FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1339, 520 aa 1>>>pF1KE1339 520 - 520 aa - 520 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.4976+/-0.000492; mu= -0.8187+/- 0.031 mean_var=489.7052+/-100.228, 0's: 0 Z-trim(121.3): 558 B-trim: 42 in 1/60 Lambda= 0.057957 statistics sampled from 37151 (37729) to 37151 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.442), width: 16 Scan time: 11.780 The best scores are: opt bits E(85289) XP_011510384 (OMIM: 604870) PREDICTED: macrophage ( 520) 3627 317.9 4.6e-86 NP_006761 (OMIM: 604870) macrophage receptor MARCO ( 520) 3627 317.9 4.6e-86 XP_011510385 (OMIM: 604870) PREDICTED: macrophage ( 399) 2645 235.6 2.1e-61 XP_016860660 (OMIM: 604870) PREDICTED: macrophage ( 322) 1774 162.7 1.5e-39 NP_000081 (OMIM: 120180,130020,130050) collagen al (1466) 944 94.2 3e-18 XP_011526344 (OMIM: 120216) PREDICTED: collagen al (1744) 907 91.2 2.8e-17 NP_056534 (OMIM: 120216) collagen alpha-3(V) chain (1745) 907 91.2 2.8e-17 NP_001281276 (OMIM: 120252,136800,609140) collagen ( 638) 889 89.1 4.3e-17 NP_005193 (OMIM: 120252,136800,609140) collagen al ( 703) 889 89.1 4.6e-17 XP_005270534 (OMIM: 120252,136800,609140) PREDICTE ( 780) 889 89.2 4.9e-17 XP_005257116 (OMIM: 114000,120150,130000,130060,16 (1158) 889 89.4 6.2e-17 XP_011522643 (OMIM: 114000,120150,130000,130060,16 (1398) 886 89.3 8.3e-17 XP_011539019 (OMIM: 120260,600204,603932,614284) P ( 508) 875 87.8 8.5e-17 XP_011508875 (OMIM: 120190,130000) PREDICTED: coll (1453) 886 89.3 8.5e-17 NP_000384 (OMIM: 120190,130000) collagen alpha-2(V (1499) 886 89.3 8.6e-17 XP_011517442 (OMIM: 608461,615155) PREDICTED: coll (1842) 888 89.6 8.7e-17 XP_016855822 (OMIM: 120260,600204,603932,614284) P ( 595) 875 87.9 9.3e-17 XP_011539017 (OMIM: 120260,600204,603932,614284) P ( 599) 875 87.9 9.4e-17 XP_011539018 (OMIM: 120260,600204,603932,614284) P ( 599) 875 87.9 9.4e-17 XP_006710428 (OMIM: 120260,600204,603932,614284) P ( 689) 875 88.0 1e-16 NP_001843 (OMIM: 120260,600204,603932,614284) coll ( 689) 875 88.0 1e-16 XP_016855821 (OMIM: 120260,600204,603932,614284) P ( 693) 875 88.0 1e-16 XP_016855826 (OMIM: 120280,154780,228520,603932,60 (1323) 876 88.4 1.4e-16 NP_511040 (OMIM: 120210,614134,614135) collagen al ( 678) 868 87.4 1.5e-16 XP_016869755 (OMIM: 120215,130000) PREDICTED: coll (1715) 877 88.6 1.6e-16 NP_000084 (OMIM: 120215,130000) collagen alpha-1(V (1838) 877 88.7 1.6e-16 NP_001265003 (OMIM: 120215,130000) collagen alpha- (1838) 877 88.7 1.6e-16 NP_542197 (OMIM: 120280,154780,228520,603932,60484 (1690) 876 88.5 1.7e-16 NP_001177638 (OMIM: 120280,154780,228520,603932,60 (1767) 876 88.6 1.7e-16 NP_001845 (OMIM: 120280,154780,228520,603932,60484 (1806) 876 88.6 1.7e-16 NP_542196 (OMIM: 120280,154780,228520,603932,60484 (1818) 876 88.6 1.7e-16 XP_016855824 (OMIM: 120280,154780,228520,603932,60 (1855) 876 88.6 1.8e-16 XP_016855823 (OMIM: 120280,154780,228520,603932,60 (1857) 876 88.6 1.8e-16 XP_011517447 (OMIM: 608461,615155) PREDICTED: coll (1049) 870 87.8 1.8e-16 XP_006717373 (OMIM: 608461,615155) PREDICTED: coll (1087) 870 87.8 1.8e-16 NP_001842 (OMIM: 120210,614134,614135) collagen al ( 921) 868 87.5 1.8e-16 XP_016870728 (OMIM: 608461,615155) PREDICTED: coll (1214) 870 87.9 1.9e-16 XP_011517446 (OMIM: 608461,615155) PREDICTED: coll (1352) 870 87.9 2.1e-16 XP_011517445 (OMIM: 608461,615155) PREDICTED: coll (1353) 870 87.9 2.1e-16 XP_011517444 (OMIM: 608461,615155) PREDICTED: coll (1401) 870 87.9 2.1e-16 XP_006717371 (OMIM: 608461,615155) PREDICTED: coll (1842) 870 88.1 2.5e-16 XP_011517440 (OMIM: 608461,615155) PREDICTED: coll (1858) 870 88.1 2.5e-16 NP_116277 (OMIM: 608461,615155) collagen alpha-1(X (1860) 870 88.1 2.5e-16 XP_005257115 (OMIM: 114000,120150,130000,130060,16 (1374) 865 87.5 2.8e-16 NP_000079 (OMIM: 114000,120150,130000,130060,16620 (1464) 865 87.5 2.9e-16 XP_016882338 (OMIM: 120216) PREDICTED: collagen al ( 966) 859 86.8 3.2e-16 XP_016874320 (OMIM: 108300,120140,132450,150600,15 (1305) 861 87.1 3.4e-16 NP_149162 (OMIM: 108300,120140,132450,150600,15121 (1418) 861 87.2 3.6e-16 XP_016874319 (OMIM: 108300,120140,132450,150600,15 (1465) 861 87.2 3.6e-16 NP_001835 (OMIM: 108300,120140,132450,150600,15121 (1487) 861 87.2 3.7e-16 >>XP_011510384 (OMIM: 604870) PREDICTED: macrophage rece (520 aa) initn: 3627 init1: 3627 opt: 3627 Z-score: 1666.1 bits: 317.9 E(85289): 4.6e-86 Smith-Waterman score: 3627; 100.0% identity (100.0% similar) in 520 aa overlap (1-520:1-520) 10 20 30 40 50 60 pF1KE1 MRNKKILKEDELLSETQQAAFHQIAMEPFEINVPKPKRRNGVNFSLAVVVIYLILLTAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MRNKKILKEDELLSETQQAAFHQIAMEPFEINVPKPKRRNGVNFSLAVVVIYLILLTAGA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GLLVVQVLNLQARLRVLEMYFLNDTLAAEDSPSFSLLQSAHPGEHLAQGASRLQVLQAQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GLLVVQVLNLQARLRVLEMYFLNDTLAAEDSPSFSLLQSAHPGEHLAQGASRLQVLQAQL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 TWVRVSHEHLLQRVDNFTQNPGMFRIKGEQGAPGLQGHKGAMGMPGAPGPPGPPAEKGAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 TWVRVSHEHLLQRVDNFTQNPGMFRIKGEQGAPGLQGHKGAMGMPGAPGPPGPPAEKGAK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 GAMGRDGATGPSGPQGPPGVKGEAGLQGPQGAPGKQGATGTPGPQGEKGSKGDGGLIGPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GAMGRDGATGPSGPQGPPGVKGEAGLQGPQGAPGKQGATGTPGPQGEKGSKGDGGLIGPK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 GETGTKGEKGDLGLPGSKGDRGMKGDAGVMGPPGAQGSKGDFGRPGPPGLAGFPGAKGDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GETGTKGEKGDLGLPGSKGDRGMKGDAGVMGPPGAQGSKGDFGRPGPPGLAGFPGAKGDQ 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 GQPGLQGVPGPPGAVGHPGAKGEPGSAGSPGRAGLPGSPGSPGATGLKGSKGDTGLQGQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GQPGLQGVPGPPGAVGHPGAKGEPGSAGSPGRAGLPGSPGSPGATGLKGSKGDTGLQGQQ 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 GRKGESGVPGPAGVKGEQGSPGLAGPKGAPGQAGQKGDQGVKGSSGEQGVKGEKGERGEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GRKGESGVPGPAGVKGEQGSPGLAGPKGAPGQAGQKGDQGVKGSSGEQGVKGEKGERGEN 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE1 SVSVRIVGSSNRGRAEVYYSGTWGTICDDEWQNSDAIVFCRMLGYSKGRALYKVGAGTGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SVSVRIVGSSNRGRAEVYYSGTWGTICDDEWQNSDAIVFCRMLGYSKGRALYKVGAGTGQ 430 440 450 460 470 480 490 500 510 520 pF1KE1 IWLDNVQCRGTESTLWSCTKNSWGHHDCSHEEDAGVECSV :::::::::::::::::::::::::::::::::::::::: XP_011 IWLDNVQCRGTESTLWSCTKNSWGHHDCSHEEDAGVECSV 490 500 510 520 >>NP_006761 (OMIM: 604870) macrophage receptor MARCO [Ho (520 aa) initn: 3627 init1: 3627 opt: 3627 Z-score: 1666.1 bits: 317.9 E(85289): 4.6e-86 Smith-Waterman score: 3627; 100.0% identity (100.0% similar) in 520 aa overlap (1-520:1-520) 10 20 30 40 50 60 pF1KE1 MRNKKILKEDELLSETQQAAFHQIAMEPFEINVPKPKRRNGVNFSLAVVVIYLILLTAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MRNKKILKEDELLSETQQAAFHQIAMEPFEINVPKPKRRNGVNFSLAVVVIYLILLTAGA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GLLVVQVLNLQARLRVLEMYFLNDTLAAEDSPSFSLLQSAHPGEHLAQGASRLQVLQAQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 GLLVVQVLNLQARLRVLEMYFLNDTLAAEDSPSFSLLQSAHPGEHLAQGASRLQVLQAQL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 TWVRVSHEHLLQRVDNFTQNPGMFRIKGEQGAPGLQGHKGAMGMPGAPGPPGPPAEKGAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 TWVRVSHEHLLQRVDNFTQNPGMFRIKGEQGAPGLQGHKGAMGMPGAPGPPGPPAEKGAK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 GAMGRDGATGPSGPQGPPGVKGEAGLQGPQGAPGKQGATGTPGPQGEKGSKGDGGLIGPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 GAMGRDGATGPSGPQGPPGVKGEAGLQGPQGAPGKQGATGTPGPQGEKGSKGDGGLIGPK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 GETGTKGEKGDLGLPGSKGDRGMKGDAGVMGPPGAQGSKGDFGRPGPPGLAGFPGAKGDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 GETGTKGEKGDLGLPGSKGDRGMKGDAGVMGPPGAQGSKGDFGRPGPPGLAGFPGAKGDQ 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 GQPGLQGVPGPPGAVGHPGAKGEPGSAGSPGRAGLPGSPGSPGATGLKGSKGDTGLQGQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 GQPGLQGVPGPPGAVGHPGAKGEPGSAGSPGRAGLPGSPGSPGATGLKGSKGDTGLQGQQ 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 GRKGESGVPGPAGVKGEQGSPGLAGPKGAPGQAGQKGDQGVKGSSGEQGVKGEKGERGEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 GRKGESGVPGPAGVKGEQGSPGLAGPKGAPGQAGQKGDQGVKGSSGEQGVKGEKGERGEN 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE1 SVSVRIVGSSNRGRAEVYYSGTWGTICDDEWQNSDAIVFCRMLGYSKGRALYKVGAGTGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 SVSVRIVGSSNRGRAEVYYSGTWGTICDDEWQNSDAIVFCRMLGYSKGRALYKVGAGTGQ 430 440 450 460 470 480 490 500 510 520 pF1KE1 IWLDNVQCRGTESTLWSCTKNSWGHHDCSHEEDAGVECSV :::::::::::::::::::::::::::::::::::::::: NP_006 IWLDNVQCRGTESTLWSCTKNSWGHHDCSHEEDAGVECSV 490 500 510 520 >>XP_011510385 (OMIM: 604870) PREDICTED: macrophage rece (399 aa) initn: 2645 init1: 2645 opt: 2645 Z-score: 1223.6 bits: 235.6 E(85289): 2.1e-61 Smith-Waterman score: 2645; 100.0% identity (100.0% similar) in 367 aa overlap (154-520:33-399) 130 140 150 160 170 180 pF1KE1 RVSHEHLLQRVDNFTQNPGMFRIKGEQGAPGLQGHKGAMGMPGAPGPPGPPAEKGAKGAM :::::::::::::::::::::::::::::: XP_011 NKKILKEDELLSETQQAAFHQIAMEPFEINGLQGHKGAMGMPGAPGPPGPPAEKGAKGAM 10 20 30 40 50 60 190 200 210 220 230 240 pF1KE1 GRDGATGPSGPQGPPGVKGEAGLQGPQGAPGKQGATGTPGPQGEKGSKGDGGLIGPKGET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GRDGATGPSGPQGPPGVKGEAGLQGPQGAPGKQGATGTPGPQGEKGSKGDGGLIGPKGET 70 80 90 100 110 120 250 260 270 280 290 300 pF1KE1 GTKGEKGDLGLPGSKGDRGMKGDAGVMGPPGAQGSKGDFGRPGPPGLAGFPGAKGDQGQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GTKGEKGDLGLPGSKGDRGMKGDAGVMGPPGAQGSKGDFGRPGPPGLAGFPGAKGDQGQP 130 140 150 160 170 180 310 320 330 340 350 360 pF1KE1 GLQGVPGPPGAVGHPGAKGEPGSAGSPGRAGLPGSPGSPGATGLKGSKGDTGLQGQQGRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GLQGVPGPPGAVGHPGAKGEPGSAGSPGRAGLPGSPGSPGATGLKGSKGDTGLQGQQGRK 190 200 210 220 230 240 370 380 390 400 410 420 pF1KE1 GESGVPGPAGVKGEQGSPGLAGPKGAPGQAGQKGDQGVKGSSGEQGVKGEKGERGENSVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GESGVPGPAGVKGEQGSPGLAGPKGAPGQAGQKGDQGVKGSSGEQGVKGEKGERGENSVS 250 260 270 280 290 300 430 440 450 460 470 480 pF1KE1 VRIVGSSNRGRAEVYYSGTWGTICDDEWQNSDAIVFCRMLGYSKGRALYKVGAGTGQIWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VRIVGSSNRGRAEVYYSGTWGTICDDEWQNSDAIVFCRMLGYSKGRALYKVGAGTGQIWL 310 320 330 340 350 360 490 500 510 520 pF1KE1 DNVQCRGTESTLWSCTKNSWGHHDCSHEEDAGVECSV ::::::::::::::::::::::::::::::::::::: XP_011 DNVQCRGTESTLWSCTKNSWGHHDCSHEEDAGVECSV 370 380 390 >>XP_016860660 (OMIM: 604870) PREDICTED: macrophage rece (322 aa) initn: 1758 init1: 1758 opt: 1774 Z-score: 831.0 bits: 162.7 E(85289): 1.5e-39 Smith-Waterman score: 1774; 90.0% identity (93.0% similar) in 301 aa overlap (1-298:1-300) 10 20 30 40 50 60 pF1KE1 MRNKKILKEDELLSETQQAAFHQIAMEPFEINVPKPKRRNGVNFSLAVVVIYLILLTAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MRNKKILKEDELLSETQQAAFHQIAMEPFEINVPKPKRRNGVNFSLAVVVIYLILLTAGA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GLLVVQVLNLQARLRVLEMYFLNDTLAAEDSPSFSLLQSAHPGEHLAQGASRLQVLQAQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GLLVVQVLNLQARLRVLEMYFLNDTLAAEDSPSFSLLQSAHPGEHLAQGASRLQVLQAQL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 TWVRVSHEHLLQRVDNFTQNPGMFRIKGEQGAPGLQGHKGAMGMPGAPGPPGPPAEKGAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 TWVRVSHEHLLQRVDNFTQNPGMFRIKGEQGAPGLQGHKGAMGMPGAPGPPGPPAEKGAK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 GAMGRDGATGPSGPQGPPGVKGEAGLQGPQGAPGKQGATGTPGPQGEKGSKGDGGLIGPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GAMGRDGATGPSGPQGPPGVKGEAGLQGPQGAPGKQGATGTPGPQGEKGSKGDGGLIGPK 190 200 210 220 230 240 250 260 270 280 290 pF1KE1 GETGTKGEKGDLGLPGSKGDRGMKGDAGVMGPPGA-QGSKGDF--GRPGPPGLAGFPGAK :::::::::::::::::.::. .: : .: : :.:: .: :: . : .. XP_016 GETGTKGEKGDLGLPGSQGDE-ESGPALGLGKQGRLTGGKGKGIDSRRETPGSQNPPLTE 250 260 270 280 290 300 310 320 330 340 350 pF1KE1 GDQGQPGLQGVPGPPGAVGHPGAKGEPGSAGSPGRAGLPGSPGSPGATGLKGSKGDTGLQ : XP_016 GAISRTVFLKPRANIIRAVWVLA 300 310 320 >>NP_000081 (OMIM: 120180,130020,130050) collagen alpha- (1466 aa) initn: 2388 init1: 859 opt: 944 Z-score: 448.7 bits: 94.2 E(85289): 3e-18 Smith-Waterman score: 959; 50.3% identity (64.7% similar) in 286 aa overlap (148-418:717-993) 120 130 140 150 160 170 pF1KE1 AQLTWVRVSHEHLLQRVDNFTQNPGMFRIKGEQGAPGLQG---HKGAMGMPGAPGPPGPP : :.::::: ..:..: :: : : : NP_000 GLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEP 690 700 710 720 730 740 180 190 200 210 220 pF1KE1 AEKGAKGAMGRDGATGPSGPQGPPGV------KGEAG------LQGPQGAPGKQGATGTP . :: :. :.:: ::.:: :::: :::.: . ::.:.::..: :: : NP_000 GGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPP 750 760 770 780 790 800 230 240 250 260 270 280 pF1KE1 GPQGEKGSKGDGGLIGPKGETGTKGEKGDLGLPGSKGDRGMKGDAGVMGPPGAQGSKGDF :: : :. :..: : ::: :. ::::. : :: : : .: :: ::: :: ::. NP_000 GPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAG---PPGPQGVKGER 810 820 830 840 850 860 290 300 310 320 330 340 pF1KE1 GRPGPPGLAGFPGAKGDQGQPGLQGVPGPPGAVGHPGAKGEPGSAGSPGRAGLPGSPGSP : :: :: ::::::.: : :: .: ::::: : :: : :: ::. : .:::: NP_000 GSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTG------APGSP 870 880 890 900 910 350 360 370 380 390 400 pF1KE1 GATGLKGSKGDTGLQGQQGRKGESGVPGPAGVKGEQGSPGLAGPKGAPGQAGQKGDQGVK :..: ::. :. : .:. : .: :.::: :. : :. ::::: : :: :. : :::: NP_000 GVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVK 920 930 940 950 960 970 410 420 430 440 450 460 pF1KE1 GSSGEQGVKGEKGERGENSVSVRIVGSSNRGRAEVYYSGTWGTICDDEWQNSDAIVFCRM : ::. :..: .:::: NP_000 GESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGEN 980 990 1000 1010 1020 1030 >-- initn: 812 init1: 812 opt: 865 Z-score: 413.0 bits: 87.5 E(85289): 2.9e-16 Smith-Waterman score: 894; 46.1% identity (62.2% similar) in 304 aa overlap (136-418:150-453) 110 120 130 140 150 160 pF1KE1 LAQGASRLQVLQAQLTWVRVSHEHLLQRVDNFTQNPGMFRIKGEQGAPGLQGHKGAMGMP :.. . . .:. .. :: :. : : : NP_000 NGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPP 120 130 140 150 160 170 170 180 190 200 210 pF1KE1 GAPGPPG----P--PAEKGAKGAMGRDGATGPSGPQGPPGV---KGEAGLQGPQGAPGKQ : ::::: : :. : .: :. : .::::: ::::. .: :: .: .: ::. NP_000 GPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRP 180 190 200 210 220 230 220 230 240 250 260 270 pF1KE1 GATGTPGPQGEKGSKGDGGLIGPKGETG---TKGEKGDLGLPGSKGDRGMKGDAGVMGPP : : ::: : :: : :. : ::. : .::::. : :: ::. :. :. :. :: NP_000 GERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPM 240 250 260 270 280 290 280 290 300 310 320 330 pF1KE1 GAQGSKGDFGRPGPPGLAGF---PGAKGDQGQPGLQGVPGPPGAVGHPGAKGEPGSAGSP : .:. :. :::: :: :: ::.:..:::: : :: : : :::::: : :::: NP_000 GPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSP 300 310 320 330 340 350 340 350 360 370 380 pF1KE1 GRAGLPGS---PGSPGATGLKGSKGDTGLQGQQGRKGE---SGVPGPAGVKGEQGSPGLA : : ::. :: : .: .: : :..:. : ::: .:.:: :. : .: :: : NP_000 GSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPA 360 370 380 390 400 410 390 400 410 420 430 440 pF1KE1 GPKGAPGQAGQKGDQGVKGSSGEQGVKGEKGERGENSVSVRIVGSSNRGRAEVYYSGTWG : .:::: : :. : .:..:: : .::.:: : NP_000 GANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLP 420 430 440 450 460 470 450 460 470 480 490 500 pF1KE1 TICDDEWQNSDAIVFCRMLGYSKGRALYKVGAGTGQIWLDNVQCRGTESTLWSCTKNSWG NP_000 GAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMP 480 490 500 510 520 530 >-- initn: 1441 init1: 740 opt: 758 Z-score: 364.7 bits: 78.6 E(85289): 1.4e-13 Smith-Waterman score: 758; 46.7% identity (61.1% similar) in 244 aa overlap (142-382:477-714) 120 130 140 150 160 170 pF1KE1 RLQVLQAQLTWVRVSHEHLLQRVDNFTQNPGMFRIKGEQGAPGLQGHKGAMGMPGAPGPP :. ::.::::..: : :.:: :: NP_000 GERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPA 450 460 470 480 490 500 180 190 200 210 220 230 pF1KE1 GPPAEKGAKGAMGRDGATGPSGPQGPPGVKGEAGLQGPQGAPGKQGATGTPGPQGEKGSK : :.:: : : ::.: : .: :: : :. : :.::..: : :: :::.: NP_000 G---ERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRP 510 520 530 540 550 560 240 250 260 270 280 pF1KE1 GDGGLIGPKGETGT---KGEKGDLGLPGSKGDRGMKGDAGVMGPPGAQGSKGDFGRPGPP : : ::.:. :. : ::. : ::..:.:: : : .::: :..:. : ::: NP_000 GPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPP---GKNGETGPQGPP 570 580 590 600 610 620 290 300 310 320 330 340 pF1KE1 GLAGFPGAKGDQGQPGLQGVPGPPGAVGHPGAKGEPGSAGSPGRAGLPGSPGSPGATGLK : .: : ::: : :: ::. : ::. : :: .:.:: : : :: ::.::. : .: NP_000 GPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAP 630 640 650 660 670 680 350 360 370 380 390 400 pF1KE1 GSKGDTGLQGQQGRKGESGVPGPAGVKGEQGSPGLAGPKGAPGQAGQKGDQGVKGSSGEQ : .: :: : : .: .: ::: : :: : :: NP_000 GERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPK 690 700 710 720 730 740 410 420 430 440 450 460 pF1KE1 GVKGEKGERGENSVSVRIVGSSNRGRAEVYYSGTWGTICDDEWQNSDAIVFCRMLGYSKG NP_000 GDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGER 750 760 770 780 790 800 >-- initn: 1153 init1: 616 opt: 638 Z-score: 310.5 bits: 68.6 E(85289): 1.5e-10 Smith-Waterman score: 638; 43.9% identity (57.0% similar) in 223 aa overlap (148-369:996-1218) 120 130 140 150 160 170 pF1KE1 AQLTWVRVSHEHLLQRVDNFTQNPGMFRIKGEQGAPGLQGHKGAMGMPGAPGPPGPPAEK : :: ::: : : : : :: : :.. NP_000 GPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRD 970 980 990 1000 1010 1020 180 190 200 210 220 230 pF1KE1 GAKGAMGRDGATGPSGPQGPPGVKGEAGLQGPQGAPGKQGATGTPGPQGEKGSKGDGGLI :. :. : : .: : : :: : : :: : : .: .: :: : : :. : NP_000 GSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAP 1030 1040 1050 1060 1070 1080 240 250 260 270 280 290 pF1KE1 GPKGETGTKGEKGDLGLPGSKGDRGMKGDAGVMGPPGAQGSKGDFGRPGPPGLAGFPGAK ::.: : ::: :. : : :: ::. :. :. : :: :..: .: ::: : : : . NP_000 GPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPS 1090 1100 1110 1120 1130 1140 300 310 320 330 340 350 pF1KE1 GDQGQPGLQGVPGPPGAVGHPGAKGEPGSAGSPGRAGLPGSPGSPGATG-LKGSKGDTGL : :. : .: ::: : : : .:: :: ::::. : :: :: ::: : :. : ... NP_000 GPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAI 1150 1160 1170 1180 1190 1200 360 370 380 390 400 410 pF1KE1 QGQQGRKGESGVPGPAGVKGEQGSPGLAGPKGAPGQAGQKGDQGVKGSSGEQGVKGEKGE : :.:. . .: NP_000 AGIGGEKAGGFAPYYGDEPMDFKINTDEIMTSLKSVNGQIESLISPDGSRKNPARNCRDL 1210 1220 1230 1240 1250 1260 >>XP_011526344 (OMIM: 120216) PREDICTED: collagen alpha- (1744 aa) initn: 4669 init1: 868 opt: 907 Z-score: 431.2 bits: 91.2 E(85289): 2.8e-17 Smith-Waterman score: 915; 46.8% identity (61.4% similar) in 293 aa overlap (141-418:495-787) 120 130 140 150 160 170 pF1KE1 SRLQVLQAQLTWVRVSHEHLLQRVDNFTQNPGMFRIKGEQGAPGLQGHKGAMGMPGAPGP :: .:::.:: : :: .: .: : :: XP_011 AQAVLQQTQLSMKGPPGPVGLTGRPGPVGLPGHPGLKGEEGAEGPQGPRGLQGPHGPPGR 470 480 490 500 510 520 180 190 200 210 pF1KE1 PGPPAEKGAKGAMGRDGATGPSGPQG----P--PGVKGE------AGLQGPQGAPGKQGA : .. :: :: : : :::.: .: : :: ::. .: :: : :..:: XP_011 VGKMGRPGADGARGLPGDTGPKGDRGFDGLPGLPGEKGQRGDFGHVGQPGPPGEDGERGA 530 540 550 560 570 580 220 230 240 250 260 270 pF1KE1 TGTPGPQGEKGSKGDGGLIGPKGETGTKGEKGDLGLPGSKGDRGMKGDAGVMGPPGAQGS : ::: :. : : ::.::.: : :. : :. :. : .: : : :::: ::. XP_011 EGPPGPTGQAGEPGPRGLLGPRGSPGPTGRPGVTGIDGAPGAKGNVGPPGEPGPPGQQGN 590 600 610 620 630 640 280 290 300 310 320 330 pF1KE1 KGDFGRPGPPGLAGFPGAKGDQGQPGLQGVPGPPGAVGHPGAKGEPGSAGSPGRAGLPGS .:. : ::: :: : :: :: :.::. :.:: : .:::: .: : :. : : : XP_011 HGSQGLPGPQGLIGTPGEKGPPGNPGIPGLPGSDGPLGHPGHEGPTGEKGAQGPPGSAGP 650 660 670 680 690 700 340 350 360 370 380 390 pF1KE1 PGSPGATGLKGSKGDTGLQGQQGRKGESGVPG---PAGVKGEQGSPGLAGPKGAPGQAGQ :: :: :.::..:. ::::..:.:::.: :: .:.::.::.:: ::.: : : XP_011 PGYPGPRGVKGTSGNRGLQGEKGEKGEDGFPGFKGDVGLKGDQGKPGAPGPRGEDGPEGP 710 720 730 740 750 760 400 410 420 430 440 450 pF1KE1 KGDQGVKGSSGEQGVKGEKGERGENSVSVRIVGSSNRGRAEVYYSGTWGTICDDEWQNSD ::. : : : : ::::. : XP_011 KGQAGQAGEEGPPGSAGEKGKLGVPGLPGYPGRPGPKGSIGFPGPLGPIGEKGKSGKTGQ 770 780 790 800 810 820 >-- initn: 1602 init1: 858 opt: 859 Z-score: 409.5 bits: 87.1 E(85289): 4.5e-16 Smith-Waterman score: 862; 45.3% identity (56.0% similar) in 318 aa overlap (141-418:1125-1441) 120 130 140 150 160 170 pF1KE1 SRLQVLQAQLTWVRVSHEHLLQRVDNFTQNPGMFRIKGEQGAPGLQGHKGAMGMPGAPGP ::.: ::..:. :. : : :. : ::: XP_011 AGPPGQPGIRGPAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRGFVGVIGPPGLQGLPGP 1100 1110 1120 1130 1140 1150 180 190 200 210 pF1KE1 PGPPAEKGAKGAMGRDGATGPSGPQGP---------------PGVKGEAGLQGPQGAPGK :: .: : :.:: :: :: ::::: ::. :: : .: : :: XP_011 PGEKGEVGDVGSMGPHGAPGPRGPQGPTGSEGTPGLPGGVGQPGAVGEKGERGDAGDPGP 1160 1170 1180 1190 1200 1210 220 230 240 250 260 pF1KE1 QGATGTPGPQGEKGSKGDGG---------LIGPKGETGTKGEKGDLGLPGSKGDRGMKGD :: : :::.:. : :::.: :: :: :.:: : ::::. : : : XP_011 PGAPGIPGPKGDIGEKGDSGPSGAAGPPGKKGPPGEDGAKGSVGPTGLPGDLGPPGDPGV 1220 1230 1240 1250 1260 1270 270 280 290 300 310 320 pF1KE1 AGVMGPPGAQGSKGDFGRPGPPGLAGFPGAKGDQGQPGLQGVPGPPGAVGHPGAKGEPGS .:. : :: .:. :: : ::::: .: ::: : :. : .: : : :. ::::::: XP_011 SGIDGSPGEKGDPGDVGGPGPPGASGEPGAPGPPGKRGPSGHMGREGREGEKGAKGEPGP 1280 1290 1300 1310 1320 1330 330 340 350 360 370 pF1KE1 AGSPGRAGLP----GSPGSPGATGLKGSKGDTGLQGQQGRKGESGVPGP----------- : :::.: : : :: : ::.: : .: : : :. : ::: XP_011 DGPPGRTG-PMGARGPPGRVGPEGLRGIPGPVGEPGLLGAPGQMGPPGPLGPSGLPGLKG 1340 1350 1360 1370 1380 1390 380 390 400 410 420 430 pF1KE1 -AGVKGEQGSPGLAGPKGAPGQAGQKGDQGVKGSSGEQGVKGEKGERGENSVSVRIVGSS .: :::.: :: : : ::.::.:::::. : .: : ::. : : XP_011 DTGPKGEKGHIGLIGLIGPPGEAGEKGDQGLPGVQGPPGPKGDPGPPGPIGSLGHPGPPG 1400 1410 1420 1430 1440 1450 440 450 460 470 480 490 pF1KE1 NRGRAEVYYSGTWGTICDDEWQNSDAIVFCRMLGYSKGRALYKVGAGTGQIWLDNVQCRG XP_011 VAGPLGQKGSKGSPGSMGPRGDTGPAGPPGPPGAPAELHGLRRRRRFVPVPLPVVEGGLE 1460 1470 1480 1490 1500 1510 >-- initn: 1424 init1: 757 opt: 835 Z-score: 398.7 bits: 85.1 E(85289): 1.8e-15 Smith-Waterman score: 835; 44.3% identity (59.1% similar) in 296 aa overlap (138-418:822-1111) 110 120 130 140 150 160 pF1KE1 QGASRLQVLQAQLTWVRVSHEHLLQRVDNFTQNPGMFRIKGEQGAPGLQGHKGAMGMPGA : .::. .::.: :: .:..: : : XP_011 PGYPGRPGPKGSIGFPGPLGPIGEKGKSGKTGQPGL---EGERGPPGSRGERGQPGATGQ 800 810 820 830 840 170 180 190 200 210 220 pF1KE1 PGPPGPPAEKGAKGAMGRDGATGPSGPQGPPGVKGEAGLQGPQGAPGKQGATGTPGPQGE ::: : .. :: : :. : : .:: : :: :: : :: .: ::. : : : ::. XP_011 PGPKGDVGQDGAPGIPGEKGLPGLQGPPGFPGPKGPPGHQGKDGRPGHPGQRGELGFQGQ 850 860 870 880 890 900 230 240 250 260 270 280 pF1KE1 KGSKGDGGLIGPKGETGTKG---EKGDLGLPGSKGDRGMKGDAGVMGPPGAQGSKGDFGR : : .:..::.:.:: : :.: : :: :..:. : : : : : : .:. XP_011 TGPPGPAGVLGPQGKTGEVGPLGERGPPGPPGPPGEQGLPGLEGREGAKGELGPPGPLGK 910 920 930 940 950 960 290 300 310 320 330 340 pF1KE1 PGPPGLAGFPGAKGDQGQPG---LQGVPGPPGAVGHPGAKGEPGSAGSPGRAGLPGSPGS :: :: :::: :: :.:: :.: :::: :: :. :: : : : ::::. :: XP_011 EGPAGLRGFPGPKGGPGDPGPTGLKGDKGPPGPVGANGSPGERGPLGPAGGIGLPGQSGS 970 980 990 1000 1010 1020 350 360 370 380 390 pF1KE1 PGATGLKGSKGDTGLQGQQGRKGESGVPGPAGVKGEQGSPGLAGPKG---------APGQ : .: :.::. : .: : :..:.::: : : :: :::.: :::. XP_011 EGPVGPAGKKGSRGERGPPGPTGKDGIPGPLG---PLGPPGAAGPSGEEGDKGDVGAPGH 1030 1040 1050 1060 1070 1080 400 410 420 430 440 450 pF1KE1 AGQKGDQGVKGSSGEQGVKGEKGERGENSVSVRIVGSSNRGRAEVYYSGTWGTICDDEWQ :.:::.: : :. :..: :. : XP_011 KGSKGDKGDAGPPGQPGIRGPAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRGFVGVIGP 1090 1100 1110 1120 1130 1140 >>NP_056534 (OMIM: 120216) collagen alpha-3(V) chain pre (1745 aa) initn: 4669 init1: 868 opt: 907 Z-score: 431.2 bits: 91.2 E(85289): 2.8e-17 Smith-Waterman score: 915; 46.8% identity (61.4% similar) in 293 aa overlap (141-418:496-788) 120 130 140 150 160 170 pF1KE1 SRLQVLQAQLTWVRVSHEHLLQRVDNFTQNPGMFRIKGEQGAPGLQGHKGAMGMPGAPGP :: .:::.:: : :: .: .: : :: NP_056 AQAVLQQTQLSMKGPPGPVGLTGRPGPVGLPGHPGLKGEEGAEGPQGPRGLQGPHGPPGR 470 480 490 500 510 520 180 190 200 210 pF1KE1 PGPPAEKGAKGAMGRDGATGPSGPQG----P--PGVKGE------AGLQGPQGAPGKQGA : .. :: :: : : :::.: .: : :: ::. .: :: : :..:: NP_056 VGKMGRPGADGARGLPGDTGPKGDRGFDGLPGLPGEKGQRGDFGHVGQPGPPGEDGERGA 530 540 550 560 570 580 220 230 240 250 260 270 pF1KE1 TGTPGPQGEKGSKGDGGLIGPKGETGTKGEKGDLGLPGSKGDRGMKGDAGVMGPPGAQGS : ::: :. : : ::.::.: : :. : :. :. : .: : : :::: ::. NP_056 EGPPGPTGQAGEPGPRGLLGPRGSPGPTGRPGVTGIDGAPGAKGNVGPPGEPGPPGQQGN 590 600 610 620 630 640 280 290 300 310 320 330 pF1KE1 KGDFGRPGPPGLAGFPGAKGDQGQPGLQGVPGPPGAVGHPGAKGEPGSAGSPGRAGLPGS .:. : ::: :: : :: :: :.::. :.:: : .:::: .: : :. : : : NP_056 HGSQGLPGPQGLIGTPGEKGPPGNPGIPGLPGSDGPLGHPGHEGPTGEKGAQGPPGSAGP 650 660 670 680 690 700 340 350 360 370 380 390 pF1KE1 PGSPGATGLKGSKGDTGLQGQQGRKGESGVPG---PAGVKGEQGSPGLAGPKGAPGQAGQ :: :: :.::..:. ::::..:.:::.: :: .:.::.::.:: ::.: : : NP_056 PGYPGPRGVKGTSGNRGLQGEKGEKGEDGFPGFKGDVGLKGDQGKPGAPGPRGEDGPEGP 710 720 730 740 750 760 400 410 420 430 440 450 pF1KE1 KGDQGVKGSSGEQGVKGEKGERGENSVSVRIVGSSNRGRAEVYYSGTWGTICDDEWQNSD ::. : : : : ::::. : NP_056 KGQAGQAGEEGPPGSAGEKGKLGVPGLPGYPGRPGPKGSIGFPGPLGPIGEKGKSGKTGQ 770 780 790 800 810 820 >-- initn: 1602 init1: 858 opt: 859 Z-score: 409.5 bits: 87.1 E(85289): 4.5e-16 Smith-Waterman score: 862; 45.3% identity (56.0% similar) in 318 aa overlap (141-418:1126-1442) 120 130 140 150 160 170 pF1KE1 SRLQVLQAQLTWVRVSHEHLLQRVDNFTQNPGMFRIKGEQGAPGLQGHKGAMGMPGAPGP ::.: ::..:. :. : : :. : ::: NP_056 AGPPGQPGIRGPAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRGFVGVIGPPGLQGLPGP 1100 1110 1120 1130 1140 1150 180 190 200 210 pF1KE1 PGPPAEKGAKGAMGRDGATGPSGPQGP---------------PGVKGEAGLQGPQGAPGK :: .: : :.:: :: :: ::::: ::. :: : .: : :: NP_056 PGEKGEVGDVGSMGPHGAPGPRGPQGPTGSEGTPGLPGGVGQPGAVGEKGERGDAGDPGP 1160 1170 1180 1190 1200 1210 220 230 240 250 260 pF1KE1 QGATGTPGPQGEKGSKGDGG---------LIGPKGETGTKGEKGDLGLPGSKGDRGMKGD :: : :::.:. : :::.: :: :: :.:: : ::::. : : : NP_056 PGAPGIPGPKGDIGEKGDSGPSGAAGPPGKKGPPGEDGAKGSVGPTGLPGDLGPPGDPGV 1220 1230 1240 1250 1260 1270 270 280 290 300 310 320 pF1KE1 AGVMGPPGAQGSKGDFGRPGPPGLAGFPGAKGDQGQPGLQGVPGPPGAVGHPGAKGEPGS .:. : :: .:. :: : ::::: .: ::: : :. : .: : : :. ::::::: NP_056 SGIDGSPGEKGDPGDVGGPGPPGASGEPGAPGPPGKRGPSGHMGREGREGEKGAKGEPGP 1280 1290 1300 1310 1320 1330 330 340 350 360 370 pF1KE1 AGSPGRAGLP----GSPGSPGATGLKGSKGDTGLQGQQGRKGESGVPGP----------- : :::.: : : :: : ::.: : .: : : :. : ::: NP_056 DGPPGRTG-PMGARGPPGRVGPEGLRGIPGPVGEPGLLGAPGQMGPPGPLGPSGLPGLKG 1340 1350 1360 1370 1380 1390 380 390 400 410 420 430 pF1KE1 -AGVKGEQGSPGLAGPKGAPGQAGQKGDQGVKGSSGEQGVKGEKGERGENSVSVRIVGSS .: :::.: :: : : ::.::.:::::. : .: : ::. : : NP_056 DTGPKGEKGHIGLIGLIGPPGEAGEKGDQGLPGVQGPPGPKGDPGPPGPIGSLGHPGPPG 1400 1410 1420 1430 1440 1450 440 450 460 470 480 490 pF1KE1 NRGRAEVYYSGTWGTICDDEWQNSDAIVFCRMLGYSKGRALYKVGAGTGQIWLDNVQCRG NP_056 VAGPLGQKGSKGSPGSMGPRGDTGPAGPPGPPGAPAELHGLRRRRRFVPVPLPVVEGGLE 1460 1470 1480 1490 1500 1510 >-- initn: 1424 init1: 757 opt: 835 Z-score: 398.6 bits: 85.1 E(85289): 1.8e-15 Smith-Waterman score: 835; 44.3% identity (59.1% similar) in 296 aa overlap (138-418:823-1112) 110 120 130 140 150 160 pF1KE1 QGASRLQVLQAQLTWVRVSHEHLLQRVDNFTQNPGMFRIKGEQGAPGLQGHKGAMGMPGA : .::. .::.: :: .:..: : : NP_056 PGYPGRPGPKGSIGFPGPLGPIGEKGKSGKTGQPGL---EGERGPPGSRGERGQPGATGQ 800 810 820 830 840 170 180 190 200 210 220 pF1KE1 PGPPGPPAEKGAKGAMGRDGATGPSGPQGPPGVKGEAGLQGPQGAPGKQGATGTPGPQGE ::: : .. :: : :. : : .:: : :: :: : :: .: ::. : : : ::. NP_056 PGPKGDVGQDGAPGIPGEKGLPGLQGPPGFPGPKGPPGHQGKDGRPGHPGQRGELGFQGQ 850 860 870 880 890 900 230 240 250 260 270 280 pF1KE1 KGSKGDGGLIGPKGETGTKG---EKGDLGLPGSKGDRGMKGDAGVMGPPGAQGSKGDFGR : : .:..::.:.:: : :.: : :: :..:. : : : : : : .:. NP_056 TGPPGPAGVLGPQGKTGEVGPLGERGPPGPPGPPGEQGLPGLEGREGAKGELGPPGPLGK 910 920 930 940 950 960 290 300 310 320 330 340 pF1KE1 PGPPGLAGFPGAKGDQGQPG---LQGVPGPPGAVGHPGAKGEPGSAGSPGRAGLPGSPGS :: :: :::: :: :.:: :.: :::: :: :. :: : : : ::::. :: NP_056 EGPAGLRGFPGPKGGPGDPGPTGLKGDKGPPGPVGANGSPGERGPLGPAGGIGLPGQSGS 970 980 990 1000 1010 1020 350 360 370 380 390 pF1KE1 PGATGLKGSKGDTGLQGQQGRKGESGVPGPAGVKGEQGSPGLAGPKG---------APGQ : .: :.::. : .: : :..:.::: : : :: :::.: :::. NP_056 EGPVGPAGKKGSRGERGPPGPTGKDGIPGPLG---PLGPPGAAGPSGEEGDKGDVGAPGH 1030 1040 1050 1060 1070 1080 400 410 420 430 440 450 pF1KE1 AGQKGDQGVKGSSGEQGVKGEKGERGENSVSVRIVGSSNRGRAEVYYSGTWGTICDDEWQ :.:::.: : :. :..: :. : NP_056 KGSKGDKGDAGPPGQPGIRGPAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRGFVGVIGP 1090 1100 1110 1120 1130 1140 >>NP_001281276 (OMIM: 120252,136800,609140) collagen alp (638 aa) initn: 1622 init1: 562 opt: 889 Z-score: 427.8 bits: 89.1 E(85289): 4.3e-17 Smith-Waterman score: 889; 47.6% identity (59.7% similar) in 290 aa overlap (141-418:168-454) 120 130 140 150 160 170 pF1KE1 SRLQVLQAQLTWVRVSHEHLLQRVDNFTQNPGMFRIKGEQGAPGLQGHKGAMGMPGAPGP :. . : .: :: : :: : ::.::: NP_001 GLKGDNGVGQPGLPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGP 140 150 160 170 180 190 180 190 200 210 220 pF1KE1 PGPPAEKGAKGAMGRDG-----ATGPSGPQGPPGVKGEAGLQGPQG--APGKQGATGTPG : :. : :: : :: :.: ::::: :.::: : .:: : .: : : :: NP_001 RGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPG 200 210 220 230 240 250 230 240 250 260 270 280 pF1KE1 PQGEKGSKGDGGLIGPKGETGTKGEKGDLGLPGSKGDRGMKGDAGVMGPPGAQGSKGDFG :.:..: : ::.: .:: : :: :. : : : :. :.::. : : : ::. : NP_001 PKGDRGPAGVPGLLGDRGEPGEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAG 260 270 280 290 300 310 290 300 310 320 330 340 pF1KE1 RPGPPGLAGFPGAKGDQGQPGLQGVPGPPGAVGHPGAKGEPGSAGSPGRAGLPGSPGSPG ::::. :: .:::: :: : :: :: : :::.: :: .: :. :. : ::.:: NP_001 PGGPPGV---PGIRGDQGPSGLAGKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPG 320 330 340 350 360 370 350 360 370 380 390 pF1KE1 ATGLKGSKGDTGLQGQQGRKGESGVPG---PAGVKGEQGSPGLAGPKGAPGQAGQ--KGD ..: :.::: :: :: : .: ::.:: ::: : :: ::: : : :: :. :. NP_001 VAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGE 380 390 400 410 420 430 400 410 420 430 440 450 pF1KE1 QGVKGSSGEQGVKGEKGERGENSVSVRIVGSSNRGRAEVYYSGTWGTICDDEWQNSDAIV :. : .: :: : : : NP_001 PGTAGPTGPPGVPGSPGITGPPGPPGPPGPPGAPGAFDETGIAGLHLPNGGVEGAVLGKG 440 450 460 470 480 490 >-- initn: 465 init1: 186 opt: 482 Z-score: 243.9 bits: 55.1 E(85289): 7.6e-07 Smith-Waterman score: 527; 49.4% identity (59.5% similar) in 168 aa overlap (155-322:10-167) 130 140 150 160 170 180 pF1KE1 VSHEHLLQRVDNFTQNPGMFRIKGEQGAPGLQGHKGAMGMPGAPGPPGPPAEKGAKGAMG :.:. : : :: ::::::. : : :: NP_001 MPLPLLPMDLKGEPGPPGKPGPRGPPGPPGFPGKPG-MG 10 20 30 190 200 210 220 230 240 pF1KE1 RDGATGPSGPQGPPGVKGEAGLQGPQGAPGKQGATGTPGPQGEKGSKGDGGLIGPKGETG . : : :: :::: . . : :: : ::: : : :: .:: : .:: :: :: : : NP_001 KPGLHGQPGPAGPPGFS-RMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPG 40 50 60 70 80 90 250 260 270 280 290 300 pF1KE1 TKGEKGDLGLPGSKGDRGMKGDAGVMGPPGAQGSKGDFGRPGPPGLAGFPGAKGDQGQPG : .: . .::. : .: : :::: :: : :.::::: :. : .: :::: NP_001 LPGPSG-ITIPGKPGAQG------VPGPPGFQGEPGPQGEPGPPGDRGLKGDNG-VGQPG 100 110 120 130 140 310 320 330 340 350 360 pF1KE1 LQGVPGPPGAVGHPGAKGEPGSAGSPGRAGLPGSPGSPGATGLKGSKGDTGLQGQQGRKG : :.:: :: : :: : NP_001 LPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGP 150 160 170 180 190 200 >>NP_005193 (OMIM: 120252,136800,609140) collagen alpha- (703 aa) initn: 1622 init1: 562 opt: 889 Z-score: 427.4 bits: 89.1 E(85289): 4.6e-17 Smith-Waterman score: 889; 47.6% identity (59.7% similar) in 290 aa overlap (141-418:233-519) 120 130 140 150 160 170 pF1KE1 SRLQVLQAQLTWVRVSHEHLLQRVDNFTQNPGMFRIKGEQGAPGLQGHKGAMGMPGAPGP :. . : .: :: : :: : ::.::: NP_005 GLKGDNGVGQPGLPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGP 210 220 230 240 250 260 180 190 200 210 220 pF1KE1 PGPPAEKGAKGAMGRDG-----ATGPSGPQGPPGVKGEAGLQGPQG--APGKQGATGTPG : :. : :: : :: :.: ::::: :.::: : .:: : .: : : :: NP_005 RGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPG 270 280 290 300 310 320 230 240 250 260 270 280 pF1KE1 PQGEKGSKGDGGLIGPKGETGTKGEKGDLGLPGSKGDRGMKGDAGVMGPPGAQGSKGDFG :.:..: : ::.: .:: : :: :. : : : :. :.::. : : : ::. : NP_005 PKGDRGPAGVPGLLGDRGEPGEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAG 330 340 350 360 370 380 290 300 310 320 330 340 pF1KE1 RPGPPGLAGFPGAKGDQGQPGLQGVPGPPGAVGHPGAKGEPGSAGSPGRAGLPGSPGSPG ::::. :: .:::: :: : :: :: : :::.: :: .: :. :. : ::.:: NP_005 PGGPPGV---PGIRGDQGPSGLAGKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPG 390 400 410 420 430 350 360 370 380 390 pF1KE1 ATGLKGSKGDTGLQGQQGRKGESGVPG---PAGVKGEQGSPGLAGPKGAPGQAGQ--KGD ..: :.::: :: :: : .: ::.:: ::: : :: ::: : : :: :. :. NP_005 VAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGE 440 450 460 470 480 490 400 410 420 430 440 450 pF1KE1 QGVKGSSGEQGVKGEKGERGENSVSVRIVGSSNRGRAEVYYSGTWGTICDDEWQNSDAIV :. : .: :: : : : NP_005 PGTAGPTGPPGVPGSPGITGPPGPPGPPGPPGAPGAFDETGIAGLHLPNGGVEGAVLGKG 500 510 520 530 540 550 >-- initn: 647 init1: 200 opt: 519 Z-score: 260.2 bits: 58.2 E(85289): 9.4e-08 Smith-Waterman score: 533; 42.1% identity (54.1% similar) in 209 aa overlap (145-343:25-232) 120 130 140 150 160 170 pF1KE1 VLQAQLTWVRVSHEHLLQRVDNFTQNPGMFRIKGEQGAPGLQGHKGAMGM-PGAPGPPGP : .. :: : :. . . : :: :: NP_005 MLGTLTPLSSLLLLLLVLVLGCGPRASSGGGAGGAAGYAPVKYIQPMQKGPVGP 10 20 30 40 50 180 190 200 210 220 230 pF1KE1 PAEKGAKGAMGRDGATGP---SGPQGPPGVKGEAGLQGPQGAPGKQGATGTPGPQGEKGS : ..: . : .: :::: : : :: : ::: : : :: .:. : NP_005 PFREGKGQYLEMPLPLLPMDLKGEPGPPGKPGPRGPPGPPGFPGKPGM-GKPGLHGQPGP 60 70 80 90 100 110 240 250 260 270 280 pF1KE1 KGDGGL--IGPKGETGTKGEKGDLGLPGSKGDRGMKGDAGVMGPPGAQGSKGDFGR--PG : :. .: : : :. : : :: .:. :..:: :. :::: : : : :: NP_005 AGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITIPG 120 130 140 150 160 170 290 300 310 320 330 340 pF1KE1 PPGLAGFPGAKGDQGQPGLQGVPGPPGAVGHPGAKG--EPGSAGSPGRAGLPGSPGSPGA :: : :: : ::.:: :: ::::: : : .: .:: :.::..: :: :: :: NP_005 KPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGP 180 190 200 210 220 230 350 360 370 380 390 400 pF1KE1 TGLKGSKGDTGLQGQQGRKGESGVPGPAGVKGEQGSPGLAGPKGAPGQAGQKGDQGVKGS NP_005 AGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQG 240 250 260 270 280 290 >>XP_005270534 (OMIM: 120252,136800,609140) PREDICTED: c (780 aa) initn: 1622 init1: 562 opt: 889 Z-score: 426.9 bits: 89.2 E(85289): 4.9e-17 Smith-Waterman score: 889; 47.6% identity (59.7% similar) in 290 aa overlap (141-418:310-596) 120 130 140 150 160 170 pF1KE1 SRLQVLQAQLTWVRVSHEHLLQRVDNFTQNPGMFRIKGEQGAPGLQGHKGAMGMPGAPGP :. . : .: :: : :: : ::.::: XP_005 GLKGDNGVGQPGLPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGP 280 290 300 310 320 330 180 190 200 210 220 pF1KE1 PGPPAEKGAKGAMGRDG-----ATGPSGPQGPPGVKGEAGLQGPQG--APGKQGATGTPG : :. : :: : :: :.: ::::: :.::: : .:: : .: : : :: XP_005 RGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPG 340 350 360 370 380 390 230 240 250 260 270 280 pF1KE1 PQGEKGSKGDGGLIGPKGETGTKGEKGDLGLPGSKGDRGMKGDAGVMGPPGAQGSKGDFG :.:..: : ::.: .:: : :: :. : : : :. :.::. : : : ::. : XP_005 PKGDRGPAGVPGLLGDRGEPGEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAG 400 410 420 430 440 450 290 300 310 320 330 340 pF1KE1 RPGPPGLAGFPGAKGDQGQPGLQGVPGPPGAVGHPGAKGEPGSAGSPGRAGLPGSPGSPG ::::. :: .:::: :: : :: :: : :::.: :: .: :. :. : ::.:: XP_005 PGGPPGV---PGIRGDQGPSGLAGKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPG 460 470 480 490 500 510 350 360 370 380 390 pF1KE1 ATGLKGSKGDTGLQGQQGRKGESGVPG---PAGVKGEQGSPGLAGPKGAPGQAGQ--KGD ..: :.::: :: :: : .: ::.:: ::: : :: ::: : : :: :. :. XP_005 VAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGE 520 530 540 550 560 570 400 410 420 430 440 450 pF1KE1 QGVKGSSGEQGVKGEKGERGENSVSVRIVGSSNRGRAEVYYSGTWGTICDDEWQNSDAIV :. : .: :: : : : XP_005 PGTAGPTGPPGVPGSPGITGPPGPPGPPGPPGAPGAFDETGIAGLHLPNGGVEGAVLGKG 580 590 600 610 620 630 >-- initn: 647 init1: 200 opt: 519 Z-score: 259.7 bits: 58.3 E(85289): 1e-07 Smith-Waterman score: 533; 42.1% identity (54.1% similar) in 209 aa overlap (145-343:102-309) 120 130 140 150 160 170 pF1KE1 VLQAQLTWVRVSHEHLLQRVDNFTQNPGMFRIKGEQGAPGLQGHKGAMGM-PGAPGPPGP : .. :: : :. . . : :: :: XP_005 STSTDAMLGTLTPLSSLLLLLLVLVLGCGPRASSGGGAGGAAGYAPVKYIQPMQKGPVGP 80 90 100 110 120 130 180 190 200 210 220 230 pF1KE1 PAEKGAKGAMGRDGATGP---SGPQGPPGVKGEAGLQGPQGAPGKQGATGTPGPQGEKGS : ..: . : .: :::: : : :: : ::: : : :: .:. : XP_005 PFREGKGQYLEMPLPLLPMDLKGEPGPPGKPGPRGPPGPPGFPGKPGM-GKPGLHGQPGP 140 150 160 170 180 190 240 250 260 270 280 pF1KE1 KGDGGL--IGPKGETGTKGEKGDLGLPGSKGDRGMKGDAGVMGPPGAQGSKGDFGR--PG : :. .: : : :. : : :: .:. :..:: :. :::: : : : :: XP_005 AGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITIPG 200 210 220 230 240 250 290 300 310 320 330 340 pF1KE1 PPGLAGFPGAKGDQGQPGLQGVPGPPGAVGHPGAKG--EPGSAGSPGRAGLPGSPGSPGA :: : :: : ::.:: :: ::::: : : .: .:: :.::..: :: :: :: XP_005 KPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGP 260 270 280 290 300 310 350 360 370 380 390 400 pF1KE1 TGLKGSKGDTGLQGQQGRKGESGVPGPAGVKGEQGSPGLAGPKGAPGQAGQKGDQGVKGS XP_005 AGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQG 320 330 340 350 360 370 520 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 22:50:04 2016 done: Sun Nov 6 22:50:06 2016 Total Scan time: 11.780 Total Display time: 0.140 Function used was FASTA [36.3.4 Apr, 2011]