Result of FASTA (omim) for pFN21AE1341
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1341, 166 aa
  1>>>pF1KE1341 166 - 166 aa - 166 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2577+/-0.000371; mu= 12.5020+/- 0.023
 mean_var=75.2652+/-15.136, 0's: 0 Z-trim(113.9): 146  B-trim: 23 in 1/51
 Lambda= 0.147835
 statistics sampled from 23288 (23468) to 23288 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.275), width:  16
 Scan time:  5.270

The best scores are:                                      opt bits E(85289)
NP_000423 (OMIM: 160781,608758) myosin regulatory  ( 166) 1086 240.7 8.4e-64
XP_016863735 (OMIM: 160782) PREDICTED: myosin ligh ( 173)  743 167.5 9.1e-42
NP_002468 (OMIM: 160782) myosin light chain 5 [Hom ( 173)  743 167.5 9.1e-42
XP_016863734 (OMIM: 160782) PREDICTED: myosin ligh ( 173)  743 167.5 9.1e-42
XP_006713949 (OMIM: 160782) PREDICTED: myosin ligh ( 328)  736 166.2 4.2e-41
NP_067046 (OMIM: 613993) myosin regulatory light c ( 175)  692 156.7 1.7e-38
NP_291024 (OMIM: 609211) myosin regulatory light c ( 172)  626 142.6 2.9e-34
NP_001138416 (OMIM: 609211) myosin regulatory ligh ( 172)  626 142.6 2.9e-34
NP_001138417 (OMIM: 609211) myosin regulatory ligh ( 172)  626 142.6 2.9e-34
NP_006088 (OMIM: 609905) myosin regulatory light p ( 172)  621 141.5 6.2e-34
XP_016863737 (OMIM: 160782) PREDICTED: myosin ligh ( 132)  590 134.8 4.9e-32
XP_016863736 (OMIM: 160782) PREDICTED: myosin ligh ( 132)  590 134.8 4.9e-32
XP_011513766 (OMIM: 613993) PREDICTED: myosin regu ( 208)  556 127.7 1.1e-29
XP_016867967 (OMIM: 613993) PREDICTED: myosin regu ( 132)  503 116.3 1.9e-26
XP_011513767 (OMIM: 613993) PREDICTED: myosin regu ( 163)  503 116.3 2.2e-26
XP_011513765 (OMIM: 613993) PREDICTED: myosin regu ( 231)  443 103.6 2.1e-22
XP_016867968 (OMIM: 613993) PREDICTED: myosin regu (  99)  433 101.2 4.7e-22
XP_005249874 (OMIM: 613993) PREDICTED: myosin regu ( 155)  390 92.2 3.8e-19
NP_008819 (OMIM: 114180,614916,616247) calmodulin  ( 149)  318 76.8 1.6e-14
NP_001734 (OMIM: 114182,616249) calmodulin isoform ( 149)  318 76.8 1.6e-14
NP_001316851 (OMIM: 114183) calmodulin isoform 1 [ ( 149)  318 76.8 1.6e-14
NP_005175 (OMIM: 114183) calmodulin isoform 1 [Hom ( 149)  318 76.8 1.6e-14
XP_006720321 (OMIM: 114180,614916,616247) PREDICTE ( 150)  318 76.8 1.6e-14
NP_001292553 (OMIM: 114182,616249) calmodulin isof ( 197)  318 76.9 1.9e-14
NP_005176 (OMIM: 114184) calmodulin-like protein 3 ( 149)  306 74.3 9.2e-14
NP_852667 (OMIM: 609905) myosin regulatory light p ( 118)  251 62.5 2.6e-10
NP_001292554 (OMIM: 114182,616249) calmodulin isof ( 113)  236 59.3 2.3e-09
NP_001316853 (OMIM: 114183) calmodulin isoform 2 [ ( 113)  236 59.3 2.3e-09
NP_001292555 (OMIM: 114182,616249) calmodulin isof ( 113)  236 59.3 2.3e-09
NP_001316855 (OMIM: 114183) calmodulin isoform 2 [ ( 113)  236 59.3 2.3e-09
NP_001316850 (OMIM: 114183) calmodulin isoform 2 [ ( 113)  236 59.3 2.3e-09
NP_001316854 (OMIM: 114183) calmodulin isoform 2 [ ( 113)  236 59.3 2.3e-09
NP_001316852 (OMIM: 114183) calmodulin isoform 2 [ ( 113)  236 59.3 2.3e-09
NP_001186558 (OMIM: 609930) myosin light chain 6B  ( 208)  238 59.9 2.8e-09
NP_002466 (OMIM: 609930) myosin light chain 6B [Ho ( 208)  238 59.9 2.8e-09
NP_004356 (OMIM: 602907) centrin-3 isoform 2 [Homo ( 167)  234 59.0 4.2e-09
NP_004335 (OMIM: 300006) centrin-2 [Homo sapiens]  ( 172)  234 59.0 4.3e-09
NP_524147 (OMIM: 609931) myosin light polypeptide  ( 151)  226 57.2 1.3e-08
NP_004057 (OMIM: 603187) centrin-1 [Homo sapiens]  ( 172)  220 56.0 3.4e-08
NP_001284694 (OMIM: 602907) centrin-3 isoform 1 [H ( 191)  220 56.0 3.7e-08
NP_066299 (OMIM: 609931) myosin light polypeptide  ( 151)  214 54.7 7.5e-08
NP_524144 (OMIM: 160780) myosin light chain 1/3, s ( 194)  211 54.1 1.4e-07
NP_524146 (OMIM: 160780) myosin light chain 1/3, s ( 150)  206 52.9 2.4e-07
NP_001317242 (OMIM: 610171) calmodulin-like protei ( 164)  198 51.3 8.5e-07
NP_619650 (OMIM: 610171) calmodulin-like protein 6 ( 181)  198 51.3 9.2e-07
XP_005244786 (OMIM: 610171) PREDICTED: calmodulin- ( 203)  198 51.3   1e-06
NP_062829 (OMIM: 607315) calcium-binding protein 5 ( 173)  197 51.1   1e-06
XP_016882481 (OMIM: 607315) PREDICTED: calcium-bin ( 284)  197 51.2 1.5e-06
NP_003270 (OMIM: 191039) troponin C, skeletal musc ( 160)  193 50.2 1.8e-06
NP_057450 (OMIM: 607314,614899) calcium-binding pr ( 220)  190 49.7 3.5e-06


>>NP_000423 (OMIM: 160781,608758) myosin regulatory ligh  (166 aa)
 initn: 1086 init1: 1086 opt: 1086  Z-score: 1266.5  bits: 240.7 E(85289): 8.4e-64
Smith-Waterman score: 1086; 100.0% identity (100.0% similar) in 166 aa overlap (1-166:1-166)

               10        20        30        40        50        60
pF1KE1 MAPKKAKKRAGGANSNVFSMFEQTQIQEFKEAFTIMDQNRDGFIDKNDLRDTFAALGRVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MAPKKAKKRAGGANSNVFSMFEQTQIQEFKEAFTIMDQNRDGFIDKNDLRDTFAALGRVN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VKNEEIDEMIKEAPGPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGKGVLKADYVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 VKNEEIDEMIKEAPGPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGKGVLKADYVR
               70        80        90       100       110       120

              130       140       150       160      
pF1KE1 EMLTTQAERFSKEEVDQMFAAFPPDVTGNLDYKNLVHIITHGEEKD
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_000 EMLTTQAERFSKEEVDQMFAAFPPDVTGNLDYKNLVHIITHGEEKD
              130       140       150       160      

>>XP_016863735 (OMIM: 160782) PREDICTED: myosin light ch  (173 aa)
 initn: 779 init1: 722 opt: 743  Z-score: 870.8  bits: 167.5 E(85289): 9.1e-42
Smith-Waterman score: 743; 64.0% identity (86.6% similar) in 172 aa overlap (1-166:1-172)

               10              20        30        40        50    
pF1KE1 MAPKKAKKRAGGA------NSNVFSMFEQTQIQEFKEAFTIMDQNRDGFIDKNDLRDTFA
       :: .:.::. :::      .::::: ::::::::::::::.:::::::::::.::.::.:
XP_016 MASRKTKKKEGGALRAQRASSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDTYA
               10        20        30        40        50        60

           60        70        80        90       100       110    
pF1KE1 ALGRVNVKNEEIDEMIKEAPGPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGKGVL
       .::..:::..:.: :.::: ::::::.::..:::::.:.: :::::::::..::.::: .
XP_016 SLGKTNVKDDELDAMLKEASGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKGKI
               70        80        90       100       110       120

          120       130       140       150       160       
pF1KE1 KADYVREMLTTQAERFSKEEVDQMFAAFPPDVTGNLDYKNLVHIITHGEEKD 
       . .:....: .::.... :::::::     ::.:::::: : ..:::::::. 
XP_016 NKEYIKRLLMSQADKMTAEEVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE
              130       140       150       160       170   

>>NP_002468 (OMIM: 160782) myosin light chain 5 [Homo sa  (173 aa)
 initn: 779 init1: 722 opt: 743  Z-score: 870.8  bits: 167.5 E(85289): 9.1e-42
Smith-Waterman score: 743; 64.0% identity (86.6% similar) in 172 aa overlap (1-166:1-172)

               10              20        30        40        50    
pF1KE1 MAPKKAKKRAGGA------NSNVFSMFEQTQIQEFKEAFTIMDQNRDGFIDKNDLRDTFA
       :: .:.::. :::      .::::: ::::::::::::::.:::::::::::.::.::.:
NP_002 MASRKTKKKEGGALRAQRASSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDTYA
               10        20        30        40        50        60

           60        70        80        90       100       110    
pF1KE1 ALGRVNVKNEEIDEMIKEAPGPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGKGVL
       .::..:::..:.: :.::: ::::::.::..:::::.:.: :::::::::..::.::: .
NP_002 SLGKTNVKDDELDAMLKEASGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKGKI
               70        80        90       100       110       120

          120       130       140       150       160       
pF1KE1 KADYVREMLTTQAERFSKEEVDQMFAAFPPDVTGNLDYKNLVHIITHGEEKD 
       . .:....: .::.... :::::::     ::.:::::: : ..:::::::. 
NP_002 NKEYIKRLLMSQADKMTAEEVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE
              130       140       150       160       170   

>>XP_016863734 (OMIM: 160782) PREDICTED: myosin light ch  (173 aa)
 initn: 779 init1: 722 opt: 743  Z-score: 870.8  bits: 167.5 E(85289): 9.1e-42
Smith-Waterman score: 743; 64.0% identity (86.6% similar) in 172 aa overlap (1-166:1-172)

               10              20        30        40        50    
pF1KE1 MAPKKAKKRAGGA------NSNVFSMFEQTQIQEFKEAFTIMDQNRDGFIDKNDLRDTFA
       :: .:.::. :::      .::::: ::::::::::::::.:::::::::::.::.::.:
XP_016 MASRKTKKKEGGALRAQRASSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDTYA
               10        20        30        40        50        60

           60        70        80        90       100       110    
pF1KE1 ALGRVNVKNEEIDEMIKEAPGPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGKGVL
       .::..:::..:.: :.::: ::::::.::..:::::.:.: :::::::::..::.::: .
XP_016 SLGKTNVKDDELDAMLKEASGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKGKI
               70        80        90       100       110       120

          120       130       140       150       160       
pF1KE1 KADYVREMLTTQAERFSKEEVDQMFAAFPPDVTGNLDYKNLVHIITHGEEKD 
       . .:....: .::.... :::::::     ::.:::::: : ..:::::::. 
XP_016 NKEYIKRLLMSQADKMTAEEVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE
              130       140       150       160       170   

>>XP_006713949 (OMIM: 160782) PREDICTED: myosin light ch  (328 aa)
 initn: 772 init1: 722 opt: 736  Z-score: 858.9  bits: 166.2 E(85289): 4.2e-41
Smith-Waterman score: 736; 63.7% identity (86.5% similar) in 171 aa overlap (2-166:157-327)

                                            10              20     
pF1KE1                              MAPKKAKKRAGGA------NSNVFSMFEQTQ
                                     : .:.::. :::      .::::: :::::
XP_006 PPSASWPCVHTPDCGPGRTLSSCAERRRPEASRKTKKKEGGALRAQRASSNVFSNFEQTQ
        130       140       150       160       170       180      

          30        40        50        60        70        80     
pF1KE1 IQEFKEAFTIMDQNRDGFIDKNDLRDTFAALGRVNVKNEEIDEMIKEAPGPINFTVFLTM
       :::::::::.:::::::::::.::.::.:.::..:::..:.: :.::: ::::::.::..
XP_006 IQEFKEAFTLMDQNRDGFIDKEDLKDTYASLGKTNVKDDELDAMLKEASGPINFTMFLNL
        190       200       210       220       230       240      

          90       100       110       120       130       140     
pF1KE1 FGEKLKGADPEETILNAFKVFDPEGKGVLKADYVREMLTTQAERFSKEEVDQMFAAFPPD
       :::::.:.: :::::::::..::.::: .. .:....: .::.... :::::::     :
XP_006 FGEKLSGTDAEETILNAFKMLDPDGKGKINKEYIKRLLMSQADKMTAEEVDQMFQFASID
        250       260       270       280       290       300      

         150       160       
pF1KE1 VTGNLDYKNLVHIITHGEEKD 
       :.:::::: : ..:::::::. 
XP_006 VAGNLDYKALSYVITHGEEKEE
        310       320        

>>NP_067046 (OMIM: 613993) myosin regulatory light chain  (175 aa)
 initn: 716 init1: 680 opt: 692  Z-score: 812.0  bits: 156.7 E(85289): 1.7e-38
Smith-Waterman score: 692; 62.7% identity (87.0% similar) in 161 aa overlap (6-166:14-174)

                       10        20        30        40        50  
pF1KE1         MAPKKAKKRAGGANSNVFSMFEQTQIQEFKEAFTIMDQNRDGFIDKNDLRDT
                    : :.:  ..:::::::::.:::::::::. .::::::.: : :::.:
NP_067 MASRKAGTRGKVAATKQAQRGSSNVFSMFEQAQIQEFKEAFSCIDQNRDGIICKADLRET
               10        20        30        40        50        60

             60        70        80        90       100       110  
pF1KE1 FAALGRVNVKNEEIDEMIKEAPGPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGKG
       .. ::.:.: .::.: :..:. ::::::::::.:::::.:.::::.::.::..::: :::
NP_067 YSQLGKVSVPEEELDAMLQEGKGPINFTVFLTLFGEKLNGTDPEEAILSAFRMFDPSGKG
               70        80        90       100       110       120

            120       130       140       150       160       
pF1KE1 VLKADYVREMLTTQAERFSKEEVDQMFAAFPPDVTGNLDYKNLVHIITHGEEKD 
       :.. :  ...: :::..::  ::.::::  : :..::.:::.: .:::::.::. 
NP_067 VVNKDEFKQLLLTQADKFSPAEVEQMFALTPMDLAGNIDYKSLCYIITHGDEKEE
              130       140       150       160       170     

>>NP_291024 (OMIM: 609211) myosin regulatory light chain  (172 aa)
 initn: 617 init1: 379 opt: 626  Z-score: 736.0  bits: 142.6 E(85289): 2.9e-34
Smith-Waterman score: 626; 56.7% identity (83.5% similar) in 164 aa overlap (4-166:9-171)

                    10        20        30        40        50     
pF1KE1      MAPKKAKKRAGGANSNVFSMFEQTQIQEFKEAFTIMDQNRDGFIDKNDLRDTFAA
               : .:::   :.::::.::.:.:::::::::...::::::::::.::.: .:.
NP_291 MSSKKAKTKTTKKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLAS
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KE1 LGRVNVKNEEIDEMIKEAPGPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGKGVLK
       ::. :  .  .: :..:::::::::.:::::::::.:.:::..: :::  :: :. :...
NP_291 LGK-NPTDAYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQ
                70        80        90       100       110         

         120       130       140       150       160        
pF1KE1 ADYVREMLTTQAERFSKEEVDQMFAAFPPDVTGNLDYKNLVHIITHG-EEKD 
        ::.::.:::...::. ::::...   : :  ::..: ....:. :: ..:: 
NP_291 EDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD
     120       130       140       150       160       170  

>>NP_001138416 (OMIM: 609211) myosin regulatory light ch  (172 aa)
 initn: 617 init1: 379 opt: 626  Z-score: 736.0  bits: 142.6 E(85289): 2.9e-34
Smith-Waterman score: 626; 56.7% identity (83.5% similar) in 164 aa overlap (4-166:9-171)

                    10        20        30        40        50     
pF1KE1      MAPKKAKKRAGGANSNVFSMFEQTQIQEFKEAFTIMDQNRDGFIDKNDLRDTFAA
               : .:::   :.::::.::.:.:::::::::...::::::::::.::.: .:.
NP_001 MSSKKAKTKTTKKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLAS
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KE1 LGRVNVKNEEIDEMIKEAPGPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGKGVLK
       ::. :  .  .: :..:::::::::.:::::::::.:.:::..: :::  :: :. :...
NP_001 LGK-NPTDAYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQ
                70        80        90       100       110         

         120       130       140       150       160        
pF1KE1 ADYVREMLTTQAERFSKEEVDQMFAAFPPDVTGNLDYKNLVHIITHG-EEKD 
        ::.::.:::...::. ::::...   : :  ::..: ....:. :: ..:: 
NP_001 EDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD
     120       130       140       150       160       170  

>>NP_001138417 (OMIM: 609211) myosin regulatory light ch  (172 aa)
 initn: 617 init1: 379 opt: 626  Z-score: 736.0  bits: 142.6 E(85289): 2.9e-34
Smith-Waterman score: 626; 56.7% identity (83.5% similar) in 164 aa overlap (4-166:9-171)

                    10        20        30        40        50     
pF1KE1      MAPKKAKKRAGGANSNVFSMFEQTQIQEFKEAFTIMDQNRDGFIDKNDLRDTFAA
               : .:::   :.::::.::.:.:::::::::...::::::::::.::.: .:.
NP_001 MSSKKAKTKTTKKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLAS
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KE1 LGRVNVKNEEIDEMIKEAPGPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGKGVLK
       ::. :  .  .: :..:::::::::.:::::::::.:.:::..: :::  :: :. :...
NP_001 LGK-NPTDAYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQ
                70        80        90       100       110         

         120       130       140       150       160        
pF1KE1 ADYVREMLTTQAERFSKEEVDQMFAAFPPDVTGNLDYKNLVHIITHG-EEKD 
        ::.::.:::...::. ::::...   : :  ::..: ....:. :: ..:: 
NP_001 EDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD
     120       130       140       150       160       170  

>>NP_006088 (OMIM: 609905) myosin regulatory light polyp  (172 aa)
 initn: 614 init1: 376 opt: 621  Z-score: 730.3  bits: 141.5 E(85289): 6.2e-34
Smith-Waterman score: 621; 56.7% identity (84.1% similar) in 164 aa overlap (4-166:9-171)

                    10        20        30        40        50     
pF1KE1      MAPKKAKKRAGGANSNVFSMFEQTQIQEFKEAFTIMDQNRDGFIDKNDLRDTFAA
               : .:::   :.::::.::.:.:::::::::...::::::::::.::.: .:.
NP_006 MSSKRAKAKTTKKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLAS
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KE1 LGRVNVKNEEIDEMIKEAPGPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGKGVLK
       ::. :  .: .. :..:::::::::.:::::::::.:.:::..: :::  :: :..: ..
NP_006 LGK-NPTDEYLEGMMSEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIH
                70        80        90       100       110         

         120       130       140       150       160        
pF1KE1 ADYVREMLTTQAERFSKEEVDQMFAAFPPDVTGNLDYKNLVHIITHG-EEKD 
        :..::.:::...::. ::::.:.   : :  ::..: ....:. :: ..:: 
NP_006 EDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRILKHGAKDKDD
     120       130       140       150       160       170  




166 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:51:17 2016 done: Sun Nov  6 22:51:18 2016
 Total Scan time:  5.270 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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