FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6237, 240 aa 1>>>pF1KE6237 240 - 240 aa - 240 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2155+/-0.000294; mu= 15.6855+/- 0.018 mean_var=78.1659+/-15.690, 0's: 0 Z-trim(118.6): 5 B-trim: 10 in 1/54 Lambda= 0.145066 statistics sampled from 31791 (31795) to 31791 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.742), E-opt: 0.2 (0.373), width: 16 Scan time: 6.280 The best scores are: opt bits E(85289) NP_003093 (OMIM: 185490) extracellular superoxide ( 240) 1662 356.6 2.2e-98 NP_000445 (OMIM: 105400,147450) superoxide dismuta ( 154) 355 82.9 3.4e-16 NP_005116 (OMIM: 603864) copper chaperone for supe ( 274) 292 70.0 4.9e-12 >>NP_003093 (OMIM: 185490) extracellular superoxide dism (240 aa) initn: 1662 init1: 1662 opt: 1662 Z-score: 1887.5 bits: 356.6 E(85289): 2.2e-98 Smith-Waterman score: 1662; 99.6% identity (100.0% similar) in 240 aa overlap (1-240:1-240) 10 20 30 40 50 60 pF1KE6 MLALLCSCLLLAAGASDAWTGEDSAEPNSDSAEWIRDMYAKVTEIWQEVMQRRDDDGTLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: NP_003 MLALLCSCLLLAAGASDAWTGEDSAEPNSDSAEWIRDMYAKVTEIWQEVMQRRDDDGALH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 AACQVQPSATLDAAQPRVTGVVLFRQLAPRAKLDAFFALEGFPTEPNSSSRAIHVHQFGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 AACQVQPSATLDAAQPRVTGVVLFRQLAPRAKLDAFFALEGFPTEPNSSSRAIHVHQFGD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 LSQGCESTGPHYNPLAVPHPQHPGDFGNFAVRDGSLWRYRAGLAASLAGPHSIVGRAVVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 LSQGCESTGPHYNPLAVPHPQHPGDFGNFAVRDGSLWRYRAGLAASLAGPHSIVGRAVVV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 HAGEDDLGRGGNQASVENGNAGRRLACCVVGVCGPGLWERQAREHSERKKRRRESECKAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 HAGEDDLGRGGNQASVENGNAGRRLACCVVGVCGPGLWERQAREHSERKKRRRESECKAA 190 200 210 220 230 240 >>NP_000445 (OMIM: 105400,147450) superoxide dismutase [ (154 aa) initn: 351 init1: 205 opt: 355 Z-score: 411.8 bits: 82.9 E(85289): 3.4e-16 Smith-Waterman score: 355; 42.3% identity (66.9% similar) in 142 aa overlap (78-212:15-152) 50 60 70 80 90 100 pF1KE6 EVMQRRDDDGTLHAACQVQPSATLDAAQPRVTGVVLFRQLAPRAKLDAFFALEGFPTEPN : :.. :.: . . .. ...:. :: NP_000 MATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGL-TE-- 10 20 30 40 110 120 130 140 150 160 pF1KE6 SSSRAIHVHQFGDLSQGCESTGPHYNPLAVPH--PQ----HPGDFGNF-AVRDGSLWRYR . ...:::.::: . :: :.:::.:::. : :. : ::.:: : .:: NP_000 -GLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSI 50 60 70 80 90 100 170 180 190 200 210 220 pF1KE6 AGLAASLAGPHSIVGRAVVVHAGEDDLGRGGNQASVENGNAGRRLACCVVGVCGPGLWER . ::.: : :.::..::: ::::.:::. :...:::: :::: :.:. NP_000 EDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ 110 120 130 140 150 230 240 pF1KE6 QAREHSERKKRRRESECKAA >>NP_005116 (OMIM: 603864) copper chaperone for superoxi (274 aa) initn: 333 init1: 152 opt: 292 Z-score: 337.1 bits: 70.0 E(85289): 4.9e-12 Smith-Waterman score: 298; 35.8% identity (60.3% similar) in 179 aa overlap (78-235:99-267) 50 60 70 80 90 100 pF1KE6 EVMQRRDDDGTLHAACQVQPSATLDAAQPRVTGVVLFRQLAP-RAKLDAFFALEGFPTEP : ::: : ::.: : ... ...:. :: NP_005 TGRQAVLKGMGSGQLQNLGAAVAILGGPGTVQGVVRFLQLTPERCLIEG--TIDGL--EP 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE6 NSSSRAIHVHQFGDLSQGCESTGPHYNPLAVPH--PQ----HPGDFGNFAVRDGSLWRYR . ...::::.:::...:.: : :.:: .. : :: : ::.:: :: . : NP_005 GL--HGLHVHQYGDLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGN--VRADADGRAI 130 140 150 160 170 180 170 180 190 200 210 pF1KE6 AGLAASLAGPHSIVGRAVVVHAGEDDLGRGGNQASVENGNAGRRLACCVVG--------- . ...::.... :::::::::. : .::.:.:::: ... NP_005 FRMEDEQLKVWDVIGRSLIIDEGEDDLGRGGHPLSKITGNSGERLACGIIARSAGLFQNP 190 200 210 220 230 240 220 230 240 pF1KE6 --VC---GPGLWERQAREHSERKKRRRESECKAA .: : .::...: . : :.:: NP_005 KQICSCDGLTIWEERGRPIA--GKGRKESAQPPAHL 250 260 270 240 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:20:50 2016 done: Tue Nov 8 11:20:51 2016 Total Scan time: 6.280 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]