :::::::.:: CCDS31 HVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKW 40 50 60 70 80 90 130 140 150 160 170 pF1KE3 SALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETYSKQVTSQEP : ..::.:::::.::. :: :.:: . .:: ::. : CCDS31 SPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI 100 110 120 130 140 150 >>CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 (147 aa) initn: 349 init1: 349 opt: 362 Z-score: 467.5 bits: 92.8 E(32554): 1e-19 Smith-Waterman score: 362; 39.0% identity (66.7% similar) in 141 aa overlap (33-172:4-144) 10 20 30 40 50 60 pF1KE3 SQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKW ::.:.:: :. . :: : .:.::.: CCDS72 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHW 10 20 30 70 80 90 100 110 120 pF1KE3 VGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKW .:: : ..:. . :...::. ::.. : . : : ::::....:.::::::. .: CCDS72 QATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQW 40 50 60 70 80 90 130 140 150 160 170 pF1KE3 SALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK-NPTAFKKYLQETYSKQVTSQEP : : .:::: ::: .:: :.:: :...: . .... .: .: CCDS72 SPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 100 110 120 130 140 >>CCDS78500.1 UBE2A gene_id:7319|Hs108|chrX (119 aa) initn: 331 init1: 331 opt: 356 Z-score: 461.2 bits: 91.3 E(32554): 2.3e-19 Smith-Waterman score: 356; 50.0% identity (75.0% similar) in 104 aa overlap (62-164:3-106) 40 50 60 70 80 90 pF1KE3 GKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPY : ..: : :: .:: .::..:: :: CCDS78 MVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPN 10 20 30 100 110 120 130 140 150 pF1KE3 NAPTVKFLTPCYHPNVDTQGNICLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTH . :::.:.. .:::: ..:.::::::...:: ::: .:: :::::: ::: .:: :.. CCDS78 KPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQ 40 50 60 70 80 90 160 170 pF1KE3 AAELWK-NPTAFKKYLQETYSKQVTSQEP ::.:.. : ..: CCDS78 AAQLYQENKREYEKRVSAIVEQSWRDC 100 110 179 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 22:49:27 2016 done: Sun Nov 6 22:49:27 2016 Total Scan time: 2.010 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]