(Linear) (Six-base) MAPSORT of: KIEE1339.seq Check: 4636 from: 1 to: 1560 KIEE1339.orf With 182 enzymes: SgfI * December 17, 2009 16:57 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 0 528 1105 1560 Size: 528 577 455 Fragments arranged by size: 577 528 455 AccI GT'mk_AC Cuts at: 0 401 1560 Size: 401 1159 Acc65I G'GTAC_C Cuts at: 0 1321 1560 Size: 1321 239 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1325 1560 Size: 1325 235 AhdI GACnn_n'nnGTC Cuts at: 0 273 1560 Size: 273 1287 AleI CACnn'nnGTG Cuts at: 0 953 1560 Size: 953 607 AlwNI CAG_nnn'CTG Cuts at: 0 1111 1560 Size: 1111 449 ApaI G_GGCC'C Cuts at: 0 931 1410 1560 Size: 931 479 150 Fragments arranged by size: 931 479 150 ApoI r'AATT_y Cuts at: 0 14 1356 1560 Size: 14 1342 204 Fragments arranged by size: 1342 204 14 AvaI C'yCGr_G Cuts at: 0 573 1015 1560 Size: 573 442 545 Fragments arranged by size: 573 545 442 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 0 1305 1338 1560 Size: 1305 33 222 Fragments arranged by size: 1305 222 33 BanI G'GyrC_C Cuts at: 0 451 496 658 955 1321 1560 Size: 451 45 162 297 366 239 Fragments arranged by size: 451 366 297 239 162 45 BanII G_rGCy'C Cuts at: 0 35 825 931 1015 1141 1167 1410 1560 Size: 35 790 106 84 126 26 243 150 Fragments arranged by size: 790 243 150 126 106 84 35 26 BbeI G_GCGC'C Cuts at: 0 455 1560 Size: 455 1105 BbsI GAAGACnn'nnnn_ Cuts at: 0 454 1365 1560 Size: 454 911 195 Fragments arranged by size: 911 454 195 BbvCI CC'TCA_GC Cuts at: 0 263 1560 Size: 263 1297 BglI GCCn_nnn'nGGC Cuts at: 0 541 1560 Size: 541 1019 BglII A'GATC_T Cuts at: 0 1439 1560 Size: 1439 121 Bme1580I G_kGCm'C Cuts at: 0 501 931 1410 1471 1560 Size: 501 430 479 61 89 Fragments arranged by size: 501 479 430 89 61 BmrI ACTGGGnnnn_n' Cuts at: 0 1442 1560 Size: 1442 118 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 250 326 620 839 902 1560 Size: 250 76 294 219 63 658 Fragments arranged by size: 658 294 250 219 76 63 Bpu10I CC'TnA_GC Cuts at: 0 263 320 1560 Size: 263 57 1240 Fragments arranged by size: 1240 263 57 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 4 57 1560 Size: 4 53 1503 Fragments arranged by size: 1503 53 4 BsaI GGTCTCn'nnnn_ Cuts at: 0 37 709 743 763 1184 1560 Size: 37 672 34 20 421 376 Fragments arranged by size: 672 421 376 37 34 20 BsaHI Gr'CG_yC Cuts at: 0 452 1560 Size: 452 1108 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 0 822 852 1560 Size: 822 30 708 Fragments arranged by size: 822 708 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 0 126 1546 1560 Size: 126 1420 14 Fragments arranged by size: 1420 126 14 BseYI C'CCAG_C Cuts at: 0 178 1386 1505 1560 Size: 178 1208 119 55 Fragments arranged by size: 1208 178 119 55 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 0 959 1476 1560 Size: 959 517 84 Fragments arranged by size: 959 517 84 BsiHKAI G_wGCw'C Cuts at: 0 35 386 636 1560 Size: 35 351 250 924 Fragments arranged by size: 924 351 250 35 Bsp1286I G_dGCh'C Cuts at: 0 35 386 501 636 825 931 1015 1141 Size: 35 351 115 135 189 106 84 126 Cuts at: 1141 1167 1410 1471 1560 Size: 26 243 61 89 Fragments arranged by size: 351 243 189 135 126 115 106 89 84 61 35 26 BspHI T'CATG_A Cuts at: 0 1515 1560 Size: 1515 45 BspMI ACCTGCnnnn'nnnn_ Cuts at: 0 528 1105 1141 1560 Size: 528 577 36 419 Fragments arranged by size: 577 528 419 36 BsrDI GCAATG_nn' Cuts at: 0 80 1560 Size: 80 1480 BsrGI T'GTAC_A Cuts at: 0 1412 1560 Size: 1412 148 BssSI C'ACGA_G Cuts at: 0 1528 1560 Size: 1528 32 BstAPI GCAn_nnn'nTGC Cuts at: 0 345 390 1560 Size: 345 45 1170 Fragments arranged by size: 1170 345 45 BstBI TT'CG_AA Cuts at: 0 86 1560 Size: 86 1474 BstYI r'GATC_y Cuts at: 0 1207 1439 1560 Size: 1207 232 121 Fragments arranged by size: 1207 232 121 BtgI C'CryG_G Cuts at: 0 482 1560 Size: 482 1078 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 0 710 1355 1560 Size: 710 645 205 Fragments arranged by size: 710 645 205 BtsI GCAGTG_nn' Cuts at: 0 947 981 1560 Size: 947 34 579 Fragments arranged by size: 947 579 34 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 0 848 883 1560 Size: 848 35 677 Fragments arranged by size: 848 677 35 EaeI y'GGCC_r Cuts at: 0 1179 1560 Size: 1179 381 EcoICRI GAG'CTC Cuts at: 0 33 1560 Size: 33 1527 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 250 326 620 839 902 1325 1560 Size: 250 76 294 219 63 423 235 Fragments arranged by size: 423 294 250 235 219 76 63 EcoNI CCTnn'n_nnAGG Cuts at: 0 319 1560 Size: 319 1241 EcoO109I rG'GnC_Cy Cuts at: 0 225 568 577 622 667 811 928 1108 Size: 225 343 9 45 45 144 117 180 Cuts at: 1108 1153 1406 1407 1560 Size: 45 253 1 153 Fragments arranged by size: 343 253 225 180 153 144 117 45 45 45 9 1 HaeII r_GCGC'y Cuts at: 0 179 455 1560 Size: 179 276 1105 Fragments arranged by size: 1105 276 179 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 0 259 291 1560 Size: 259 32 1269 Fragments arranged by size: 1269 259 32 KasI G'GCGC_C Cuts at: 0 451 1560 Size: 451 1109 KpnI G_GTAC'C Cuts at: 0 1325 1560 Size: 1325 235 MscI TGG'CCA Cuts at: 0 1181 1560 Size: 1181 379 MslI CAynn'nnrTG Cuts at: 0 487 953 1560 Size: 487 466 607 Fragments arranged by size: 607 487 466 MspA1I CmG'CkG Cuts at: 0 172 396 1560 Size: 172 224 1164 Fragments arranged by size: 1164 224 172 NarI GG'CG_CC Cuts at: 0 452 1560 Size: 452 1108 NcoI C'CATG_G Cuts at: 0 482 1560 Size: 482 1078 NspI r_CATG'y Cuts at: 0 492 1386 1560 Size: 492 894 174 Fragments arranged by size: 894 492 174 PasI CC'CwG_GG Cuts at: 0 421 627 825 988 1141 1560 Size: 421 206 198 163 153 419 Fragments arranged by size: 421 419 206 198 163 153 PfoI T'CCnGG_A Cuts at: 0 227 816 879 1023 1560 Size: 227 589 63 144 537 Fragments arranged by size: 589 537 227 144 63 PpuMI rG'GwC_Cy Cuts at: 0 225 577 622 667 1153 1560 Size: 225 352 45 45 486 407 Fragments arranged by size: 486 407 352 225 45 45 PshAI GACnn'nnGTC Cuts at: 0 755 1560 Size: 755 805 PspOMI G'GGCC_C Cuts at: 0 927 1406 1560 Size: 927 479 154 Fragments arranged by size: 927 479 154 PstI C_TGCA'G Cuts at: 0 212 293 350 395 917 1116 1525 1560 Size: 212 81 57 45 522 199 409 35 Fragments arranged by size: 522 409 212 199 81 57 45 35 SacI G_AGCT'C Cuts at: 0 35 1560 Size: 35 1525 SanDI GG'GwC_CC Cuts at: 0 577 1560 Size: 577 983 SbfI CC_TGCA'GG Cuts at: 0 350 1116 1560 Size: 350 766 444 Fragments arranged by size: 766 444 350 SexAI A'CCwGG_T Cuts at: 0 861 1560 Size: 861 699 SfcI C'TryA_G Cuts at: 0 208 289 346 391 913 1112 1314 1521 Size: 208 81 57 45 522 199 202 207 Cuts at: 1521 1560 Size: 39 Fragments arranged by size: 522 208 207 202 199 81 57 45 39 SfoI GGC'GCC Cuts at: 0 453 1560 Size: 453 1107 SmaI CCC'GGG Cuts at: 0 1017 1560 Size: 1017 543 SmlI C'TyrA_G Cuts at: 0 19 36 1560 Size: 19 17 1524 Fragments arranged by size: 1524 19 17 SphI G_CATG'C Cuts at: 0 492 1386 1560 Size: 492 894 174 Fragments arranged by size: 894 492 174 StuI AGG'CCT Cuts at: 0 1037 1560 Size: 1037 523 StyI C'CwwG_G Cuts at: 0 482 536 582 618 672 959 1157 1560 Size: 482 54 46 36 54 287 198 403 Fragments arranged by size: 482 403 287 198 54 54 46 36 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 0 965 1560 Size: 965 595 TatI w'GTAC_w Cuts at: 0 1412 1560 Size: 1412 148 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 822 854 1560 Size: 822 32 706 Fragments arranged by size: 822 706 32 XcmI CCAnnnn_n'nnnnTGG Cuts at: 0 543 1560 Size: 543 1017 XmaI C'CCGG_G Cuts at: 0 1015 1560 Size: 1015 545 Enzymes that do cut: AarI AccI Acc65I AcuI AhdI AleI AlwNI ApaI ApoI AvaI BaeI BanI BanII BbeI BbsI BbvCI BglI BglII Bme1580I BmrI BpmI Bpu10I BpuEI BsaI BsaHI BsaXI BseRI BseYI BsgI BsiHKAI Bsp1286I BspHI BspMI BsrDI BsrGI BssSI BstAPI BstBI BstYI BtgI BtgZI BtsI CspCI EaeI EcoICRI Eco57MI EcoNI EcoO109I HaeII Hin4I KasI KpnI MscI MslI MspA1I NarI NcoI NspI PasI PfoI PpuMI PshAI PspOMI PstI SacI SanDI SbfI SexAI SfcI SfoI SmaI SmlI SphI StuI StyI TaqII TatI TstI XcmI XmaI Enzymes that do not cut: AatII AclI AfeI AflII AflIII AgeI AlfI AloI ApaLI AscI AseI AsiSI AvrII BamHI BcgI BciVI BclI BfrBI BlpI BmgBI BmtI BplI BsaAI BsaBI BsaWI BsiEI BsiWI BsmI BsmBI BspEI BsrBI BsrFI BssHII BstEII BstXI BstZ17I Bsu36I ClaI DraI DraIII DrdI EagI EarI EciI EcoRI EcoRV FalI FseI FspI FspAI HincII HindIII HpaI MfeI MluI MmeI NaeI NdeI NgoMIV NheI NotI NruI NsiI PacI PciI PflMI PmeI PmlI PpiI PsiI PspXI PsrI PvuI PvuII RsrII SacII SalI SapI ScaI SfiI SgfI SgrAI SnaBI SpeI SrfI SspI SwaI Tth111I XbaI XhoI XmnI ZraI