Result of FASTA (omim) for
pFN21AB8923
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8923, 270 aa
1>>>pF1KB8923 270 - 270 aa - 270 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.2073+/-0.00035; mu= 0.0914+/- 0.022
mean_var=266.2149+/-54.597, 0's: 0 Z-trim(123.4): 183 B-trim: 2100 in 1/56
Lambda= 0.078606
statistics sampled from 42948 (43185) to 42948 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.801), E-opt: 0.2 (0.506), width: 16
Scan time: 8.430
The best scores are: opt bits E(85289)
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 1854 222.4 7.2e-58
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269) 1066 133.0 5.7e-31
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 529 72.1 1.2e-12
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 529 72.1 1.2e-12
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251) 527 71.8 1.4e-12
NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222) 524 71.5 1.6e-12
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 519 71.0 3e-12
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 515 70.5 3.5e-12
XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 480 66.5 5e-11
NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224) 480 66.5 5e-11
XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 480 66.5 5e-11
XP_011523029 (OMIM: 142961) PREDICTED: homeobox pr ( 288) 480 66.6 6e-11
NP_004494 (OMIM: 142972) homeobox protein Hox-C6 i ( 235) 467 65.0 1.4e-10
NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [ ( 233) 462 64.4 2.1e-10
NP_710160 (OMIM: 142972) homeobox protein Hox-C6 i ( 153) 458 63.8 2.2e-10
NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217) 435 61.4 1.7e-09
NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [ ( 230) 434 61.3 1.9e-09
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 376 54.9 2.9e-07
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 376 54.9 2.9e-07
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 376 54.9 2.9e-07
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 376 54.9 2.9e-07
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 376 54.9 2.9e-07
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 376 54.9 2.9e-07
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 376 54.9 2.9e-07
NP_002135 (OMIM: 142968,614744) homeobox protein H ( 301) 363 53.3 6.2e-07
NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [ ( 352) 364 53.5 6.4e-07
NP_062458 (OMIM: 142985) homeobox protein Hox-D8 i ( 290) 362 53.2 6.5e-07
XP_005257343 (OMIM: 142963) PREDICTED: homeobox pr ( 242) 360 52.9 6.7e-07
XP_016880053 (OMIM: 142963) PREDICTED: homeobox pr ( 243) 360 52.9 6.7e-07
NP_076921 (OMIM: 142963) homeobox protein Hox-B8 [ ( 243) 360 52.9 6.7e-07
NP_001186675 (OMIM: 142985) homeobox protein Hox-D ( 289) 360 53.0 7.6e-07
NP_001186676 (OMIM: 142985) homeobox protein Hox-D ( 106) 341 50.4 1.6e-06
NP_073149 (OMIM: 142970) homeobox protein Hox-C8 [ ( 242) 344 51.1 2.3e-06
NP_006726 (OMIM: 604685,612290) homeobox protein H ( 376) 334 50.1 7.1e-06
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 333 50.0 7.4e-06
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 333 50.0 7.4e-06
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 330 49.6 8.2e-06
NP_005513 (OMIM: 142955,601536) homeobox protein H ( 335) 331 49.7 8.2e-06
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 333 50.1 8.4e-06
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 333 50.1 8.4e-06
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431) 333 50.1 8.4e-06
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 333 50.1 8.4e-06
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 333 50.1 8.4e-06
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 333 50.1 8.4e-06
XP_016880049 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 333 50.2 1e-05
XP_016880047 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 333 50.2 1e-05
XP_016880051 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 333 50.2 1e-05
XP_016880050 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 333 50.2 1e-05
XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 333 50.2 1e-05
XP_016880046 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 333 50.2 1e-05
>>NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [Homo (270 aa)
initn: 1854 init1: 1854 opt: 1854 Z-score: 1160.0 bits: 222.4 E(85289): 7.2e-58
Smith-Waterman score: 1854; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270)
10 20 30 40 50 60
pF1KB8 MSSYFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MSSYFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRSG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SGHFGSGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSHHGGKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 SGHFGSGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSHHGGKN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYPWM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 SLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYPWM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 RKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 RKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIK
190 200 210 220 230 240
250 260 270
pF1KB8 IWFQNRRMKWKKDNKLKSMSMAAAGGAFRP
::::::::::::::::::::::::::::::
NP_061 IWFQNRRMKWKKDNKLKSMSMAAAGGAFRP
250 260 270
>>NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [Homo (269 aa)
initn: 951 init1: 560 opt: 1066 Z-score: 677.0 bits: 133.0 E(85289): 5.7e-31
Smith-Waterman score: 1066; 62.3% identity (78.3% similar) in 281 aa overlap (1-270:1-269)
10 20 30 40 50 60
pF1KB8 MSSYFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRSG
::::::::: ::::::::::: :::. ::.: ..:: :.::.: :::.::::::::.::.
NP_002 MSSYFVNSFSGRYPNGPDYQLLNYGSGSSLSGSYRDPAAMHTGSYGYNYNGMDLSVNRSS
10 20 30 40 50 60
70 80 90 100 110
pF1KB8 --SGHFGS-GERARSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSHHG
:.:::. :: .:.. : :. :::. : :.: .:. :::. ..::: :
NP_002 ASSSHFGAVGESSRAFPAPAQ----EPRFRQAASSCSLSSPESLPCT------NGDSH-G
70 80 90 100
120 130 140 150 160 170
pF1KB8 GKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPA---SSEQASAQSEP----SPAP
.: : :. : ...:.:. .. ..::. :.: . : : :: :: . ::
NP_002 AKPSASSPSDQATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTAAP
110 120 130 140 150 160
180 190 200 210 220
pF1KB8 PAQ-PQIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIA
.: :::.::::::::::: . ::.:::::::::::::::::::::::::::::::::::
NP_002 EGQTPQIFPWMRKLHISHD-MTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIA
170 180 190 200 210 220
230 240 250 260 270
pF1KB8 HALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP
:::::::::::::::::::::::::::::::.:.::.::.:
NP_002 HALCLSERQIKIWFQNRRMKWKKDNKLKSMSLATAGSAFQP
230 240 250 260
>>NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [Homo (264 aa)
initn: 586 init1: 382 opt: 529 Z-score: 348.0 bits: 72.1 E(85289): 1.2e-12
Smith-Waterman score: 529; 49.2% identity (64.9% similar) in 185 aa overlap (96-267:54-231)
70 80 90 100 110
pF1KB8 SGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLP--------CSAVAPSPGSDSHHG
: : : : :... .::.. ::
NP_705 SQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQ-GPGNSRGHG
30 40 50 60 70 80
120 130 140 150 160 170
pF1KB8 GKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIY
..: : . .. ::.. :: . : : ..:: : :: .:
NP_705 -----PAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQP-APDHPSSAASKQPIVY
90 100 110 120 130
180 190 200 210 220 230
pF1KB8 PWMRKLHIS--HDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLS
:::.:.:.: . : .: : ::.:::::: :.::::::::.::::::::::::::.::::
NP_705 PWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLS
140 150 160 170 180 190
240 250 260 270
pF1KB8 ERQIKIWFQNRRMKWKKDNKL---KSMSMAAAGGAFRP
::::::::::::::::::..: : : ::.:
NP_705 ERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPEQQ
200 210 220 230 240 250
NP_705 RAEDITRL
260
>>NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [Homo (264 aa)
initn: 586 init1: 382 opt: 529 Z-score: 348.0 bits: 72.1 E(85289): 1.2e-12
Smith-Waterman score: 529; 49.2% identity (64.9% similar) in 185 aa overlap (96-267:54-231)
70 80 90 100 110
pF1KB8 SGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLP--------CSAVAPSPGSDSHHG
: : : : :... .::.. ::
NP_055 SQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQ-GPGNSRGHG
30 40 50 60 70 80
120 130 140 150 160 170
pF1KB8 GKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIY
..: : . .. ::.. :: . : : ..:: : :: .:
NP_055 -----PAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQP-APDHPSSAASKQPIVY
90 100 110 120 130
180 190 200 210 220 230
pF1KB8 PWMRKLHIS--HDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLS
:::.:.:.: . : .: : ::.:::::: :.::::::::.::::::::::::::.::::
NP_055 PWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLS
140 150 160 170 180 190
240 250 260 270
pF1KB8 ERQIKIWFQNRRMKWKKDNKL---KSMSMAAAGGAFRP
::::::::::::::::::..: : : ::.:
NP_055 ERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPEQQ
200 210 220 230 240 250
NP_055 RAEDITRL
260
>>NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [Homo (251 aa)
initn: 514 init1: 396 opt: 527 Z-score: 347.1 bits: 71.8 E(85289): 1.4e-12
Smith-Waterman score: 536; 44.3% identity (61.0% similar) in 228 aa overlap (49-267:23-234)
20 30 40 50 60 70
pF1KB8 YQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRSGSGHFGSGERARS-YAASA
:. : . . :....:.: .: . :
NP_076 MAMSSFLINSNYVDPKFPPCEEYSQSDYLPSDHSPGYYAGGQRRESSFQPEA
10 20 30 40 50
80 90 100 110 120 130
pF1KB8 S----AAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSHHGGKNSLSNSSGASADAG
. :: . ::. : .: : : : : :: :: . : ::
NP_076 GFGRRAACTVQRYA--ACRDPGPPPPPPPPPPPPPPPG----------LSPRAPAPPPAG
60 70 80 90 100
140 150 160 170 180
pF1KB8 STHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPA--QPQIYPWMRKLHIS--HDN
. : : ..: :. .:::. : .: .::::::.:.: . :
NP_076 ALLPEP----GQRCEAVSSSPPPPPCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPN
110 120 130 140 150
190 200 210 220 230 240
pF1KB8 IGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMK
.: : ::.:::::: :.::::::::.:::::::::.:::::::::::::::::::::::
NP_076 YAGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMK
160 170 180 190 200 210
250 260 270
pF1KB8 WKKDNKLKSMSMAAAGGAFRP
::::.:: . .. ..:.:
NP_076 WKKDHKLPNTKIRSGGAAGSAGGPPGRPNGGPRAL
220 230 240 250
>>NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [Homo (222 aa)
initn: 523 init1: 410 opt: 524 Z-score: 345.9 bits: 71.5 E(85289): 1.6e-12
Smith-Waterman score: 625; 45.9% identity (66.4% similar) in 259 aa overlap (1-258:1-218)
10 20 30 40 50 60
pF1KB8 MSSYFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRSG
:::: .::: . :: : :.... :...:.:: ....:: :: :.:::.
NP_061 MSSYVANSFYKQSPNIPAYNMQTCGNYGSASE-------VQASRYCYG--GLDLSITFPP
10 20 30 40 50
70 80 90 100 110
pF1KB8 SGHFGSGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAP-SPGSDSHHGGK
. .: .. ..::. : : .: : :. :.: : .:: .:: :.....
NP_061 PAPSNS-LHGVDMAANPRAHPDRPACSAAAAPGHAPGRD-----EAAPLNPGMYSQKAAR
60 70 80 90 100
120 130 140 150 160 170
pF1KB8 NSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYPW
.: : . .:: .. :.. : .. :.: :::: :::::
NP_061 PAL------------------EERAKSSGEIKEEQAQTGQPAGLSQP-PAPP---QIYPW
110 120 130 140
180 190 200 210 220 230
pF1KB8 MRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQI
: :::.::.. .:::.::.::::::::::::::::::::::::::::. :::.::::
NP_061 MTKLHMSHET----DGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQI
150 160 170 180 190
240 250 260 270
pF1KB8 KIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP
::::::::::::::.:.::
NP_061 KIWFQNRRMKWKKDSKMKSKEAL
200 210 220
>>NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [Homo (320 aa)
initn: 491 init1: 393 opt: 519 Z-score: 340.8 bits: 71.0 E(85289): 3e-12
Smith-Waterman score: 519; 46.3% identity (66.2% similar) in 201 aa overlap (73-267:90-287)
50 60 70 80 90 100
pF1KB8 GRYGYGYNGMDLSVGRSGSGHFGSGERARSYAASASAAPAEPR-YSQPATSTHSPQPDPL
: : ..: : : : :. . :::.
NP_002 LPHAGGGREPTASYYAPRTAREPAYPAAALYPAHGAADTAYPYGYRGGASPGRPPQPEQP
60 70 80 90 100 110
110 120 130 140 150
pF1KB8 PCSAVAPSPGSDSHHGGKNSLSN--SSGASADAGSTHISSREGV-GTASGAEEDAPASSE
: .: .:. : . : . .: . : :. . . .. :. .:. .:::
NP_002 PAQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAAPATPGVPAGG--SAPACPL
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB8 QASAQSEPSPAPPAQPQIYPWMRKLHISHDN--IGGPEGKRARTAYTRYQTLELEKEFHF
. .: : .: .::::.:.:.: : .: : ::.:::::: :.:::::::::
NP_002 LLADKS-PLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHF
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB8 NRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP
::::::::::::::.:::::::.::::::::::::::.:: . .: ....:
NP_002 NRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPGK
240 250 260 270 280 290
NP_002 AQTQSPHLHPHPHPSTSTPVPSSI
300 310 320
>>NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [Homo (255 aa)
initn: 442 init1: 414 opt: 515 Z-score: 339.6 bits: 70.5 E(85289): 3.5e-12
Smith-Waterman score: 515; 46.6% identity (65.7% similar) in 204 aa overlap (62-256:27-215)
40 50 60 70 80 90
pF1KB8 EQFRDSASMHSGRYGYGYNGMDLSVGRSGSGHFGSGERARSYAASASAAPAEPRYSQPAT
:..: . : :...:..: .: :.
NP_055 MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGE-QGADYYGGGAQGADFQP----PGL
10 20 30 40 50
100 110 120 130 140
pF1KB8 STHSPQPD--PLPCSAVAPSPGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTASGA
:.:: : .. .:.::: :... .. :. : .. : :
NP_055 ---YPRPDFGEQPFGGSGPGPGSALPARGHGQEPGGPGG-------HYAAPGEPCPAPPA
60 70 80 90 100
150 160 170 180 190 200
pF1KB8 EEDAPASSEQASAQSEPSPAPPA----QPQI-YPWMRKLHIS--HDNIGGPEGKRARTAY
:: . .: .::.:. : . :: . ::::.:.:.. . : : : ::.::::
NP_055 PPPAPLPGARAYSQSDPKQPPSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAY
110 120 130 140 150 160
210 220 230 240 250 260
pF1KB8 TRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMA
:: :.:::::::::::::::::::::::.::::::::::::::::::::::.::
NP_055 TRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGR
170 180 190 200 210 220
270
pF1KB8 AAGGAFRP
NP_055 SSSSSSSSSCSSSVAPSQHLQPMAKDHHTDLTTL
230 240 250
>>XP_005257340 (OMIM: 142961) PREDICTED: homeobox protei (224 aa)
initn: 528 init1: 448 opt: 480 Z-score: 318.9 bits: 66.5 E(85289): 5e-11
Smith-Waterman score: 482; 46.0% identity (67.4% similar) in 187 aa overlap (95-264:30-215)
70 80 90 100 110 120
pF1KB8 GSGERARSYAASASAAPAEPRYSQPATSTHSPQPDPL---PCSAVAPSPGSDSHHGGKNS
: ::: : . .:.::.:. . ..
XP_005 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYP-APYGPGPGQDKGFATSSY
10 20 30 40 50
130 140 150 160 170
pF1KB8 LSNSSG-----ASADAGSTHISSRE--GVGTASGAEEDAPASSE--QASAQSEPSPAPPA
..: : : : . :: .. . :::.:. : : ... .. : .
XP_005 YPPAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQDKSVFGET
60 70 80 90 100 110
180 190 200 210 220
pF1KB8 QPQ-----IYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIE
. : .::::.... ... :: :.:.: .::::::::::::::.:::::::::::
XP_005 EEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIE
120 130 140 150 160 170
230 240 250 260 270
pF1KB8 IAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP
:::::::.:::::::::::::::::..:: : :. .:
XP_005 IAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQAE
180 190 200 210 220
>>NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [Homo (224 aa)
initn: 528 init1: 448 opt: 480 Z-score: 318.9 bits: 66.5 E(85289): 5e-11
Smith-Waterman score: 482; 46.0% identity (67.4% similar) in 187 aa overlap (95-264:30-215)
70 80 90 100 110 120
pF1KB8 GSGERARSYAASASAAPAEPRYSQPATSTHSPQPDPL---PCSAVAPSPGSDSHHGGKNS
: ::: : . .:.::.:. . ..
NP_061 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYP-APYGPGPGQDKGFATSSY
10 20 30 40 50
130 140 150 160 170
pF1KB8 LSNSSG-----ASADAGSTHISSRE--GVGTASGAEEDAPASSE--QASAQSEPSPAPPA
..: : : : . :: .. . :::.:. : : ... .. : .
NP_061 YPPAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQDKSVFGET
60 70 80 90 100 110
180 190 200 210 220
pF1KB8 QPQ-----IYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIE
. : .::::.... ... :: :.:.: .::::::::::::::.:::::::::::
NP_061 EEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIE
120 130 140 150 160 170
230 240 250 260 270
pF1KB8 IAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP
:::::::.:::::::::::::::::..:: : :. .:
NP_061 IAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQAE
180 190 200 210 220
270 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 20:02:32 2016 done: Sat Nov 5 20:02:33 2016
Total Scan time: 8.430 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]