FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1513, 181 aa 1>>>pF1KE1513 181 - 181 aa - 181 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2034+/-0.000305; mu= 13.0864+/- 0.019 mean_var=63.0989+/-12.465, 0's: 0 Z-trim(115.0): 33 B-trim: 36 in 1/57 Lambda= 0.161459 statistics sampled from 25231 (25257) to 25231 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.296), width: 16 Scan time: 5.510 The best scores are: opt bits E(85289) NP_008984 (OMIM: 604463) CD160 antigen precursor [ ( 181) 1203 288.5 4.1e-78 XP_005272986 (OMIM: 604463) PREDICTED: CD160 antig ( 234) 1196 286.9 1.6e-77 XP_011507406 (OMIM: 604463) PREDICTED: CD160 antig ( 234) 1196 286.9 1.6e-77 >>NP_008984 (OMIM: 604463) CD160 antigen precursor [Homo (181 aa) initn: 1203 init1: 1203 opt: 1203 Z-score: 1523.4 bits: 288.5 E(85289): 4.1e-78 Smith-Waterman score: 1203; 100.0% identity (100.0% similar) in 181 aa overlap (1-181:1-181) 10 20 30 40 50 60 pF1KE1 MLLEPGRGCCALAILLAIVDIQSGGCINITSSASQEGTRLNLICTVWHKKEEAEGFVVFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 MLLEPGRGCCALAILLAIVDIQSGGCINITSSASQEGTRLNLICTVWHKKEEAEGFVVFL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 CKDRSGDCSPETSLKQLRLKRDPGIDGVGEISSQLMFTISQVTPLHSGTYQCCARSQKSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 CKDRSGDCSPETSLKQLRLKRDPGIDGVGEISSQLMFTISQVTPLHSGTYQCCARSQKSG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 IRLQGHFFSILFTETGNYTVTGLKQRQHLEFSHNEGTLSSGFLQEKVWVMLVTSLVALQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 IRLQGHFFSILFTETGNYTVTGLKQRQHLEFSHNEGTLSSGFLQEKVWVMLVTSLVALQA 130 140 150 160 170 180 pF1KE1 L : NP_008 L >>XP_005272986 (OMIM: 604463) PREDICTED: CD160 antigen i (234 aa) initn: 1213 init1: 1196 opt: 1196 Z-score: 1512.9 bits: 286.9 E(85289): 1.6e-77 Smith-Waterman score: 1196; 98.9% identity (100.0% similar) in 181 aa overlap (1-181:1-181) 10 20 30 40 50 60 pF1KE1 MLLEPGRGCCALAILLAIVDIQSGGCINITSSASQEGTRLNLICTVWHKKEEAEGFVVFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MLLEPGRGCCALAILLAIVDIQSGGCINITSSASQEGTRLNLICTVWHKKEEAEGFVVFL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 CKDRSGDCSPETSLKQLRLKRDPGIDGVGEISSQLMFTISQVTPLHSGTYQCCARSQKSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 CKDRSGDCSPETSLKQLRLKRDPGIDGVGEISSQLMFTISQVTPLHSGTYQCCARSQKSG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 IRLQGHFFSILFTETGNYTVTGLKQRQHLEFSHNEGTLSSGFLQEKVWVMLVTSLVALQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::. XP_005 IRLQGHFFSILFTETGNYTVTGLKQRQHLEFSHNEGTLSSGFLQEKVWVMLVTSLVALQG 130 140 150 160 170 180 pF1KE1 L . XP_005 MSKRAVSTPSNEGAIIFLPPWLFSRRRRLERMSRGREKCYSSPGYPQESSNQFH 190 200 210 220 230 >>XP_011507406 (OMIM: 604463) PREDICTED: CD160 antigen i (234 aa) initn: 1213 init1: 1196 opt: 1196 Z-score: 1512.9 bits: 286.9 E(85289): 1.6e-77 Smith-Waterman score: 1196; 98.9% identity (100.0% similar) in 181 aa overlap (1-181:1-181) 10 20 30 40 50 60 pF1KE1 MLLEPGRGCCALAILLAIVDIQSGGCINITSSASQEGTRLNLICTVWHKKEEAEGFVVFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MLLEPGRGCCALAILLAIVDIQSGGCINITSSASQEGTRLNLICTVWHKKEEAEGFVVFL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 CKDRSGDCSPETSLKQLRLKRDPGIDGVGEISSQLMFTISQVTPLHSGTYQCCARSQKSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 CKDRSGDCSPETSLKQLRLKRDPGIDGVGEISSQLMFTISQVTPLHSGTYQCCARSQKSG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 IRLQGHFFSILFTETGNYTVTGLKQRQHLEFSHNEGTLSSGFLQEKVWVMLVTSLVALQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::. XP_011 IRLQGHFFSILFTETGNYTVTGLKQRQHLEFSHNEGTLSSGFLQEKVWVMLVTSLVALQG 130 140 150 160 170 180 pF1KE1 L . XP_011 MSKRAVSTPSNEGAIIFLPPWLFSRRRRLERMSRGREKCYSSPGYPQESSNQFH 190 200 210 220 230 181 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 22:57:33 2016 done: Sun Nov 6 22:57:34 2016 Total Scan time: 5.510 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]