FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB5712, 720 aa 1>>>pF1KB5712 720 - 720 aa - 720 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.1924+/-0.000934; mu= -0.2427+/- 0.056 mean_var=301.4069+/-60.958, 0's: 0 Z-trim(115.5): 24 B-trim: 0 in 0/53 Lambda= 0.073875 statistics sampled from 16020 (16041) to 16020 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.795), E-opt: 0.2 (0.493), width: 16 Scan time: 5.030 The best scores are: opt bits E(32554) CCDS72732.1 CNKSR1 gene_id:10256|Hs108|chr1 ( 720) 4938 540.0 4.7e-153 CCDS276.1 CNKSR1 gene_id:10256|Hs108|chr1 ( 713) 4868 532.5 8.2e-151 CCDS76124.1 CNKSR1 gene_id:10256|Hs108|chr1 ( 455) 3143 348.5 1.3e-95 >>CCDS72732.1 CNKSR1 gene_id:10256|Hs108|chr1 (720 aa) initn: 4938 init1: 4938 opt: 4938 Z-score: 2861.3 bits: 540.0 E(32554): 4.7e-153 Smith-Waterman score: 4938; 100.0% identity (100.0% similar) in 720 aa overlap (1-720:1-720) 10 20 30 40 50 60 pF1KB5 MEPVETWTPGKVATWLRGLDDSLQDYPFEDWQLPGKNLLQLCPQSLEALAVRSLGHQELI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 MEPVETWTPGKVATWLRGLDDSLQDYPFEDWQLPGKNLLQLCPQSLEALAVRSLGHQELI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB5 LGGVEQLQALSSRLQTENLQSLTEGLLGATHDFQSIVQGCLGDCAKTPIDVLCAAVELLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 LGGVEQLQALSSRLQTENLQSLTEGLLGATHDFQSIVQGCLGDCAKTPIDVLCAAVELLH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB5 EADALLFWLSRYLFSHLNDFSACQEIRDLLEELSQVLHEDGPAAEKEGTVLRICSHVAGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 EADALLFWLSRYLFSHLNDFSACQEIRDLLEELSQVLHEDGPAAEKEGTVLRICSHVAGI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB5 CHNILVCCPKELLEQKAVLEQVQLDSPLGLEIHTTSNCQHFVSQVDTQVPTDSRLQIQPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 CHNILVCCPKELLEQKAVLEQVQLDSPLGLEIHTTSNCQHFVSQVDTQVPTDSRLQIQPG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB5 DEVVQINEQVVVREERDMVGWPRKNMVRELLREPAGLSLVLKKIPIPETPPQTPPQVLDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 DEVVQINEQVVVREERDMVGWPRKNMVRELLREPAGLSLVLKKIPIPETPPQTPPQVLDS 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB5 PHQRSPSLSLAPLSPRAPSEDVFAFDLSSNPSPGPSPAWTDSASLGPEPLPIPPEPPAIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 PHQRSPSLSLAPLSPRAPSEDVFAFDLSSNPSPGPSPAWTDSASLGPEPLPIPPEPPAIL 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB5 PAGVAGTPGLPESPDKSPVGRKKSKGLATRLSRRRVSCRELGRPDCDGWLLLRKAPGGFM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 PAGVAGTPGLPESPDKSPVGRKKSKGLATRLSRRRVSCRELGRPDCDGWLLLRKAPGGFM 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB5 GPRWRRRWFVLKGHTLYWYRQPQDEKAEGLINVSNYSLESGHDQKKKYVFQLTHDVYKPF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 GPRWRRRWFVLKGHTLYWYRQPQDEKAEGLINVSNYSLESGHDQKKKYVFQLTHDVYKPF 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB5 IFAADTLTDLSMWVRHLITCISKYQSPGRAPPPREEDCYSETEAEDPDDEAGSHSASPSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 IFAADTLTDLSMWVRHLITCISKYQSPGRAPPPREEDCYSETEAEDPDDEAGSHSASPSP 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB5 AQAGSPLHGDTSPAATPTQRSPRTSFGSLTDSSEEALEGMVRGLRQGGVSLLGQPQPLTQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 AQAGSPLHGDTSPAATPTQRSPRTSFGSLTDSSEEALEGMVRGLRQGGVSLLGQPQPLTQ 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB5 EQWRSSFMRRNRDPQLNERVHRVRALQSTLKAKLQELQVLEEVLGDPELTGEKFRQWKEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 EQWRSSFMRRNRDPQLNERVHRVRALQSTLKAKLQELQVLEEVLGDPELTGEKFRQWKEQ 610 620 630 640 650 660 670 680 690 700 710 720 pF1KB5 NRELYSEGLGAWGVAQAEGSSHILTSDSTEQSPHSLPSDPEEHSHLCPLTSESSLRPPDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 NRELYSEGLGAWGVAQAEGSSHILTSDSTEQSPHSLPSDPEEHSHLCPLTSESSLRPPDL 670 680 690 700 710 720 >>CCDS276.1 CNKSR1 gene_id:10256|Hs108|chr1 (713 aa) initn: 3220 init1: 3220 opt: 4868 Z-score: 2821.1 bits: 532.5 E(32554): 8.2e-151 Smith-Waterman score: 4868; 99.0% identity (99.0% similar) in 720 aa overlap (1-720:1-713) 10 20 30 40 50 60 pF1KB5 MEPVETWTPGKVATWLRGLDDSLQDYPFEDWQLPGKNLLQLCPQSLEALAVRSLGHQELI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 MEPVETWTPGKVATWLRGLDDSLQDYPFEDWQLPGKNLLQLCPQSLEALAVRSLGHQELI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB5 LGGVEQLQALSSRLQTENLQSLTEGLLGATHDFQSIVQGCLGDCAKTPIDVLCAAVELLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 LGGVEQLQALSSRLQTENLQSLTEGLLGATHDFQSIVQGCLGDCAKTPIDVLCAAVELLH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB5 EADALLFWLSRYLFSHLNDFSACQEIRDLLEELSQVLHEDGPAAEKEGTVLRICSHVAGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 EADALLFWLSRYLFSHLNDFSACQEIRDLLEELSQVLHEDGPAAEKEGTVLRICSHVAGI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB5 CHNILVCCPKELLEQKAVLEQVQLDSPLGLEIHTTSNCQHFVSQVDTQVPTDSRLQIQPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 CHNILVCCPKELLEQKAVLEQVQLDSPLGLEIHTTSNCQHFVSQVDTQVPTDSRLQIQPG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB5 DEVVQINEQVVVREERDMVGWPRKNMVRELLREPAGLSLVLKKIPIPETPPQTPPQVLDS ::::::::::: :::::::::::::::::::::::::::::::::::::::::: CCDS27 DEVVQINEQVV-------VGWPRKNMVRELLREPAGLSLVLKKIPIPETPPQTPPQVLDS 250 260 270 280 290 310 320 330 340 350 360 pF1KB5 PHQRSPSLSLAPLSPRAPSEDVFAFDLSSNPSPGPSPAWTDSASLGPEPLPIPPEPPAIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 PHQRSPSLSLAPLSPRAPSEDVFAFDLSSNPSPGPSPAWTDSASLGPEPLPIPPEPPAIL 300 310 320 330 340 350 370 380 390 400 410 420 pF1KB5 PAGVAGTPGLPESPDKSPVGRKKSKGLATRLSRRRVSCRELGRPDCDGWLLLRKAPGGFM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 PAGVAGTPGLPESPDKSPVGRKKSKGLATRLSRRRVSCRELGRPDCDGWLLLRKAPGGFM 360 370 380 390 400 410 430 440 450 460 470 480 pF1KB5 GPRWRRRWFVLKGHTLYWYRQPQDEKAEGLINVSNYSLESGHDQKKKYVFQLTHDVYKPF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 GPRWRRRWFVLKGHTLYWYRQPQDEKAEGLINVSNYSLESGHDQKKKYVFQLTHDVYKPF 420 430 440 450 460 470 490 500 510 520 530 540 pF1KB5 IFAADTLTDLSMWVRHLITCISKYQSPGRAPPPREEDCYSETEAEDPDDEAGSHSASPSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 IFAADTLTDLSMWVRHLITCISKYQSPGRAPPPREEDCYSETEAEDPDDEAGSHSASPSP 480 490 500 510 520 530 550 560 570 580 590 600 pF1KB5 AQAGSPLHGDTSPAATPTQRSPRTSFGSLTDSSEEALEGMVRGLRQGGVSLLGQPQPLTQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 AQAGSPLHGDTSPAATPTQRSPRTSFGSLTDSSEEALEGMVRGLRQGGVSLLGQPQPLTQ 540 550 560 570 580 590 610 620 630 640 650 660 pF1KB5 EQWRSSFMRRNRDPQLNERVHRVRALQSTLKAKLQELQVLEEVLGDPELTGEKFRQWKEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 EQWRSSFMRRNRDPQLNERVHRVRALQSTLKAKLQELQVLEEVLGDPELTGEKFRQWKEQ 600 610 620 630 640 650 670 680 690 700 710 720 pF1KB5 NRELYSEGLGAWGVAQAEGSSHILTSDSTEQSPHSLPSDPEEHSHLCPLTSESSLRPPDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 NRELYSEGLGAWGVAQAEGSSHILTSDSTEQSPHSLPSDPEEHSHLCPLTSESSLRPPDL 660 670 680 690 700 710 >>CCDS76124.1 CNKSR1 gene_id:10256|Hs108|chr1 (455 aa) initn: 3143 init1: 3143 opt: 3143 Z-score: 1830.1 bits: 348.5 E(32554): 1.3e-95 Smith-Waterman score: 3143; 100.0% identity (100.0% similar) in 455 aa overlap (266-720:1-455) 240 250 260 270 280 290 pF1KB5 QIQPGDEVVQINEQVVVREERDMVGWPRKNMVRELLREPAGLSLVLKKIPIPETPPQTPP :::::::::::::::::::::::::::::: CCDS76 MVRELLREPAGLSLVLKKIPIPETPPQTPP 10 20 30 300 310 320 330 340 350 pF1KB5 QVLDSPHQRSPSLSLAPLSPRAPSEDVFAFDLSSNPSPGPSPAWTDSASLGPEPLPIPPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 QVLDSPHQRSPSLSLAPLSPRAPSEDVFAFDLSSNPSPGPSPAWTDSASLGPEPLPIPPE 40 50 60 70 80 90 360 370 380 390 400 410 pF1KB5 PPAILPAGVAGTPGLPESPDKSPVGRKKSKGLATRLSRRRVSCRELGRPDCDGWLLLRKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 PPAILPAGVAGTPGLPESPDKSPVGRKKSKGLATRLSRRRVSCRELGRPDCDGWLLLRKA 100 110 120 130 140 150 420 430 440 450 460 470 pF1KB5 PGGFMGPRWRRRWFVLKGHTLYWYRQPQDEKAEGLINVSNYSLESGHDQKKKYVFQLTHD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 PGGFMGPRWRRRWFVLKGHTLYWYRQPQDEKAEGLINVSNYSLESGHDQKKKYVFQLTHD 160 170 180 190 200 210 480 490 500 510 520 530 pF1KB5 VYKPFIFAADTLTDLSMWVRHLITCISKYQSPGRAPPPREEDCYSETEAEDPDDEAGSHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 VYKPFIFAADTLTDLSMWVRHLITCISKYQSPGRAPPPREEDCYSETEAEDPDDEAGSHS 220 230 240 250 260 270 540 550 560 570 580 590 pF1KB5 ASPSPAQAGSPLHGDTSPAATPTQRSPRTSFGSLTDSSEEALEGMVRGLRQGGVSLLGQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 ASPSPAQAGSPLHGDTSPAATPTQRSPRTSFGSLTDSSEEALEGMVRGLRQGGVSLLGQP 280 290 300 310 320 330 600 610 620 630 640 650 pF1KB5 QPLTQEQWRSSFMRRNRDPQLNERVHRVRALQSTLKAKLQELQVLEEVLGDPELTGEKFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 QPLTQEQWRSSFMRRNRDPQLNERVHRVRALQSTLKAKLQELQVLEEVLGDPELTGEKFR 340 350 360 370 380 390 660 670 680 690 700 710 pF1KB5 QWKEQNRELYSEGLGAWGVAQAEGSSHILTSDSTEQSPHSLPSDPEEHSHLCPLTSESSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 QWKEQNRELYSEGLGAWGVAQAEGSSHILTSDSTEQSPHSLPSDPEEHSHLCPLTSESSL 400 410 420 430 440 450 720 pF1KB5 RPPDL ::::: CCDS76 RPPDL 720 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 23:05:07 2016 done: Sun Nov 6 23:05:07 2016 Total Scan time: 5.030 Total Display time: 0.040 Function used was FASTA [36.3.4 Apr, 2011]