Result of FASTA (ccds) for
pFN21AE1357
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1357, 152 aa
1>>>pF1KE1357 152 - 152 aa - 152 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1558+/-0.000581; mu= 12.7655+/- 0.035
mean_var=61.6547+/-12.349, 0's: 0 Z-trim(112.5): 64 B-trim: 433 in 1/53
Lambda= 0.163339
statistics sampled from 13180 (13245) to 13180 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.407), width: 16
Scan time: 1.880
The best scores are: opt bits E(32554)
CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX ( 152) 1039 252.4 8.1e-68
CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 ( 152) 993 241.5 1.5e-64
CCDS78500.1 UBE2A gene_id:7319|Hs108|chrX ( 119) 816 199.7 4.4e-52
CCDS14581.1 UBE2A gene_id:7319|Hs108|chrX ( 122) 485 121.8 1.3e-28
CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 ( 147) 449 113.3 5.6e-26
CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 147) 446 112.6 9.2e-26
CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 147) 440 111.2 2.5e-25
CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 147) 438 110.7 3.4e-25
CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 148) 437 110.5 4e-25
CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 149) 435 110.0 5.6e-25
CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12 ( 152) 425 107.7 2.9e-24
CCDS10433.1 UBE2I gene_id:7329|Hs108|chr16 ( 158) 418 106.0 9.5e-24
CCDS13370.1 UBE2C gene_id:11065|Hs108|chr20 ( 179) 408 103.7 5.4e-23
CCDS56244.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 160) 402 102.3 1.3e-22
CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 193) 398 101.4 2.9e-22
CCDS2637.1 UBE2E2 gene_id:7325|Hs108|chr3 ( 201) 393 100.2 6.9e-22
CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2 ( 207) 391 99.7 9.8e-22
CCDS13374.1 UBE2C gene_id:11065|Hs108|chr20 ( 140) 386 98.5 1.6e-21
CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 118) 377 96.3 6e-21
CCDS75172.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 118) 376 96.1 7.1e-21
CCDS33114.1 UBE2S gene_id:27338|Hs108|chr19 ( 222) 370 94.8 3.2e-20
CCDS1425.1 UBE2T gene_id:29089|Hs108|chr1 ( 197) 362 92.9 1.1e-19
CCDS2639.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 176) 354 91.0 3.6e-19
CCDS5814.1 UBE2H gene_id:7328|Hs108|chr7 ( 183) 346 89.1 1.4e-18
CCDS73139.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 109) 333 85.9 7.4e-18
CCDS13372.1 UBE2C gene_id:11065|Hs108|chr20 ( 150) 324 83.9 4.2e-17
CCDS33976.1 UBE2K gene_id:3093|Hs108|chr4 ( 200) 317 82.3 1.7e-16
CCDS7960.1 UBE2L6 gene_id:9246|Hs108|chr11 ( 153) 314 81.5 2.2e-16
CCDS13790.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 154) 308 80.1 5.9e-16
CCDS13714.1 UBE2G2 gene_id:7327|Hs108|chr21 ( 165) 307 79.9 7.4e-16
CCDS627.1 UBE2U gene_id:148581|Hs108|chr1 ( 226) 305 79.5 1.3e-15
CCDS12987.1 UBE2M gene_id:9040|Hs108|chr19 ( 183) 303 79.0 1.5e-15
CCDS47043.1 UBE2K gene_id:3093|Hs108|chr4 ( 157) 296 77.3 4.3e-15
CCDS58795.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 212) 293 76.6 8.9e-15
CCDS6546.1 UBE2R2 gene_id:54926|Hs108|chr9 ( 238) 283 74.3 5e-14
CCDS14.1 UBE2J2 gene_id:118424|Hs108|chr1 ( 259) 265 70.1 1e-12
CCDS47874.2 UBE2W gene_id:55284|Hs108|chr8 ( 180) 263 69.5 1e-12
CCDS47875.2 UBE2W gene_id:55284|Hs108|chr8 ( 191) 262 69.3 1.3e-12
CCDS58796.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 122) 258 68.3 1.7e-12
CCDS12030.1 CDC34 gene_id:997|Hs108|chr19 ( 236) 257 68.2 3.5e-12
CCDS32532.1 UBE2G1 gene_id:7326|Hs108|chr17 ( 170) 239 63.9 5e-11
CCDS33586.1 UBE2G2 gene_id:7327|Hs108|chr21 ( 137) 237 63.3 5.8e-11
>>CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX (152 aa)
initn: 1039 init1: 1039 opt: 1039 Z-score: 1331.0 bits: 252.4 E(32554): 8.1e-68
Smith-Waterman score: 1039; 100.0% identity (100.0% similar) in 152 aa overlap (1-152:1-152)
10 20 30 40 50 60
pF1KE1 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 EEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNS
70 80 90 100 110 120
130 140 150
pF1KE1 PANSQAAQLYQENKREYEKRVSAIVEQSWRDC
::::::::::::::::::::::::::::::::
CCDS14 PANSQAAQLYQENKREYEKRVSAIVEQSWRDC
130 140 150
>>CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 (152 aa)
initn: 1006 init1: 993 opt: 993 Z-score: 1272.4 bits: 241.5 E(32554): 1.5e-64
Smith-Waterman score: 993; 96.0% identity (98.7% similar) in 151 aa overlap (1-151:1-151)
10 20 30 40 50 60
pF1KE1 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFT
:::::::::::::::::::::.:::::::::::: ::::::::::::::::::::.:::.
CCDS41 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 EEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNS
::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNS
70 80 90 100 110 120
130 140 150
pF1KE1 PANSQAAQLYQENKREYEKRVSAIVEQSWRDC
::::::::::::::::::::::::::::: :
CCDS41 PANSQAAQLYQENKREYEKRVSAIVEQSWNDS
130 140 150
>>CCDS78500.1 UBE2A gene_id:7319|Hs108|chrX (119 aa)
initn: 816 init1: 816 opt: 816 Z-score: 1048.6 bits: 199.7 E(32554): 4.4e-52
Smith-Waterman score: 816; 100.0% identity (100.0% similar) in 119 aa overlap (34-152:1-119)
10 20 30 40 50 60
pF1KE1 PARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEY
::::::::::::::::::::::::::::::
CCDS78 MVWNAVIFGPEGTPFEDGTFKLTIEFTEEY
10 20 30
70 80 90 100 110 120
pF1KE1 PNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 PNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPAN
40 50 60 70 80 90
130 140 150
pF1KE1 SQAAQLYQENKREYEKRVSAIVEQSWRDC
:::::::::::::::::::::::::::::
CCDS78 SQAAQLYQENKREYEKRVSAIVEQSWRDC
100 110
>>CCDS14581.1 UBE2A gene_id:7319|Hs108|chrX (122 aa)
initn: 485 init1: 485 opt: 485 Z-score: 626.9 bits: 121.8 E(32554): 1.3e-28
Smith-Waterman score: 762; 80.3% identity (80.3% similar) in 152 aa overlap (1-152:1-122)
10 20 30 40 50 60
pF1KE1 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFT
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFED----------
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 EEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNS
::::::::::::::::::::::::::::::::::::::::
CCDS14 --------------------VYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNS
60 70 80 90
130 140 150
pF1KE1 PANSQAAQLYQENKREYEKRVSAIVEQSWRDC
::::::::::::::::::::::::::::::::
CCDS14 PANSQAAQLYQENKREYEKRVSAIVEQSWRDC
100 110 120
>>CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 (147 aa)
initn: 406 init1: 406 opt: 449 Z-score: 579.8 bits: 113.3 E(32554): 5.6e-26
Smith-Waterman score: 449; 43.7% identity (79.3% similar) in 135 aa overlap (5-139:2-136)
10 20 30 40 50 60
pF1KE1 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFT
: .:..... ::.:::: :..: .... :.:.:.::. .:.. :.: :::.:
CCDS54 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFP
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 EEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNS
.:: ::: : :..:..:::. ..::::::::...:::. ::..: :: ::: .:::..
CCDS54 TDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDD
60 70 80 90 100 110
130 140 150
pF1KE1 PANSQAAQLYQENKREYEKRVSAIVEQSWRDC
: . :. :. ....:..
CCDS54 PLVPEIAHTYKADREKYNRLAREWTQKYAM
120 130 140
>>CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 (147 aa)
initn: 444 init1: 428 opt: 446 Z-score: 576.0 bits: 112.6 E(32554): 9.2e-26
Smith-Waterman score: 446; 43.0% identity (79.3% similar) in 135 aa overlap (5-139:2-136)
10 20 30 40 50 60
pF1KE1 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFT
: .:...... ::.:::: :..: .... :.:.:.:: . .. :.: ::..:
CCDS72 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFP
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 EEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNS
.:: ::: . :..:..:::. ..::::::::...:::. ::..: :: ::: .:::..
CCDS72 TDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDD
60 70 80 90 100 110
130 140 150
pF1KE1 PANSQAAQLYQENKREYEKRVSAIVEQSWRDC
: . ::.:. .:..:..
CCDS72 PLVPDIAQIYKSDKEKYNRHAREWTQKYAM
120 130 140
>>CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 (147 aa)
initn: 402 init1: 390 opt: 440 Z-score: 568.3 bits: 111.2 E(32554): 2.5e-25
Smith-Waterman score: 440; 41.5% identity (79.3% similar) in 135 aa overlap (5-139:2-136)
10 20 30 40 50 60
pF1KE1 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFT
: .:. .... : .:::: :..: .... :.:.:.::. .:.. :.: :::.:
CCDS43 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 EEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNS
.:: ::: : :.....:::. ..::::::::...:::. .:..: :: ::: .:::..
CCDS43 TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD
60 70 80 90 100 110
130 140 150
pF1KE1 PANSQAAQLYQENKREYEKRVSAIVEQSWRDC
: . :..:. ....:..
CCDS43 PLVPEIARIYKTDREKYNRIAREWTQKYAM
120 130 140
>>CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 (147 aa)
initn: 402 init1: 390 opt: 438 Z-score: 565.8 bits: 110.7 E(32554): 3.4e-25
Smith-Waterman score: 438; 42.0% identity (78.3% similar) in 138 aa overlap (5-142:2-138)
10 20 30 40 50 60
pF1KE1 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFT
: .:. .... : .:::: :..: .... :.:.:.::. .:.. :.: :::.:
CCDS36 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 EEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNS
.:: ::: : :.....:::. ..::::::::...:::. .:..: :: ::: .:::..
CCDS36 TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD
60 70 80 90 100 110
130 140 150
pF1KE1 PANSQAAQLYQENKREYEKRVSAIVEQSWRDC
: . :..:. .. .:. :.:
CCDS36 PLVPEIARIYKTDRDKYN-RISREWTQKYAM
120 130 140
>>CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 (148 aa)
initn: 402 init1: 390 opt: 437 Z-score: 564.5 bits: 110.5 E(32554): 4e-25
Smith-Waterman score: 437; 41.5% identity (78.5% similar) in 135 aa overlap (5-139:2-136)
10 20 30 40 50 60
pF1KE1 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFT
: .:. .... : .:::: :..: .... :.:.:.::. .:.. :.: :::.:
CCDS36 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 EEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNS
.:: ::: : :.....:::. ..::::::::...:::. .:..: :: ::: .:::..
CCDS36 TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD
60 70 80 90 100 110
130 140 150
pF1KE1 PANSQAAQLYQENKREYEKRVSAIVEQSWRDC
: . :..:. .. .:..
CCDS36 PLVPEIARIYKTDRDKYNRLAREWTEKYAML
120 130 140
>>CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 (149 aa)
initn: 402 init1: 390 opt: 435 Z-score: 561.9 bits: 110.0 E(32554): 5.6e-25
Smith-Waterman score: 435; 42.3% identity (78.1% similar) in 137 aa overlap (6-142:5-140)
10 20 30 40 50 60
pF1KE1 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFT
:. : .... : .:::: :..: .... :.:.:.::. .:.. :.: :::.:
CCDS36 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 EEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNS
.:: ::: : :.....:::. ..::::::::...:::. .:..: :: ::: .:::..
CCDS36 TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD
60 70 80 90 100 110
130 140 150
pF1KE1 PANSQAAQLYQENKREYEKRVSAIVEQSWRDC
: . :..:. .. .:. :.:
CCDS36 PLVPEIARIYKTDRDKYN-RISREWTQKYAM
120 130 140
152 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 23:05:43 2016 done: Sun Nov 6 23:05:43 2016
Total Scan time: 1.880 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]