FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1316, 273 aa 1>>>pF1KE1316 273 - 273 aa - 273 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8176+/-0.000306; mu= 15.1328+/- 0.019 mean_var=109.2920+/-22.389, 0's: 0 Z-trim(119.2): 6 B-trim: 0 in 0/54 Lambda= 0.122682 statistics sampled from 32986 (32992) to 32986 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.387), width: 16 Scan time: 5.850 The best scores are: opt bits E(85289) NP_000371 (OMIM: 278700,611153) DNA repair protein ( 273) 1832 334.2 1.6e-91 XP_006717341 (OMIM: 278700,611153) PREDICTED: DNA ( 262) 1715 313.5 2.7e-85 XP_016870603 (OMIM: 278700,611153) PREDICTED: DNA ( 231) 1488 273.2 3e-73 >>NP_000371 (OMIM: 278700,611153) DNA repair protein com (273 aa) initn: 1832 init1: 1832 opt: 1832 Z-score: 1764.1 bits: 334.2 E(85289): 1.6e-91 Smith-Waterman score: 1832; 100.0% identity (100.0% similar) in 273 aa overlap (1-273:1-273) 10 20 30 40 50 60 pF1KE1 MAAADGALPEAAALEQPAELPASVRASIERKRQRALMLRQARLAARPYSATAAAATGGMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MAAADGALPEAAALEQPAELPASVRASIERKRQRALMLRQARLAARPYSATAAAATGGMA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 NVKAAPKIIDTGGGFILEEEEEEEQKIGKVVHQPGPVMEFDYVICEECGKEFMDSYLMNH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 NVKAAPKIIDTGGGFILEEEEEEEQKIGKVVHQPGPVMEFDYVICEECGKEFMDSYLMNH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 FDLPTCDNCRDADDKHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 FDLPTCDNCRDADDKHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 YLKLQIVKRSLEVWGSQEALEEAKEVRQENREKMKQKKFDKKVKELRRAVRSSVWKRETI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 YLKLQIVKRSLEVWGSQEALEEAKEVRQENREKMKQKKFDKKVKELRRAVRSSVWKRETI 190 200 210 220 230 240 250 260 270 pF1KE1 VHQHEYGPEENLEDDMYRKTCTMCGHELTYEKM ::::::::::::::::::::::::::::::::: NP_000 VHQHEYGPEENLEDDMYRKTCTMCGHELTYEKM 250 260 270 >>XP_006717341 (OMIM: 278700,611153) PREDICTED: DNA repa (262 aa) initn: 1715 init1: 1715 opt: 1715 Z-score: 1652.4 bits: 313.5 E(85289): 2.7e-85 Smith-Waterman score: 1715; 100.0% identity (100.0% similar) in 257 aa overlap (1-257:1-257) 10 20 30 40 50 60 pF1KE1 MAAADGALPEAAALEQPAELPASVRASIERKRQRALMLRQARLAARPYSATAAAATGGMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MAAADGALPEAAALEQPAELPASVRASIERKRQRALMLRQARLAARPYSATAAAATGGMA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 NVKAAPKIIDTGGGFILEEEEEEEQKIGKVVHQPGPVMEFDYVICEECGKEFMDSYLMNH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 NVKAAPKIIDTGGGFILEEEEEEEQKIGKVVHQPGPVMEFDYVICEECGKEFMDSYLMNH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 FDLPTCDNCRDADDKHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 FDLPTCDNCRDADDKHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 YLKLQIVKRSLEVWGSQEALEEAKEVRQENREKMKQKKFDKKVKELRRAVRSSVWKRETI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 YLKLQIVKRSLEVWGSQEALEEAKEVRQENREKMKQKKFDKKVKELRRAVRSSVWKRETI 190 200 210 220 230 240 250 260 270 pF1KE1 VHQHEYGPEENLEDDMYRKTCTMCGHELTYEKM ::::::::::::::::: XP_006 VHQHEYGPEENLEDDMYPLKYQ 250 260 >>XP_016870603 (OMIM: 278700,611153) PREDICTED: DNA repa (231 aa) initn: 1488 init1: 1488 opt: 1488 Z-score: 1436.0 bits: 273.2 E(85289): 3e-73 Smith-Waterman score: 1488; 98.6% identity (99.1% similar) in 220 aa overlap (54-273:12-231) 30 40 50 60 70 80 pF1KE1 VRASIERKRQRALMLRQARLAARPYSATAAAATGGMANVKAAPKIIDTGGGFILEEEEEE :. :::::::::::::::::::::::::: XP_016 MFILTPKLQIPATFDGMANVKAAPKIIDTGGGFILEEEEEE 10 20 30 40 90 100 110 120 130 140 pF1KE1 EQKIGKVVHQPGPVMEFDYVICEECGKEFMDSYLMNHFDLPTCDNCRDADDKHKLITKTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 EQKIGKVVHQPGPVMEFDYVICEECGKEFMDSYLMNHFDLPTCDNCRDADDKHKLITKTE 50 60 70 80 90 100 150 160 170 180 190 200 pF1KE1 AKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKLYLKLQIVKRSLEVWGSQEALEEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 AKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKLYLKLQIVKRSLEVWGSQEALEEA 110 120 130 140 150 160 210 220 230 240 250 260 pF1KE1 KEVRQENREKMKQKKFDKKVKELRRAVRSSVWKRETIVHQHEYGPEENLEDDMYRKTCTM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KEVRQENREKMKQKKFDKKVKELRRAVRSSVWKRETIVHQHEYGPEENLEDDMYRKTCTM 170 180 190 200 210 220 270 pF1KE1 CGHELTYEKM :::::::::: XP_016 CGHELTYEKM 230 273 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 22:54:45 2016 done: Sun Nov 6 22:54:45 2016 Total Scan time: 5.850 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]