Result of FASTA (ccds) for pFN21AE1316
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1316, 273 aa
  1>>>pF1KE1316 273 - 273 aa - 273 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8767+/-0.000741; mu= 8.8363+/- 0.045
 mean_var=105.6105+/-21.760, 0's: 0 Z-trim(112.3): 5  B-trim: 751 in 1/50
 Lambda= 0.124802
 statistics sampled from 13049 (13053) to 13049 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.744), E-opt: 0.2 (0.401), width:  16
 Scan time:  2.640

The best scores are:                                      opt bits E(32554)
CCDS6729.1 XPA gene_id:7507|Hs108|chr9             ( 273) 1832 339.7 1.4e-93


>>CCDS6729.1 XPA gene_id:7507|Hs108|chr9                  (273 aa)
 initn: 1832 init1: 1832 opt: 1832  Z-score: 1793.7  bits: 339.7 E(32554): 1.4e-93
Smith-Waterman score: 1832; 100.0% identity (100.0% similar) in 273 aa overlap (1-273:1-273)

               10        20        30        40        50        60
pF1KE1 MAAADGALPEAAALEQPAELPASVRASIERKRQRALMLRQARLAARPYSATAAAATGGMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 MAAADGALPEAAALEQPAELPASVRASIERKRQRALMLRQARLAARPYSATAAAATGGMA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 NVKAAPKIIDTGGGFILEEEEEEEQKIGKVVHQPGPVMEFDYVICEECGKEFMDSYLMNH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 NVKAAPKIIDTGGGFILEEEEEEEQKIGKVVHQPGPVMEFDYVICEECGKEFMDSYLMNH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 FDLPTCDNCRDADDKHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 FDLPTCDNCRDADDKHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 YLKLQIVKRSLEVWGSQEALEEAKEVRQENREKMKQKKFDKKVKELRRAVRSSVWKRETI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 YLKLQIVKRSLEVWGSQEALEEAKEVRQENREKMKQKKFDKKVKELRRAVRSSVWKRETI
              190       200       210       220       230       240

              250       260       270   
pF1KE1 VHQHEYGPEENLEDDMYRKTCTMCGHELTYEKM
       :::::::::::::::::::::::::::::::::
CCDS67 VHQHEYGPEENLEDDMYRKTCTMCGHELTYEKM
              250       260       270   




273 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:54:44 2016 done: Sun Nov  6 22:54:44 2016
 Total Scan time:  2.640 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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